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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HF2 | 34710 | 2023-07-03 | 2022-11-09 | 4.14 | 5.08 | 4.11 | 4.8 | 0.012 | 1.04 | 0.0 | 0.05 | 14.20 | 0.00 | 2.264 | 15.84 | 0.00 | 5.1 | 94.9 | 0.0 | -4.39 | 0.57 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4660 | 600 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CYJ | 27080 | 2023-07-05 | 2022-05-23 | 3.6 | 4.32 | 3.59 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 14.18 | 0.01 | 2.056 | 7.59 | 0.00 | 6.7 | 92.5 | 0.9 | -0.91 | 0.79 | 0.57 | 1.23 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 16.06 | 0.01 | 1.894 | 26.14 | 0.69 | 12.0 | 87.3 | 0.7 | -1.71 | 0.82 | 0.81 | 0.64 | 0.91 | 10575 | 701 | 5 | 0 | 0 | 0 | 5089 | logfile |
✔ | 7NHX | 12342 | 2023-07-16 | 2021-02-11 | 3.23 | 3.85 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 14.58 | 0.01 | 1.869 | 9.83 | 0.00 | 4.7 | 95.2 | 0.1 | -2.68 | 0.84 | 0.78 | 2.44 | 3.6 | 0.004 | 0.59 | 0.0 | 0.04 | 15.66 | 0.00 | 1.970 | 9.48 | 0.05 | 4.3 | 95.7 | 0.0 | 0.14 | 1.13 | 0.84 | 0.83 | 2.29 | 34661 | 2121 | 5 | 23 | 0 | 0 | 17149 | logfile |
✔ | 7NGH | 12314 | 2023-07-05 | 2021-02-09 | 3.5 | 4.33 | — | 4.0 | 0.005 | 0.64 | 0.0 | 0.04 | 12.54 | 0.00 | 2.169 | 18.02 | 0.00 | 4.9 | 95.1 | 0.0 | -2.00 | 0.74 | 0.86 | 1.13 | 3.9 | 0.004 | 0.82 | 0.0 | 0.04 | 14.33 | 0.00 | 2.112 | 16.75 | 0.09 | 4.5 | 95.5 | 0.0 | 1.11 | 1.11 | 0.73 | 0.84 | 0.66 | 10315 | 1374 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KAH | 22770 | 2023-07-05 | 2020-10-01 | 3.1 | 3.79 | 3.14 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 12.90 | 0.00 | 2.257 | 4.61 | 0.00 | 3.2 | 96.8 | 0.0 | -1.32 | 0.69 | 0.86 | 2.50 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.160 | 5.69 | 0.18 | 2.2 | 97.8 | 0.0 | 2.04 | 1.27 | 0.69 | 0.87 | 1.94 | 10495 | 1349 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KAL | 22774 | 2023-07-05 | 2020-10-01 | 4.0 | 4.57 | 4.10 | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 11.87 | 0.00 | 2.262 | 5.74 | 0.00 | 2.6 | 97.3 | 0.1 | -0.72 | 0.63 | 0.82 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 14.55 | 0.00 | 2.247 | 9.53 | 0.09 | 3.2 | 96.7 | 0.1 | 1.77 | 1.29 | 0.63 | 0.83 | — | 10789 | 1429 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKH | 25969 | 2023-07-10 | 2022-01-17 | 4.4 | 7.29 | 4.45 | 4.2 | 0.019 | 2.19 | 0.0 | 0.00 | 6.81 | 0.01 | 2.385 | 0.08 | 0.00 | 3.9 | 94.7 | 1.4 | -0.35 | 0.59 | 0.62 | — | 4.2 | 0.018 | 1.32 | 0.0 | 0.00 | 7.42 | 0.01 | 1.974 | 32.32 | 0.00 | 15.1 | 84.5 | 0.3 | -2.28 | 1.70 | 0.83 | 0.84 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DNJ | 30785 | 2023-07-05 | 2020-12-09 | 3.3 | 3.62 | — | 3.5 | 0.008 | 0.78 | 0.0 | 0.05 | 15.34 | 0.00 | 2.199 | 16.53 | 0.33 | 3.9 | 96.0 | 0.1 | -1.61 | 0.80 | 0.84 | 2.71 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 17.38 | 0.00 | 2.108 | 15.80 | 0.16 | 2.4 | 97.6 | 0.0 | 0.34 | 1.20 | 0.81 | 0.85 | 1.84 | 10926 | 1369 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5V4S | 8633 | 2023-07-05 | 2017-03-10 | 4.2 | 7.95 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.55 | 0.60 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 9.90 | 0.00 | 2.233 | 11.27 | 0.00 | 2.1 | 97.9 | 0.0 | 2.80 | 0.88 | 0.62 | 0.70 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKQ | 25978 | 2023-07-10 | 2022-01-17 | 4.5 | 7.57 | 4.53 | 4.3 | 0.019 | 2.21 | 0.0 | 0.00 | 6.72 | 0.01 | 2.371 | 0.08 | 0.00 | 4.0 | 94.5 | 1.5 | -0.48 | 0.59 | 0.61 | — | 4.3 | 0.009 | 1.21 | 0.0 | 0.00 | 7.52 | 0.01 | 1.933 | 34.86 | 0.00 | 13.6 | 85.9 | 0.5 | -2.21 | 0.83 | 0.82 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KAT | 22783 | 2023-07-05 | 2020-10-01 | 4.4 | 5.04 | 4.41 | 4.5 | 0.002 | 0.51 | 0.0 | 0.04 | 11.32 | 0.00 | 2.185 | 6.90 | 0.00 | 1.9 | 98.1 | 0.0 | -0.63 | 0.65 | 0.83 | — | 4.5 | 0.005 | 0.67 | 0.0 | 0.04 | 12.03 | 0.00 | 2.069 | 13.13 | 0.00 | 3.4 | 96.6 | 0.0 | 1.88 | 1.32 | 0.66 | 0.85 | — | 10431 | 1340 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NT5 | 0502 | 2023-07-03 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PTQ | 13633 | 2023-07-08 | 2021-09-27 | 4.08 | 6.47 | 4.22 | 4.0 | 0.005 | 0.78 | 0.0 | 0.04 | 15.27 | 0.00 | 1.983 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.80 | — | 4.0 | 0.006 | 0.67 | 0.0 | 0.04 | 19.44 | 0.00 | 1.852 | 43.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.75 | 0.96 | 0.94 | — | 17434 | 0 | 1 | 544 | 0 | 0 | 5847 | logfile |
✔ | 7TKG | 25968 | 2023-07-10 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.3 | 0.007 | 1.14 | 0.0 | 0.00 | 7.61 | 0.01 | 2.015 | 33.28 | 0.00 | 19.7 | 80.0 | 0.3 | -3.26 | 2.09 | 0.77 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XSL | 33426 | 2023-07-06 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 16.20 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.006 | 0.70 | 0.0 | 0.04 | 18.31 | 0.01 | 1.810 | 33.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.02 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 8EHG | 28147 | 2023-07-05 | 2022-09-14 | 2.24 | 2.24 | 2.25 | 2.3 | 0.003 | 0.53 | 0.0 | 0.04 | 16.09 | 0.00 | 2.291 | 4.70 | 1.44 | 1.5 | 98.5 | 0.0 | 1.13 | 0.74 | 0.83 | 5.20 | 2.4 | 0.003 | 0.55 | 0.0 | 0.04 | 16.76 | 0.00 | 2.229 | 4.04 | 2.16 | 1.2 | 98.8 | 0.0 | 1.61 | 0.20 | 0.72 | 0.84 | 5.39 | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2023-07-17 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.77 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.003 | 0.58 | 0.0 | 0.04 | 14.68 | 0.00 | 2.172 | 14.08 | 0.15 | 1.7 | 98.3 | 0.0 | 3.68 | 0.87 | 0.81 | 0.66 | -0.16 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C4S | 16427 | 2023-07-05 | 2023-01-04 | 3.27 | 3.46 | 3.25 | 3.3 | 0.005 | 0.85 | 6.0 | 0.05 | 15.99 | 0.00 | 2.258 | 8.25 | 1.24 | 2.9 | 96.9 | 0.2 | 1.15 | 0.82 | 0.85 | 2.80 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 16.06 | 0.00 | 2.123 | 8.40 | 0.00 | 2.8 | 97.0 | 0.2 | 1.69 | 0.36 | 0.83 | 0.86 | 3.05 | 10292 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KAM | 22775 | 2023-07-05 | 2020-10-01 | 3.8 | 4.43 | 3.92 | 4.1 | 0.003 | 0.54 | 0.0 | 0.04 | 11.79 | 0.00 | 2.150 | 5.67 | 0.00 | 3.0 | 96.9 | 0.1 | -1.16 | 0.64 | 0.82 | 1.85 | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 14.40 | 0.00 | 2.140 | 9.88 | 0.18 | 3.3 | 96.6 | 0.1 | 1.54 | 0.52 | 0.65 | 0.84 | 1.38 | 10916 | 1445 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GPN | 34195 | 2023-07-07 | 2022-08-26 | 3.2 | 3.80 | 3.24 | 3.4 | 0.007 | 0.62 | 0.0 | 0.04 | 26.27 | 0.00 | 2.193 | 8.82 | 0.11 | 2.6 | 97.4 | 0.0 | 1.29 | 0.84 | 0.80 | 3.26 | 3.4 | 0.003 | 0.58 | 0.0 | 0.03 | 26.69 | 0.00 | 2.133 | 9.44 | 0.34 | 2.6 | 97.3 | 0.1 | 2.31 | 1.56 | 0.86 | 0.85 | 1.90 | 15047 | 1211 | 11 | 292 | 0 | 0 | 0 | logfile |