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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DXR | 27774 | 2023-07-05 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oJH | 12951 | 2023-07-05 | 2021-05-15 | 3.1 | 3.40 | 3.12 | 3.3 | 0.011 | 0.90 | 0.0 | 0.05 | 11.01 | 0.00 | 2.240 | 2.92 | 0.52 | 2.9 | 97.1 | 0.0 | 0.37 | 0.70 | 0.83 | 3.56 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 14.62 | 0.00 | 2.245 | 4.58 | 0.10 | 2.9 | 97.1 | 0.0 | 1.25 | 0.99 | 0.71 | 0.87 | 2.71 | 8999 | 1138 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7W9i | 32367 | 2023-07-04 | 2021-12-09 | 3.4 | 3.65 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.05 | 14.90 | 0.01 | 2.289 | 3.91 | 0.00 | 4.8 | 95.2 | 0.0 | -5.48 | 0.68 | 0.80 | 2.34 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 16.48 | 0.00 | 2.238 | 7.11 | 0.14 | 1.9 | 98.1 | 0.0 | -0.89 | 1.20 | 0.66 | 0.80 | 1.95 | 6412 | 791 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Bi0 | 16075 | 2023-07-05 | 2022-11-01 | 3.2 | 3.55 | 3.24 | 3.5 | 0.007 | 0.88 | 0.0 | 0.05 | 11.57 | 0.00 | 1.257 | 2.85 | 0.20 | 3.5 | 96.3 | 0.2 | 0.83 | 0.67 | 0.85 | 4.07 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 14.33 | 0.00 | 2.032 | 5.85 | 0.20 | 2.1 | 97.9 | 0.0 | 1.95 | 0.59 | 0.66 | 0.88 | 2.73 | 9198 | 1142 | 4 | 0 | 11 | 0 | 0 | logfile |
✔ | 6S7o | 10110 | 2023-07-09 | 2019-07-05 | 3.5 | 3.68 | — | 3.7 | 0.032 | 1.27 | 0.0 | 0.15 | 13.31 | 0.00 | 2.232 | 15.62 | 1.47 | 5.7 | 94.1 | 0.2 | -1.66 | 0.72 | 0.85 | 2.98 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 15.19 | 0.00 | 2.169 | 12.30 | 0.44 | 5.5 | 94.4 | 0.0 | 0.46 | 1.98 | 0.69 | 0.86 | 2.81 | 18118 | 2197 | 17 | 0 | 38 | 0 | 0 | logfile |
✔ | 8AQV | 15591 | 2023-07-04 | 2022-08-13 | 2.96 | 3.40 | 3.09 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.07 | 0.00 | 2.164 | 4.53 | 0.00 | 4.8 | 94.5 | 0.6 | -1.32 | 0.64 | 0.80 | 2.89 | 3.4 | 0.002 | 0.62 | 0.0 | 0.04 | 16.31 | 0.00 | 2.193 | 5.80 | 1.60 | 4.7 | 94.8 | 0.5 | 0.25 | 0.55 | 0.62 | 0.80 | 1.99 | 6447 | 789 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6NYF | 0542 | 2023-07-16 | 2019-02-11 | 3.2 | 3.97 | — | 3.8 | 0.007 | 0.99 | 0.0 | 0.06 | 10.44 | 0.01 | 2.263 | 6.08 | 0.32 | 12.9 | 87.1 | 0.0 | -5.20 | 0.82 | 0.80 | 3.21 | 3.8 | 0.002 | 0.63 | 0.0 | 0.05 | 12.46 | 0.00 | 2.191 | 10.93 | 0.30 | 8.7 | 91.3 | 0.0 | -3.73 | 1.60 | 0.80 | 0.77 | 2.58 | 34332 | 4500 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q4D | 13803 | 2023-07-10 | 2021-10-30 | 3.78 | 4.08 | 3.81 | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 13.70 | 0.01 | 1.859 | 4.92 | 0.00 | 2.5 | 97.5 | 0.0 | -1.89 | 0.83 | 0.80 | 3.21 | 3.9 | 0.002 | 0.58 | 0.0 | 0.03 | 15.64 | 0.00 | 1.443 | 8.30 | 0.19 | 2.6 | 97.4 | 0.0 | 1.38 | 1.31 | 0.82 | 0.79 | 1.68 | 20098 | 1216 | 18 | 0 | 58 | 0 | 9462 | logfile |
✔ | 7Y9X | 33695 | 2023-07-09 | 2022-06-26 | 2.49 | 2.67 | 2.52 | 2.7 | 0.004 | 0.52 | 0.0 | 0.04 | 9.50 | 0.00 | 2.130 | 5.49 | 0.31 | 1.6 | 98.4 | 0.0 | -0.15 | 0.70 | 0.82 | 4.82 | 2.7 | 0.002 | 0.48 | 0.0 | 0.04 | 14.67 | 0.00 | 2.206 | 6.55 | 1.30 | 1.4 | 98.6 | 0.0 | 1.17 | 1.95 | 0.67 | 0.82 | 3.94 | 18662 | 2192 | 4 | 38 | 4 | 0 | 0 | logfile |
✔ | 7EDH | 31071 | 2023-07-11 | 2021-03-16 | 3.6 | 4.18 | — | 4.0 | 0.004 | 0.67 | 0.0 | 0.05 | 13.66 | 0.00 | 2.189 | 7.03 | 0.16 | 6.4 | 93.3 | 0.3 | -1.26 | 0.80 | 0.78 | 2.26 | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 15.28 | 0.00 | 2.170 | 6.90 | 0.20 | 6.0 | 93.7 | 0.3 | -0.88 | 0.36 | 0.81 | 0.78 | 2.11 | 23276 | 2846 | 36 | 0 | 77 | 0 | 0 | logfile |
✔ | 8GS2 | 34218 | 2023-07-08 | 2022-09-04 | 2.84 | 3.09 | 2.94 | 3.1 | 0.002 | 0.42 | 0.0 | 0.04 | 10.20 | 0.00 | 1.579 | 4.49 | 0.30 | 1.2 | 98.8 | 0.0 | 1.18 | 0.74 | 0.89 | 4.67 | 3.1 | 0.002 | 0.48 | 0.0 | 0.04 | 15.09 | 0.00 | 2.185 | 6.70 | 1.56 | 1.7 | 98.3 | 0.0 | 1.43 | 1.32 | 0.74 | 0.90 | 4.14 | 16935 | 1916 | 7 | 64 | 4 | 0 | 0 | logfile |
✔ | 7NTC | 12587 | 2023-07-14 | 2021-03-09 | 3.6 | 4.35 | 3.76 | 4.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.27 | 0.00 | 2.165 | 7.60 | 0.00 | 6.7 | 93.2 | 0.1 | -0.97 | 0.84 | 0.83 | 1.67 | 4.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.67 | 0.00 | 2.145 | 6.45 | 0.16 | 5.3 | 94.6 | 0.1 | -0.62 | 0.34 | 0.83 | 0.82 | 1.44 | 30005 | 3698 | 33 | 0 | 81 | 0 | 0 | logfile |
✔ | 7PTR | 13634 | 2023-07-15 | 2021-09-27 | 3.46 | 4.28 | 3.39 | 3.8 | 0.002 | 0.47 | 0.0 | 0.04 | 9.81 | 0.00 | 2.195 | 6.90 | 0.00 | 3.0 | 97.0 | 0.0 | -0.08 | 0.75 | 0.80 | 1.24 | 3.9 | 0.002 | 0.52 | 0.0 | 0.04 | 12.69 | 0.00 | 2.112 | 8.76 | 0.20 | 3.2 | 96.8 | 0.0 | -0.76 | 0.47 | 0.75 | 0.83 | 1.14 | 31704 | 4350 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 6X0V | 21985 | 2023-07-03 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.49 | 0.0 | 0.04 | 12.98 | 0.00 | 2.224 | 17.83 | 0.00 | 5.0 | 95.0 | 0.0 | 2.29 | 1.20 | 0.40 | 0.76 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |
✔ | 6BGo | 7098 | 2023-07-19 | 2017-10-29 | 4.2 | 4.71 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.05 | 12.93 | 0.01 | 1.245 | 13.74 | 1.01 | 3.0 | 96.9 | 0.1 | -0.26 | 0.83 | 0.75 | — | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 12.80 | 0.00 | 2.061 | 6.66 | 0.06 | 2.7 | 97.3 | 0.0 | 2.01 | 1.58 | 0.90 | 0.85 | — | 46500 | 6170 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 5NWY | 3713 | 2023-07-18 | 2017-05-08 | 2.9 | 3.27 | — | 3.2 | 0.016 | 1.63 | 59.0 | 0.11 | 15.05 | 0.01 | 1.364 | 4.35 | 1.45 | 8.7 | 90.3 | 1.0 | -4.03 | 0.83 | 0.90 | 4.04 | 3.2 | 0.002 | 0.57 | 0.0 | 0.03 | 15.25 | 0.00 | 2.103 | 10.01 | 2.82 | 7.3 | 92.6 | 0.1 | -0.94 | 0.48 | 0.82 | 0.87 | 2.84 | 144142 | 5718 | 56 | 4633 | 0 | 0 | 0 | logfile |
✔ | 7WSG | 32757 | 2023-07-06 | 2022-01-29 | 3.03 | 3.29 | — | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 12.82 | 0.00 | 2.058 | 10.65 | 4.60 | 2.7 | 97.3 | 0.0 | -1.05 | 0.70 | 0.70 | 2.71 | 3.2 | 0.002 | 0.59 | 0.0 | 0.04 | 15.41 | 0.00 | 2.079 | 12.73 | 0.29 | 3.4 | 96.6 | 0.0 | -0.22 | 0.94 | 0.71 | 0.73 | 2.03 | 6413 | 787 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6N7P | 0360 | 2023-07-18 | 2018-11-27 | 3.6 | 3.72 | — | 3.6 | 0.011 | 1.17 | 5.0 | 0.07 | 15.19 | 0.01 | 2.186 | 5.79 | 3.35 | 6.9 | 92.4 | 0.6 | -3.75 | 0.71 | 0.79 | 3.02 | 3.6 | 0.002 | 0.62 | 0.0 | 0.04 | 15.56 | 0.00 | 2.032 | 8.53 | 0.21 | 5.8 | 94.1 | 0.1 | 0.70 | 1.49 | 0.68 | 0.76 | 1.78 | 41488 | 4206 | 23 | 580 | 56 | 0 | 0 | logfile |
✔ | 8DD8 | 27336 | 2023-07-05 | 2022-06-17 | 3.4 | 3.50 | 3.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.62 | 0.00 | 2.211 | 7.34 | 0.00 | 4.0 | 95.9 | 0.1 | -0.65 | 0.81 | 0.81 | 2.33 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 16.75 | 0.00 | 2.198 | 10.21 | 0.00 | 4.0 | 96.0 | 0.0 | 0.42 | 1.22 | 0.83 | 0.84 | 1.99 | 10492 | 1272 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7USW | 26741 | 2023-07-07 | 2022-04-26 | 3.1 | 3.48 | 3.14 | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 15.91 | 0.01 | 2.254 | 7.09 | 0.21 | 3.1 | 96.9 | 0.0 | 2.17 | 0.63 | 0.80 | 2.13 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 16.01 | 0.00 | 2.249 | 5.38 | 0.35 | 3.2 | 96.8 | 0.0 | 2.29 | 0.27 | 0.63 | 0.82 | 2.11 | 14322 | 1676 | 12 | 0 | 68 | 0 | 0 | logfile |