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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3KTT | 5148 | 2023-07-03 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-07-03 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RYF | 24738 | 2023-07-13 | 2021-08-25 | 2.65 | 2.01 | — | 2.3 | 0.006 | 0.61 | 0.0 | 0.07 | 15.08 | 0.02 | 1.764 | 4.27 | 0.02 | 2.5 | 97.4 | 0.1 | 1.04 | 0.76 | 0.73 | 2.78 | 1.6 | 0.006 | 0.86 | 0.0 | 0.05 | 16.21 | 0.01 | 1.789 | 6.92 | 3.02 | 3.3 | 96.6 | 0.1 | -0.06 | 0.36 | 0.79 | 0.77 | 2.75 | 137516 | 5497 | 55 | 4408 | 8 | 0 | 0 | logfile |
✔ | 6W6P | 21562 | 2023-07-12 | 2020-03-17 | 2.9 | 2.21 | — | 1.7 | 0.010 | 1.07 | 0.0 | 0.06 | 16.55 | 0.01 | 1.989 | 6.48 | 16.52 | 12.1 | 87.6 | 0.3 | -4.00 | 0.77 | 0.84 | 2.96 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 16.11 | 0.01 | 1.971 | 5.86 | 8.23 | 8.7 | 91.2 | 0.1 | -1.86 | 1.60 | 0.79 | 0.86 | 2.56 | 133554 | 5058 | 51 | 4378 | 4 | 0 | 0 | logfile |
✔ | 7RYH | 24740 | 2023-07-13 | 2021-08-25 | 2.43 | 1.94 | — | 2.2 | 0.005 | 0.61 | 0.0 | 0.07 | 15.90 | 0.02 | 1.844 | 3.77 | 2.55 | 2.2 | 97.7 | 0.1 | 1.17 | 0.77 | 0.74 | 2.99 | 1.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.20 | 0.01 | 1.858 | 5.53 | 4.92 | 2.7 | 97.1 | 0.1 | 0.39 | 0.30 | 0.79 | 0.76 | 3.05 | 135829 | 5499 | 53 | 4328 | 8 | 0 | 0 | logfile |
✔ | 8CPM | 16783 | 2023-07-16 | 2023-03-03 | 1.81 | 1.57 | 1.84 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 15.21 | 0.01 | 1.916 | 7.77 | 0.00 | 1.0 | 99.0 | 0.0 | 2.32 | 0.70 | 0.75 | 7.56 | 1.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.38 | 0.00 | 2.043 | 7.22 | 0.11 | 2.3 | 97.7 | 0.0 | 4.30 | 0.37 | 0.71 | 0.77 | 7.46 | 36090 | 4152 | 72 | 0 | 38 | 1972 | 0 | logfile |
✔ | 8CS9 | 26960 | 2023-07-05 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.10 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | 1.6 | 0.003 | 0.66 | 0.0 | 0.04 | 17.83 | 0.00 | 2.112 | 8.08 | 2.56 | 1.7 | 98.3 | 0.0 | 1.72 | 0.39 | 0.83 | 0.83 | 3.42 | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✔ | 7UTZ | 26795 | 2023-07-11 | 2022-04-28 | 2.4 | 2.07 | — | 2.4 | 0.004 | 0.69 | 0.0 | 0.04 | 12.27 | 0.01 | 2.137 | 3.96 | 0.08 | 3.0 | 97.0 | 0.0 | -0.05 | 0.66 | 0.68 | 3.51 | 1.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.20 | 0.00 | 1.878 | 9.89 | 2.26 | 4.4 | 95.6 | 0.0 | -0.39 | 0.77 | 0.72 | 0.77 | 3.66 | 23679 | 1536 | 10 | 0 | 8 | 0 | 11632 | logfile |
✔ | 7S8L | 24896 | 2023-07-04 | 2021-09-18 | 2.45 | 2.08 | 2.46 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 12.22 | 0.00 | 2.238 | 2.45 | 0.00 | 3.5 | 96.5 | 0.0 | 1.27 | 0.81 | 0.80 | 4.28 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.52 | 0.00 | 2.231 | 3.14 | 1.70 | 3.2 | 96.8 | 0.0 | 1.39 | 0.34 | 0.84 | 0.84 | 3.79 | 8177 | 1096 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EN7 | 28269 | 2023-07-11 | 2022-09-28 | 1.68 | 1.48 | 1.71 | 1.6 | 0.012 | 1.29 | 0.0 | 0.07 | 15.67 | 0.01 | 0.731 | 8.76 | 1.27 | 1.2 | 98.8 | 0.0 | 2.40 | 0.61 | 0.75 | 8.54 | 1.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.30 | 0.00 | 2.237 | 5.11 | 0.03 | 1.2 | 98.8 | 0.0 | 5.33 | 0.46 | 0.75 | 0.85 | 7.99 | 37614 | 4128 | 54 | 0 | 6 | 2544 | 0 | logfile |
✔ | 8D33 | 27154 | 2023-07-07 | 2022-05-31 | 2.46 | 2.01 | 2.48 | 1.7 | 0.003 | 0.55 | 0.0 | 0.04 | 13.00 | 0.00 | 2.091 | 4.01 | 0.39 | 3.5 | 96.5 | 0.1 | 0.90 | 0.73 | 0.78 | 3.10 | 1.6 | 0.004 | 0.66 | 0.0 | 0.04 | 18.13 | 0.00 | 2.158 | 7.95 | 3.49 | 3.9 | 96.0 | 0.1 | 0.37 | 1.33 | 0.73 | 0.79 | 3.25 | 15272 | 1784 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 8oM9 | 16971 | 2023-07-06 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.80 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 19.00 | 0.00 | 1.822 | 19.87 | 0.65 | 5.7 | 94.3 | 0.1 | -0.75 | 0.53 | 0.67 | 0.66 | 0.65 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 7SiL | 25143 | 2023-07-06 | 2021-10-14 | 2.7 | 1.97 | — | 1.5 | 0.004 | 0.70 | 0.0 | 0.05 | 13.66 | 0.00 | 2.160 | 6.65 | 0.15 | 2.1 | 97.9 | 0.0 | 0.60 | 0.75 | 0.72 | 3.10 | 1.6 | 0.003 | 0.58 | 0.0 | 0.04 | 16.10 | 0.00 | 2.167 | 8.36 | 1.77 | 2.8 | 97.2 | 0.0 | 0.57 | 0.39 | 0.77 | 0.78 | 2.87 | 12924 | 1564 | 8 | 0 | 34 | 0 | 0 | logfile |
✔ | 7M4U | 23666 | 2023-07-03 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 14.94 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.09 | 0.01 | 1.732 | 5.99 | 2.36 | 3.6 | 96.2 | 0.2 | 0.59 | 1.72 | 0.82 | 0.81 | 3.40 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |
✔ | 8oMA | 16972 | 2023-07-06 | 2023-03-31 | 3.29 | 2.61 | 3.29 | 3.2 | 0.008 | 1.30 | 1.0 | 0.09 | 19.39 | 0.01 | 1.878 | 28.14 | 2.97 | 7.9 | 92.1 | 0.0 | -1.51 | 0.68 | 0.70 | 0.46 | 1.6 | 0.004 | 0.78 | 0.0 | 0.04 | 19.82 | 0.00 | 1.907 | 24.91 | 0.42 | 6.7 | 93.3 | 0.0 | -0.58 | 1.94 | 0.63 | 0.60 | 0.62 | 11379 | 1337 | 6 | 34 | 3 | 0 | 0 | logfile |
✔ | 6Z9F | 11122 | 2023-07-14 | 2020-06-03 | 1.56 | 1.61 | 1.61 | 1.6 | 0.015 | 1.74 | 48.0 | 0.10 | 15.51 | 0.01 | 1.782 | 5.46 | 3.66 | 1.7 | 98.3 | 0.0 | 2.70 | 0.68 | 0.69 | 8.63 | 1.6 | 0.003 | 0.63 | 0.0 | 0.04 | 14.99 | 0.00 | 2.122 | 4.64 | 3.05 | 1.8 | 98.2 | 0.0 | 4.60 | 0.98 | 0.85 | 0.86 | 8.43 | 41020 | 4152 | 72 | 0 | 32 | 4172 | 0 | logfile |
✔ | 7ZGU | 14713 | 2023-07-17 | 2022-04-04 | 3.4 | 2.24 | 3.39 | 2.1 | 0.003 | 0.68 | 0.0 | 0.04 | 14.94 | 0.00 | 2.201 | 11.55 | 0.55 | 6.2 | 93.8 | 0.0 | -0.91 | 0.69 | 0.68 | 1.58 | 1.6 | 0.005 | 0.84 | 0.0 | 0.05 | 17.66 | 0.01 | 2.037 | 16.05 | 1.02 | 7.5 | 92.5 | 0.0 | -1.49 | 1.02 | 0.71 | 0.73 | 1.75 | 38940 | 4854 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7UAF | 26423 | 2023-07-08 | 2022-03-12 | 2.4 | 2.07 | 3.04 | 1.6 | 0.012 | 1.82 | 13.0 | 0.10 | 13.98 | 0.02 | 1.783 | 1.19 | 0.16 | 3.1 | 96.9 | 0.0 | -0.18 | 0.80 | 0.80 | 5.45 | 1.6 | 0.004 | 0.64 | 0.0 | 0.04 | 17.33 | 0.00 | 1.873 | 6.71 | 2.11 | 3.7 | 96.3 | 0.0 | -0.06 | 1.19 | 0.83 | 0.83 | 4.25 | 17864 | 2131 | 22 | 0 | 58 | 0 | 0 | logfile |
✔ | 7UX1 | 26845 | 2023-07-13 | 2022-05-04 | 3.48 | 2.70 | 3.65 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.46 | 0.00 | 2.260 | 6.32 | 0.00 | 2.7 | 97.3 | 0.0 | 3.19 | 0.76 | 0.72 | 1.53 | 1.6 | 0.003 | 0.60 | 0.0 | 0.04 | 13.17 | 0.00 | 1.924 | 7.64 | 0.57 | 3.7 | 96.3 | 0.0 | 2.02 | 0.45 | 0.77 | 0.76 | 1.70 | 28931 | 4991 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BPA | 16147 | 2023-07-05 | 2022-11-16 | 3.7 | 2.50 | 3.80 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 18.50 | 0.01 | 2.127 | 18.60 | 0.97 | 4.0 | 96.0 | 0.0 | 0.00 | 0.69 | 0.65 | 0.97 | 1.6 | 0.003 | 0.80 | 0.0 | 0.04 | 18.78 | 0.01 | 2.140 | 16.42 | 0.53 | 4.4 | 95.6 | 0.0 | 0.14 | 1.61 | 0.69 | 0.66 | 1.15 | 10393 | 1280 | 6 | 0 | 7 | 0 | 0 | logfile |