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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DCX | 27330 | 2023-07-05 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DNE | 27564 | 2023-07-05 | 2022-07-11 | 3.5 | 3.77 | 3.53 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 1.785 | 9.38 | 0.00 | 4.9 | 95.1 | 0.0 | -0.37 | 0.71 | 0.78 | 2.45 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 16.41 | 0.00 | 1.806 | 10.15 | 0.54 | 5.0 | 95.0 | 0.0 | -0.33 | 1.22 | 0.69 | 0.77 | 1.82 | 10281 | 1251 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 8HC7 | 34654 | 2023-07-04 | 2022-11-01 | 4.54 | 4.75 | 4.46 | 4.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.255 | 5.72 | 0.00 | 4.7 | 95.3 | 0.0 | -1.52 | 0.77 | 0.68 | — | 4.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.35 | 0.00 | 2.186 | 13.65 | 0.25 | 7.2 | 92.8 | 0.0 | -1.21 | 1.75 | 0.80 | 0.75 | — | 7373 | 919 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 7XMR | 33302 | 2023-07-04 | 2022-04-26 | 3.1 | 3.31 | 2.93 | 3.3 | 0.001 | 0.40 | 0.0 | 0.04 | 10.86 | 0.00 | 2.250 | 5.63 | 0.00 | 1.6 | 98.4 | 0.0 | -3.39 | 0.52 | 0.64 | 1.08 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.81 | 0.00 | 2.142 | 12.96 | 0.29 | 4.1 | 95.9 | 0.0 | 0.09 | 0.66 | 0.59 | 0.74 | 1.37 | 6611 | 871 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UW8 | 20919 | 2023-07-09 | 2019-11-04 | 4.02 | 4.12 | — | 4.0 | 0.005 | 0.90 | 4.0 | 0.05 | 14.81 | 0.01 | 2.173 | 4.55 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.69 | 0.83 | — | 4.0 | 0.002 | 0.60 | 0.0 | 0.04 | 14.27 | 0.00 | 2.140 | 7.75 | 0.00 | 6.3 | 93.7 | 0.0 | 0.08 | 1.65 | 0.69 | 0.82 | — | 19640 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TJW | 25934 | 2023-07-10 | 2022-01-17 | 4.0 | 3.71 | 4.05 | 3.8 | 0.003 | 0.64 | 0.0 | 0.05 | 12.06 | 0.00 | 1.855 | 2.42 | 0.00 | 2.2 | 97.8 | 0.0 | 0.19 | 0.61 | 0.79 | — | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 15.86 | 0.00 | 1.854 | 9.91 | 0.37 | 3.7 | 96.3 | 0.0 | 0.51 | 0.64 | 0.62 | 0.80 | — | 22500 | 3097 | 12 | 0 | 10 | 0 | 0 | logfile |
✘ | 7Eo4 | 31226 | 2023-07-04 | 2021-04-21 | 2.86 | 2.93 | — | 2.9 | 0.019 | 1.00 | 0.0 | 0.17 | 14.00 | 0.01 | 2.220 | 2.30 | 0.00 | 7.2 | 92.8 | 0.0 | -1.38 | 0.60 | 0.71 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8302 | 1059 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XD6 | 33137 | 2023-07-05 | 2022-03-26 | 2.84 | 3.25 | 2.83 | 3.0 | 0.005 | 0.74 | 0.0 | 0.04 | 15.28 | 0.00 | 1.975 | 1.30 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.86 | — | 3.0 | 0.005 | 0.66 | 0.0 | 0.04 | 16.14 | 0.00 | 1.883 | 7.41 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.32 | 0.88 | 0.89 | — | 9843 | 0 | 3 | 459 | 29 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2023-07-11 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.60 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.60 | 0.00 | 2.026 | 11.75 | 0.32 | 3.9 | 96.1 | 0.0 | 0.50 | 0.72 | 0.80 | 0.87 | 2.40 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7TJT | 25931 | 2023-07-11 | 2022-01-17 | 3.2 | 3.46 | 3.29 | 3.4 | 0.003 | 0.63 | 0.0 | 0.05 | 12.67 | 0.00 | 1.991 | 3.26 | 0.00 | 1.2 | 98.8 | 0.0 | 0.60 | 0.75 | 0.85 | 3.19 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 14.69 | 0.00 | 2.020 | 6.08 | 0.17 | 1.9 | 98.1 | 0.0 | 1.07 | 2.65 | 0.75 | 0.86 | 2.60 | 23129 | 3099 | 11 | 0 | 7 | 0 | 0 | logfile |
✔ | 3JD3 | 6632 | 2023-07-11 | 2016-03-28 | 3.6 | 3.38 | — | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 11.40 | 0.01 | 2.125 | 18.17 | 0.00 | 10.7 | 89.3 | 0.0 | -5.32 | 0.81 | 0.80 | 2.72 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.34 | 0.00 | 2.140 | 12.61 | 0.28 | 4.0 | 96.0 | 0.0 | -0.42 | 1.00 | 0.81 | 0.83 | 2.27 | 24006 | 2976 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7RQX | 24639 | 2023-07-14 | 2021-08-08 | 3.36 | 3.59 | — | 3.5 | 0.012 | 1.06 | 0.0 | 0.06 | 16.98 | 0.01 | 2.227 | 8.03 | 0.00 | 3.4 | 96.6 | 0.0 | -0.29 | 0.67 | 0.75 | 2.39 | 3.5 | 0.003 | 0.48 | 0.0 | 0.03 | 16.18 | 0.00 | 2.021 | 8.41 | 0.07 | 3.9 | 96.1 | 0.0 | 0.47 | 1.13 | 0.67 | 0.80 | 2.59 | 30450 | 2016 | 8 | 0 | 26 | 0 | 14344 | logfile |
✔ | 7RQV | 24637 | 2023-07-16 | 2021-08-08 | 3.45 | 3.65 | — | 3.6 | 0.011 | 0.97 | 0.0 | 0.06 | 15.90 | 0.01 | 2.226 | 7.82 | 0.00 | 4.4 | 95.6 | 0.0 | -0.71 | 0.63 | 0.74 | 2.29 | 3.7 | 0.004 | 0.53 | 0.0 | 0.03 | 15.75 | 0.00 | 2.135 | 8.22 | 0.06 | 5.6 | 94.4 | 0.0 | -0.29 | 0.43 | 0.65 | 0.78 | 2.24 | 34298 | 2320 | 8 | 0 | 22 | 0 | 16236 | logfile |
✔ | 8CXo | 27062 | 2023-07-03 | 2022-05-22 | 3.7 | 4.10 | 3.65 | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 10.02 | 0.00 | 2.329 | 2.39 | 0.00 | 2.7 | 96.9 | 0.4 | 1.90 | 0.60 | 0.77 | 1.79 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.98 | 0.00 | 2.193 | 15.37 | 0.00 | 4.0 | 96.0 | 0.0 | 1.05 | 2.10 | 0.62 | 0.80 | 0.56 | 4392 | 551 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JD0 | 6631 | 2023-07-11 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.40 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.28 | 0.00 | 2.128 | 14.60 | 0.16 | 4.9 | 94.9 | 0.1 | 0.69 | 2.53 | 0.85 | 0.86 | 2.35 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7UML | 26603 | 2023-07-06 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 17.36 | 0.00 | 2.015 | 10.06 | 0.29 | 10.2 | 89.5 | 0.4 | -1.70 | 0.80 | 0.65 | 0.72 | 2.47 | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |
✔ | 6YBP | 10770 | 2023-07-16 | 2020-03-17 | 3.48 | 3.86 | — | 3.8 | 0.038 | 1.47 | 0.0 | 0.05 | 16.08 | 0.01 | 1.664 | 10.99 | 0.00 | 6.4 | 93.6 | 0.0 | -2.69 | 0.74 | 0.85 | 2.36 | 3.8 | 0.005 | 0.62 | 0.0 | 0.04 | 16.19 | 0.00 | 2.172 | 8.40 | 0.27 | 5.1 | 94.9 | 0.0 | -0.84 | 0.39 | 0.74 | 0.86 | 2.15 | 36410 | 4702 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-07-04 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7WVX | 32861 | 2023-07-04 | 2022-02-11 | 2.8 | 2.96 | — | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 12.15 | 0.00 | 2.251 | 8.52 | 0.00 | 2.1 | 97.9 | 0.0 | 0.86 | 0.60 | 0.76 | 2.80 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 15.80 | 0.00 | 2.150 | 11.79 | 2.95 | 3.2 | 96.8 | 0.0 | 0.12 | 1.19 | 0.63 | 0.83 | 3.15 | 7070 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQX | 32095 | 2023-07-05 | 2021-10-21 | 2.74 | 2.89 | — | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.12 | 0.00 | 2.094 | 8.36 | 0.00 | 3.6 | 96.4 | 0.0 | 0.32 | 0.63 | 0.79 | 3.28 | 2.9 | 0.004 | 0.56 | 0.0 | 0.04 | 16.26 | 0.00 | 2.098 | 7.30 | 1.62 | 3.5 | 96.5 | 0.0 | 0.97 | 0.30 | 0.62 | 0.82 | 2.80 | 9049 | 1148 | 6 | 0 | 0 | 0 | 0 | logfile |