Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6E2G	8962	2022-07-04	2018-07-11	3.6	4.05	—	3.9	0.010	1.21	0.0	0.06	11.96	0.01	2.249	4.70	1.05	12.4	87.2	0.4	-5.78	0.69	0.83	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21108	2637	7	0	6	0	0	logfile
✘	6NT3	0500	2022-07-03	2019-01-28	3.4	3.96	3.65	3.9	0.008	1.11	0.0	0.12	16.57	0.01	1.308	11.42	0.53	13.2	86.3	0.5	-4.75	0.50	0.79	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10934	1278	1	0	20	0	0	logfile
✘	6J8i	9782	2022-07-03	2019-01-19	3.2	3.36	—	3.3	0.010	1.50	0.0	0.10	21.92	0.01	1.349	71.43	28.73	2.5	96.2	1.3	2.78	0.59	0.76	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11764	1433	6	0	12	0	0	logfile
✘	6oPC	20149	2022-07-06	2019-04-24	3.7	4.08	—	3.7	0.006	1.06	4.0	0.06	14.45	0.01	1.515	5.03	0.09	8.2	91.1	0.7	-4.20	0.79	0.71	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30015	4455	13	0	48	0	0	logfile
✘	3J5Q	5776	2022-07-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	105.06	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	6oST	20188	2022-07-08	2019-05-02	4.2	5.81	—	3.3	0.009	0.98	3.0	0.05	16.39	0.01	1.170	18.93	0.37	6.9	93.0	0.1	-3.80	0.92	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146620	5996	61	4642	13	0	0	logfile
✘	6oiT	20081	2022-07-03	2019-04-09	3.5	3.59	—	3.6	0.006	1.02	0.0	0.06	11.44	0.01	2.233	5.37	0.45	3.9	96.1	0.0	-2.34	0.74	0.77	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12085	1536	7	0	0	0	0	logfile
✘	6NQ2	0479	2022-07-03	2019-01-18	3.4	3.50	—	3.5	0.009	0.94	0.0	0.06	14.40	0.01	1.185	3.85	0.36	5.1	94.9	0.0	-5.59	0.58	0.83	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	6DZW	8941	2022-07-03	2018-07-05	4.3	4.31	5.22	4.9	0.003	0.84	0.0	0.09	13.51	0.01	1.365	3.87	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7829	988	5	0	4	0	0	logfile
✘	6U1N	20612	2022-07-03	2019-08-16	4.0	4.36	—	4.0	0.007	0.77	0.0	0.04	11.37	0.00	1.188	18.08	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5863	864	5	0	1	0	0	logfile
✘	6C9A	7435	2022-07-03	2018-01-25	3.2	3.34	—	3.3	0.009	1.04	0.0	0.06	10.18	0.01	1.176	2.82	0.00	5.0	95.0	0.0	-4.37	0.59	0.82	3.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12182	1446	4	0	8	0	0	logfile
✘	6Y1Z	10673	2022-07-04	2020-02-14	2.82	3.48	—	3.3	0.002	0.47	0.0	0.04	13.28	0.00	1.216	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16610	1930	10	0	35	0	0	logfile
✘	6oT3	20193	2022-07-08	2019-05-02	3.9	5.27	—	3.3	0.007	0.83	2.0	0.04	15.82	0.01	1.177	11.99	0.28	5.0	94.9	0.1	-3.85	0.92	0.88	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146899	6031	62	4642	14	0	0	logfile
✘	6J8J	9782	2022-07-03	2019-01-19	3.2	3.36	—	3.3	0.010	1.50	0.0	0.10	21.93	0.01	1.349	71.09	28.80	2.5	96.2	1.3	2.79	0.59	0.76	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11764	1433	6	0	12	0	0	logfile
✘	3J5R	5777	2022-07-04	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✘	5NJT	3656	2022-07-06	2017-03-29	3.8	4.18	4.07	4.1	0.008	1.18	0.0	0.06	17.85	0.01	1.178	8.97	1.58	14.2	85.2	0.6	-5.34	0.76	0.78	1.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	133097	5596	51	4579	0	0	0	logfile
✘	6Ni3	9376	2022-07-04	2018-12-26	3.8	4.22	—	4.0	0.010	1.21	0.0	0.07	10.58	0.01	1.201	4.73	0.23	5.3	94.7	0.0	-2.86	0.75	0.76	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1043	6	0	1	0	0	logfile
✘	6NQ0	0477	2022-07-03	2019-01-18	3.7	3.84	—	3.8	0.005	0.83	0.0	0.05	14.50	0.01	1.184	3.70	0.54	4.4	95.6	0.0	-6.31	0.59	0.84	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	6iRS	9721	2022-07-03	2018-11-14	3.3	3.44	—	3.4	0.011	1.35	0.0	0.07	12.97	0.01	2.150	13.18	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7337	926	4	0	10	0	0	logfile
✘	6NT4	0501	2022-07-03	2019-01-28	3.5	4.11	3.77	4.0	0.006	1.07	1.0	0.13	16.47	0.00	1.319	12.94	0.64	12.9	86.7	0.4	-4.72	0.51	0.76	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	4	0	20	0	0	logfile

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