Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5W7G	8780	2022-05-12	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	7.63	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53508	5397	44	504	0	0	0	logfile
✘	6RX4	10049	2022-05-12	2019-06-07	3.3	3.78	3.21	3.8	0.007	1.12	0.0	0.06	11.76	0.01	1.205	5.46	0.14	4.5	95.5	0.0	-4.07	0.67	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7347	884	8	0	31	7	0	logfile
✘	6QEL	4537	2022-05-13	2019-01-08	3.9	4.04	—	4.0	0.011	1.02	0.0	0.05	11.57	0.01	1.292	4.73	0.46	11.6	88.4	0.0	-4.53	0.79	0.76	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64816	4092	24	0	24	0	32302	logfile
✘	6RBE	4795	2022-05-15	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✘	6HWH	0289	2022-05-17	2018-10-12	3.3	3.56	—	3.5	0.012	1.33	1.0	0.07	12.95	0.01	0.691	7.73	0.51	9.4	90.5	0.1	-5.53	0.71	0.82	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile
✘	5XNo	6744	2022-05-13	2017-05-23	3.5	3.75	—	3.6	0.010	1.67	0.0	0.06	15.17	0.02	1.208	9.70	0.00	4.1	95.9	0.0	-2.61	0.60	0.80	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✘	5GW4	9540	2022-05-13	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6QEM	4538	2022-05-13	2019-01-08	3.4	3.53	—	3.5	0.013	1.06	0.0	0.05	12.15	0.01	1.290	4.49	0.51	11.1	88.9	0.0	-4.45	0.74	0.71	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65750	4104	24	26	16	0	32652	logfile
✘	5XNN	6743	2022-05-13	2017-05-23	3.6	3.63	—	3.6	0.007	1.58	0.0	0.06	15.27	0.02	1.211	7.54	0.00	4.3	95.6	0.1	-2.86	0.57	0.79	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✘	5GW5	9541	2022-05-13	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.96	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5NiK	3652	2022-05-17	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.03	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✘	3JCU	6617	2022-05-15	2016-03-10	3.2	3.37	—	3.2	0.012	1.42	0.0	0.06	13.93	0.01	1.210	23.56	0.03	5.0	94.1	1.0	-1.00	0.79	0.84	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✘	6K0A	30036	2022-05-14	2019-05-05	4.6	4.81	—	4.5	0.003	0.70	0.0	0.04	15.45	0.01	2.316	2.94	0.83	5.3	94.7	0.0	-4.65	0.80	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22276	1364	14	516	2	0	0	logfile
✘	6K7L	9939	2022-05-13	2019-06-07	2.83	2.93	2.81	2.9	0.012	1.15	0.0	0.07	15.48	0.01	1.976	4.83	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10615	1317	4	0	8	0	0	logfile
✘	6DUZ	8913	2022-05-15	2018-06-22	3.6	3.88	—	3.8	0.006	0.97	0.0	0.05	11.01	0.01	1.677	4.87	4.35	3.2	96.8	0.0	-4.32	0.76	0.82	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72744	9072	48	0	0	0	0	logfile
✘	6oMB	20124	2022-05-14	2019-04-18	3.7	3.91	—	3.8	0.010	0.96	0.0	0.05	15.28	0.03	1.515	4.75	0.18	7.3	92.7	0.0	-4.26	0.75	0.81	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21815	2775	11	0	48	0	0	logfile
✘	6RUo	10007	2022-05-18	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	8.01	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50792	6086	26	93	8	0	0	logfile
✘	6RBE	4794	2022-05-15	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✘	6EF0	9042	2022-05-15	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	12.59	0.01	2.089	8.62	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24748	3318	20	0	6	0	0	logfile
✘	6TM5	10518	2022-05-13	2019-12-03	3.9	4.07	—	4.1	0.010	1.11	0.0	0.05	15.92	0.01	1.619	28.92	0.76	11.9	87.8	0.3	-4.46	0.36	0.48	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63885	8117	23	0	3	0	0	logfile

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