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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5W7G | 8780 | 2022-05-12 | 2017-06-19 | 4.5 | 4.20 | — | 4.2 | 0.015 | 1.17 | 0.0 | 0.07 | 15.16 | 0.01 | 2.165 | 7.63 | 0.45 | 1.2 | 98.8 | 0.0 | -0.31 | 0.50 | 0.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53508 | 5397 | 44 | 504 | 0 | 0 | 0 | logfile |
✘ | 6RX4 | 10049 | 2022-05-12 | 2019-06-07 | 3.3 | 3.78 | 3.21 | 3.8 | 0.007 | 1.12 | 0.0 | 0.06 | 11.76 | 0.01 | 1.205 | 5.46 | 0.14 | 4.5 | 95.5 | 0.0 | -4.07 | 0.67 | 0.80 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7347 | 884 | 8 | 0 | 31 | 7 | 0 | logfile |
✘ | 6QEL | 4537 | 2022-05-13 | 2019-01-08 | 3.9 | 4.04 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.05 | 11.57 | 0.01 | 1.292 | 4.73 | 0.46 | 11.6 | 88.4 | 0.0 | -4.53 | 0.79 | 0.76 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✘ | 6RBE | 4795 | 2022-05-15 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6HWH | 0289 | 2022-05-17 | 2018-10-12 | 3.3 | 3.56 | — | 3.5 | 0.012 | 1.33 | 1.0 | 0.07 | 12.95 | 0.01 | 0.691 | 7.73 | 0.51 | 9.4 | 90.5 | 0.1 | -5.53 | 0.71 | 0.82 | 4.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40632 | 4916 | 40 | 0 | 420 | 0 | 0 | logfile |
✘ | 5XNo | 6744 | 2022-05-13 | 2017-05-23 | 3.5 | 3.75 | — | 3.6 | 0.010 | 1.67 | 0.0 | 0.06 | 15.17 | 0.02 | 1.208 | 9.70 | 0.00 | 4.1 | 95.9 | 0.0 | -2.61 | 0.60 | 0.80 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-05-13 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6QEM | 4538 | 2022-05-13 | 2019-01-08 | 3.4 | 3.53 | — | 3.5 | 0.013 | 1.06 | 0.0 | 0.05 | 12.15 | 0.01 | 1.290 | 4.49 | 0.51 | 11.1 | 88.9 | 0.0 | -4.45 | 0.74 | 0.71 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65750 | 4104 | 24 | 26 | 16 | 0 | 32652 | logfile |
✘ | 5XNN | 6743 | 2022-05-13 | 2017-05-23 | 3.6 | 3.63 | — | 3.6 | 0.007 | 1.58 | 0.0 | 0.06 | 15.27 | 0.02 | 1.211 | 7.54 | 0.00 | 4.3 | 95.6 | 0.1 | -2.86 | 0.57 | 0.79 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2022-05-13 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.96 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2022-05-17 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.03 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2022-05-15 | 2016-03-10 | 3.2 | 3.37 | — | 3.2 | 0.012 | 1.42 | 0.0 | 0.06 | 13.93 | 0.01 | 1.210 | 23.56 | 0.03 | 5.0 | 94.1 | 1.0 | -1.00 | 0.79 | 0.84 | 3.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 6K0A | 30036 | 2022-05-14 | 2019-05-05 | 4.6 | 4.81 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 15.45 | 0.01 | 2.316 | 2.94 | 0.83 | 5.3 | 94.7 | 0.0 | -4.65 | 0.80 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 1364 | 14 | 516 | 2 | 0 | 0 | logfile |
✘ | 6K7L | 9939 | 2022-05-13 | 2019-06-07 | 2.83 | 2.93 | 2.81 | 2.9 | 0.012 | 1.15 | 0.0 | 0.07 | 15.48 | 0.01 | 1.976 | 4.83 | 0.17 | 7.5 | 92.3 | 0.2 | -3.27 | 0.58 | 0.83 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10615 | 1317 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 6DUZ | 8913 | 2022-05-15 | 2018-06-22 | 3.6 | 3.88 | — | 3.8 | 0.006 | 0.97 | 0.0 | 0.05 | 11.01 | 0.01 | 1.677 | 4.87 | 4.35 | 3.2 | 96.8 | 0.0 | -4.32 | 0.76 | 0.82 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72744 | 9072 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2022-05-14 | 2019-04-18 | 3.7 | 3.91 | — | 3.8 | 0.010 | 0.96 | 0.0 | 0.05 | 15.28 | 0.03 | 1.515 | 4.75 | 0.18 | 7.3 | 92.7 | 0.0 | -4.26 | 0.75 | 0.81 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 6RUo | 10007 | 2022-05-18 | 2019-05-28 | 3.5 | 3.56 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.06 | 13.11 | 0.01 | 2.170 | 8.01 | 0.40 | 10.5 | 89.4 | 0.1 | -4.99 | 0.53 | 0.29 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50792 | 6086 | 26 | 93 | 8 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-05-15 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6EF0 | 9042 | 2022-05-15 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.62 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2022-05-13 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.92 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |