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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LPE | 23479 | 2024-03-16 | 2021-02-11 | 3.72 | 4.18 | 3.77 | 4.0 | 0.011 | 1.29 | 0.0 | 0.06 | 17.20 | 0.01 | 2.219 | 11.71 | 0.00 | 6.1 | 93.9 | 0.0 | -0.86 | 0.60 | 0.67 | 1.26 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 17.55 | 0.00 | 2.064 | 15.01 | 3.97 | 4.8 | 95.2 | 0.0 | 1.04 | 1.28 | 0.62 | 0.70 | 0.94 | 13844 | 1944 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6Ni2 | 9375 | 2024-03-14 | 2018-12-26 | 4.0 | 4.38 | — | 4.1 | 0.010 | 1.33 | 0.0 | 0.07 | 9.61 | 0.01 | 2.245 | 6.60 | 0.00 | 6.7 | 93.1 | 0.1 | -1.50 | 0.75 | 0.71 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.39 | 0.00 | 2.169 | 12.92 | 2.98 | 4.7 | 95.3 | 0.0 | 0.40 | 0.89 | 0.75 | 0.72 | — | 5381 | 704 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3D | 12704 | 2024-03-15 | 2021-04-01 | 3.71 | 4.15 | 3.79 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 13.17 | 0.01 | 2.146 | 6.21 | 0.00 | 4.2 | 95.8 | 0.0 | -0.61 | 0.76 | 0.72 | 1.16 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 15.36 | 0.00 | 2.012 | 8.83 | 0.94 | 4.7 | 95.3 | 0.0 | 0.30 | 0.45 | 0.76 | 0.73 | 1.40 | 11458 | 709 | 1 | 0 | 0 | 0 | 5694 | logfile |
✘ | 7R7T | 24304 | 2024-03-23 | 2021-06-25 | 4.5 | 4.85 | — | 4.6 | 0.004 | 1.02 | 0.0 | 0.06 | 15.88 | 0.01 | 2.286 | 6.32 | 0.00 | 7.8 | 92.2 | 0.0 | -3.13 | 0.81 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35351 | 4470 | 13 | 0 | 12 | 0 | 0 | logfile |
✔ | 7o6B | 12737 | 2024-03-16 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 14.18 | 0.00 | 1.998 | 10.09 | 2.15 | 4.7 | 95.3 | 0.0 | 0.51 | 0.77 | 0.76 | 0.70 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |
✔ | 7STN | 25434 | 2024-03-19 | 2021-11-14 | 3.19 | 3.43 | — | 3.4 | 0.006 | 0.78 | 0.0 | 0.04 | 11.72 | 0.00 | 2.366 | 1.05 | 0.15 | 2.2 | 97.8 | 0.0 | 2.30 | 0.66 | 0.80 | 3.21 | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 13.59 | 0.00 | 2.128 | 3.31 | 1.29 | 3.9 | 96.0 | 0.1 | 1.84 | 1.27 | 0.63 | 0.82 | 2.81 | 25188 | 1580 | 4 | 0 | 10 | 0 | 12256 | logfile |
✔ | 7KAi | 22771 | 2024-03-15 | 2020-10-01 | 3.2 | 3.86 | 3.25 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 12.28 | 0.00 | 2.229 | 4.23 | 0.00 | 3.6 | 96.4 | 0.0 | -1.28 | 0.67 | 0.85 | 2.59 | 3.5 | 0.006 | 0.65 | 0.0 | 0.04 | 14.24 | 0.00 | 2.160 | 6.28 | 1.17 | 3.9 | 96.1 | 0.0 | 1.82 | 0.39 | 0.67 | 0.88 | 1.67 | 10718 | 1343 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 6YoV | 10864 | 2024-03-15 | 2020-04-15 | 3.42 | 4.61 | — | 3.9 | 0.011 | 1.14 | 0.0 | 0.07 | 25.19 | 0.01 | 2.395 | 0.86 | 0.00 | 0.0 | 100.0 | 0.0 | 0.87 | 0.88 | 0.82 | 1.84 | 3.8 | 0.004 | 0.69 | 0.0 | 0.03 | 26.15 | 0.00 | 2.146 | 10.21 | 2.17 | 1.6 | 98.4 | 0.0 | 2.49 | 1.23 | 0.88 | 0.85 | 1.88 | 12298 | 898 | 18 | 262 | 8 | 0 | 0 | logfile |
✔ | 8E4M | 27892 | 2024-03-25 | 2022-08-18 | 3.44 | 3.74 | 3.39 | 3.6 | 0.003 | 0.45 | 0.0 | 0.03 | 10.73 | 0.00 | 2.248 | 6.37 | 0.00 | 1.9 | 98.1 | 0.0 | 3.12 | 0.66 | 0.74 | 1.61 | 3.6 | 0.003 | 0.50 | 0.0 | 0.03 | 13.77 | 0.00 | 2.093 | 8.56 | 2.35 | 3.1 | 96.9 | 0.0 | 2.44 | 0.85 | 0.67 | 0.76 | 1.96 | 49595 | 3524 | 8 | 0 | 12 | 0 | 23500 | logfile |
✔ | 7SR8 | 25399 | 2024-03-14 | 2021-11-08 | 3.3 | 3.26 | — | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 12.33 | 0.01 | 2.134 | 9.25 | 0.00 | 3.4 | 96.6 | 0.0 | 1.51 | 0.59 | 0.76 | 2.19 | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 14.98 | 0.00 | 2.068 | 11.02 | 3.15 | 4.6 | 95.4 | 0.0 | 0.92 | 1.16 | 0.59 | 0.79 | 1.60 | 9083 | 1141 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6KKU | 0703 | 2024-03-11 | 2019-07-27 | 3.5 | 3.59 | — | 3.6 | 0.009 | 1.08 | 0.0 | 0.06 | 18.28 | 0.01 | 2.243 | 2.64 | 0.00 | 4.3 | 95.7 | 0.0 | -3.36 | 0.60 | 0.82 | 3.09 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 13.50 | 0.00 | 2.215 | 7.11 | 1.93 | 2.9 | 97.1 | 0.0 | 1.32 | 0.70 | 0.61 | 0.82 | 1.57 | 8412 | 1074 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7RHQ | 24466 | 2024-03-15 | 2021-07-18 | 3.53 | 3.57 | — | 3.5 | 0.009 | 1.06 | 0.0 | 0.06 | 10.92 | 0.01 | 2.153 | 3.32 | 0.09 | 5.7 | 94.3 | 0.1 | -5.45 | 0.74 | 0.85 | 3.27 | 3.5 | 0.003 | 0.80 | 0.0 | 0.05 | 14.58 | 0.00 | 2.128 | 10.16 | 2.53 | 4.5 | 95.4 | 0.1 | 0.01 | 1.27 | 0.74 | 0.84 | 2.33 | 10499 | 1305 | 8 | 0 | 15 | 0 | 0 | logfile |
✘ | 6S8N | 10125 | 2024-03-11 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.96 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7KAS | 22782 | 2024-03-15 | 2020-10-01 | 3.9 | 4.44 | 4.01 | 4.2 | 0.004 | 0.62 | 0.0 | 0.04 | 13.68 | 0.00 | 2.162 | 6.81 | 0.00 | 3.9 | 96.1 | 0.0 | -1.36 | 0.63 | 0.80 | 1.39 | 4.2 | 0.005 | 0.68 | 0.0 | 0.04 | 15.60 | 0.00 | 2.092 | 9.53 | 2.36 | 3.9 | 96.1 | 0.0 | 1.49 | 0.56 | 0.64 | 0.83 | 1.52 | 10616 | 1329 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 7oG5 | 12878 | 2024-03-16 | 2021-05-06 | 3.37 | 3.57 | — | 3.6 | 0.010 | 0.95 | 0.0 | 0.05 | 14.71 | 0.01 | 2.021 | 19.65 | 0.00 | 10.1 | 89.9 | 0.0 | -1.60 | 0.63 | 0.82 | 2.97 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.91 | 0.00 | 2.095 | 15.05 | 2.09 | 6.9 | 93.1 | 0.0 | 0.59 | 0.59 | 0.59 | 0.80 | 1.74 | 15444 | 1892 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDK | 31546 | 2024-03-11 | 2021-07-16 | 3.69 | 3.82 | — | 3.8 | 0.008 | 0.88 | 0.0 | 0.05 | 15.52 | 0.01 | 2.080 | 18.21 | 0.29 | 13.2 | 86.7 | 0.1 | -4.54 | 0.61 | 0.79 | 1.60 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.151 | 12.96 | 2.03 | 7.5 | 92.4 | 0.1 | -0.82 | 1.23 | 0.60 | 0.76 | 1.33 | 6449 | 791 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7QPA | 14116 | 2024-03-15 | 2022-01-03 | 3.18 | 3.43 | 3.17 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 15.17 | 0.01 | 2.208 | 8.98 | 0.00 | 2.2 | 97.8 | 0.0 | 1.43 | 0.55 | 0.74 | 1.92 | 3.5 | 0.003 | 0.51 | 0.0 | 0.04 | 15.64 | 0.01 | 2.040 | 10.00 | 1.62 | 3.1 | 96.9 | 0.0 | 1.47 | 0.41 | 0.51 | 0.74 | 1.90 | 10814 | 654 | 6 | 0 | 4 | 64 | 5540 | logfile |
✔ | 8BC1 | 15959 | 2024-03-11 | 2022-10-14 | 2.93 | 3.48 | 2.73 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 10.38 | 0.00 | 2.265 | 7.96 | 3.43 | 2.9 | 97.1 | 0.0 | 1.53 | 0.38 | 0.52 | 1.52 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 15.38 | 0.00 | 2.154 | 14.59 | 2.57 | 3.6 | 96.4 | 0.0 | 0.74 | 0.98 | 0.39 | 0.54 | 1.19 | 8684 | 1054 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NHA | 12322 | 2024-03-20 | 2021-02-10 | 2.91 | 3.63 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 14.22 | 0.00 | 1.907 | 8.98 | 0.00 | 4.3 | 95.7 | 0.0 | -0.71 | 0.83 | 0.83 | 3.07 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.94 | 0.00 | 1.945 | 8.37 | 0.79 | 4.1 | 95.9 | 0.0 | 0.07 | 0.97 | 0.83 | 0.85 | 3.02 | 28049 | 1700 | 5 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7BY0 | 30239 | 2024-03-15 | 2020-04-21 | 4.5 | 5.50 | — | 4.5 | 0.008 | 0.97 | 0.0 | 0.05 | 31.23 | 0.01 | 1.950 | 11.25 | 0.15 | 3.1 | 96.9 | 0.0 | -3.59 | 0.92 | 0.87 | — | 4.5 | 0.005 | 0.70 | 0.0 | 0.04 | 30.63 | 0.00 | 2.096 | 22.45 | 0.00 | 5.3 | 94.7 | 0.0 | 0.01 | 1.28 | 0.92 | 0.86 | — | 12693 | 868 | 12 | 286 | 0 | 0 | 0 | logfile |