Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W85	32352	2023-08-20	2021-12-07	2.94	3.13	—	3.1	0.008	0.76	0.0	0.05	13.72	0.00	2.070	9.39	0.00	5.6	94.4	0.0	-0.79	0.64	0.63	2.89	3.1	0.004	0.68	0.0	0.04	16.34	0.00	1.913	9.86	1.46	5.1	94.9	0.0	0.06	1.59	0.75	0.86	2.58	81522	10440	48	0	42	0	0	logfile
✔	7CF9	30343	2023-08-12	2020-06-24	4.7	4.24	5.21	4.0	0.006	1.24	0.0	0.06	16.01	0.01	1.538	5.47	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	4.0	0.003	0.76	0.0	0.04	13.67	0.00	2.032	14.49	0.00	5.5	94.5	0.0	-2.02	1.79	0.81	0.74	—	116104	14416	12	0	1820	0	0	logfile
✔	7R7C	24297	2023-08-13	2021-06-24	3.71	3.61	3.17	3.3	0.002	0.53	0.0	0.04	15.84	0.00	2.134	11.12	0.00	4.8	95.2	0.0	-0.30	0.74	0.77	2.08	3.3	0.005	0.67	0.0	0.04	17.37	0.00	2.088	15.46	0.45	6.1	93.9	0.0	-0.63	0.43	0.75	0.79	1.91	14950	1273	11	226	0	0	0	logfile
✔	8EUi	24423	2023-08-16	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	7ZDT	14669	2023-08-11	2022-03-29	2.71	2.89	2.68	2.9	0.005	0.66	0.0	0.04	13.49	0.00	1.945	6.38	0.00	1.3	98.7	0.0	-0.81	0.76	0.90	3.85	2.9	0.004	0.55	0.0	0.04	15.76	0.00	1.944	5.22	1.28	1.7	98.3	0.0	2.14	0.34	0.74	0.91	3.63	9003	1155	3	0	2	0	0	logfile
✔	8HSJ	34999	2023-08-15	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.81	0.0	0.04	16.44	0.01	1.074	23.89	0.99	3.5	96.2	0.3	-0.24	1.32	0.85	0.73	0.36	17244	2166	12	0	18	0	0	logfile
✔	8ESR	24422	2023-08-12	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	15.69	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.005	0.57	0.0	0.04	15.74	0.00	2.095	10.25	0.32	4.1	95.9	0.1	1.10	0.34	0.78	0.77	2.07	116762	9286	57	2372	1	0	0	logfile
✔	8D0Z	27113	2023-08-17	2022-05-26	3.7	3.01	3.67	3.4	0.021	1.79	0.0	0.10	9.95	0.01	2.116	1.66	0.08	2.9	97.1	0.0	0.76	0.59	0.75	2.57	3.3	0.003	0.65	0.0	0.04	14.88	0.00	2.194	9.42	0.40	4.1	95.9	0.0	0.38	0.87	0.59	0.76	1.98	22566	2878	8	0	11	0	0	logfile
✔	6TDV	10468	2023-08-23	2019-11-10	2.8	3.00	2.85	3.0	0.009	1.08	0.0	0.04	16.68	0.00	2.093	3.34	0.00	2.6	97.4	0.0	-1.24	0.66	0.82	4.29	3.0	0.003	0.63	0.0	0.04	17.08	0.00	1.961	7.68	0.94	1.8	98.2	0.0	1.92	0.78	0.64	0.84	4.01	92262	5464	62	0	61	0	44516	logfile
✔	7UDU	26460	2023-08-14	2022-03-20	4.15	4.18	4.07	4.1	0.004	0.67	0.0	0.05	14.26	0.00	2.186	10.92	0.06	6.0	94.0	0.0	-0.29	0.55	0.65	—	4.1	0.003	0.73	0.0	0.04	14.65	0.00	1.892	13.07	0.18	5.3	94.7	0.0	-0.38	1.44	0.65	0.80	—	15711	1966	9	0	8	0	0	logfile
✔	7YQ4	34019	2023-08-12	2022-08-05	3.95	4.36	4.08	4.3	0.016	1.30	0.0	0.07	17.82	0.02	2.256	4.50	0.53	9.0	91.0	0.0	-4.40	0.72	0.74	1.65	4.3	0.004	0.95	0.0	0.05	18.94	0.01	2.113	10.94	0.79	9.1	90.9	0.0	-2.93	1.12	0.74	0.80	1.46	10618	1243	5	24	0	0	0	logfile
✔	7NVT	12612	2023-08-26	2021-03-16	2.9	3.03	2.87	2.9	0.003	0.47	0.0	0.04	15.56	0.00	1.979	4.90	0.00	2.8	97.2	0.0	1.40	0.75	0.75	3.26	2.9	0.004	0.65	0.0	0.04	18.28	0.00	2.028	11.46	1.72	3.2	96.8	0.0	0.63	2.20	0.78	0.82	2.79	44114	5249	30	100	11	0	0	logfile
✔	7T4X	25691	2023-08-20	2021-12-10	2.8	3.07	2.83	3.1	0.006	0.93	0.0	0.05	12.97	0.01	2.392	0.82	1.52	1.4	98.6	0.0	-0.26	0.66	0.83	3.93	3.1	0.003	0.52	0.0	0.04	14.77	0.00	2.041	5.58	0.38	2.2	97.8	0.0	1.86	0.91	0.67	0.86	3.21	29234	1778	11	0	7	13	14614	logfile
✔	6WUA	21908	2023-08-13	2020-05-04	3.2	2.89	—	2.7	0.007	0.81	0.0	0.05	16.54	0.01	1.992	9.24	14.80	15.4	84.5	0.1	-4.41	0.72	0.80	2.77	2.7	0.005	0.71	0.0	0.04	16.19	0.01	1.987	8.64	0.29	12.8	87.2	0.0	-1.73	1.65	0.75	0.84	2.24	15195	833	9	402	1	0	0	logfile
✔	8EUP	24410	2023-08-19	2022-10-19	3.1	3.34	—	3.2	0.004	0.56	0.0	0.04	17.14	0.00	2.108	12.23	0.40	5.3	94.6	0.1	-0.11	0.72	0.69	1.81	3.2	0.002	0.55	0.0	0.03	17.05	0.00	1.996	13.56	0.35	4.1	95.8	0.1	0.45	0.40	0.73	0.71	1.64	78722	6156	41	1623	1	0	0	logfile
✔	5W7V	8781	2023-08-16	2017-06-20	3.8	3.42	—	3.5	0.007	0.77	0.0	0.06	12.79	0.00	2.365	15.84	0.00	1.4	98.6	0.0	-2.52	0.47	0.74	3.24	3.4	0.006	0.83	0.0	0.06	15.83	0.00	2.285	7.47	2.21	3.3	96.7	0.0	-0.77	1.27	0.54	0.79	3.99	20430	2640	270	0	0	0	0	logfile
✘	7AMY	11827	2023-08-18	2020-10-09	3.75	3.87	3.71	3.8	0.010	0.89	0.0	0.05	14.93	0.00	2.177	20.18	0.66	13.8	85.9	0.3	-5.40	0.82	0.86	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24849	3177	9	0	0	0	0	logfile
✔	6ZFP	11185	2023-08-20	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	9.71	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.002	0.61	0.0	0.04	15.64	0.00	2.202	7.49	0.22	5.8	94.1	0.1	0.31	0.76	0.80	0.77	1.22	29385	3676	1	0	28	0	0	logfile
✔	7KC0	22803	2023-08-15	2020-10-04	3.2	3.58	—	3.3	0.005	0.66	0.0	0.05	15.92	0.00	2.210	11.20	2.90	6.0	94.0	0.0	-3.23	0.84	0.79	1.65	3.3	0.004	0.63	0.0	0.04	17.18	0.00	1.991	13.01	0.29	6.5	93.5	0.0	-1.18	0.53	0.85	0.82	1.75	19553	2334	10	47	4	0	0	logfile
✔	7D84	30612	2023-08-25	2020-10-07	3.7	4.34	3.76	4.2	0.009	0.90	0.0	0.05	15.25	0.01	2.271	6.09	7.78	2.1	97.9	0.0	-2.70	0.84	0.84	2.66	4.2	0.004	0.82	0.0	0.04	17.37	0.00	2.048	13.02	0.56	0.7	99.3	0.0	0.33	1.37	0.82	0.81	2.81	42704	5406	34	0	0	0	0	logfile

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