Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XWP	10634	2021-09-02	2020-01-24	3.38	3.76	—	3.7	0.007	0.72	0.0	0.04	12.99	0.01	2.107	10.65	0.00	6.1	93.9	0.0	-3.13	0.70	0.84	1.88	3.7	0.004	0.69	0.0	0.04	15.24	0.01	2.181	10.14	0.30	3.9	96.1	0.0	1.45	0.51	0.71	0.84	0.81	9552	1280	5	0	0	0	0	logfile
✔	6PQY	20456	2021-09-02	2019-07-10	4.2	5.01	—	4.8	0.007	0.99	0.0	0.06	21.79	0.01	2.225	24.56	0.49	6.8	92.5	0.7	-4.46	0.80	0.78	—	4.8	0.006	0.80	0.0	0.04	21.30	0.01	2.039	24.91	0.00	6.8	93.2	0.0	-1.40	1.71	0.80	0.78	—	8690	920	6	64	0	0	0	logfile
✔	6E9E	9013	2021-09-02	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.5	0.002	0.53	0.0	0.03	13.98	0.00	2.254	5.96	0.13	1.6	98.4	0.0	0.77	1.13	0.78	0.88	3.39	8163	863	3	51	1	0	0	logfile
✔	6DZ7	8931	2021-09-02	2018-07-03	3.89	4.12	—	3.9	0.010	1.25	0.0	0.07	11.48	0.01	2.305	3.57	0.20	11.7	88.3	0.0	-3.82	0.82	0.79	1.93	3.9	0.005	0.79	0.0	0.04	14.53	0.01	2.160	11.63	0.71	10.1	89.9	0.0	0.47	0.86	0.82	0.81	1.79	9284	1148	2	0	0	0	0	logfile
✔	6PWC	20505	2021-09-02	2019-07-22	4.9	5.55	—	4.5	0.003	0.70	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.65	0.0	0.04	5.88	0.00	2.183	10.94	0.00	5.1	94.9	0.0	0.41	2.65	0.64	0.77	—	5879	1055	5	0	0	0	0	logfile
✔	6P49	20247	2021-09-02	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.05	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.015	1.36	0.0	0.05	17.03	0.01	1.954	21.18	0.29	9.8	90.1	0.1	-3.25	1.75	0.56	0.60	1.07	9576	1166	4	0	2	0	0	logfile
✔	6E0H	8948	2021-09-02	2018-07-06	4.05	4.18	—	4.0	0.009	1.16	0.0	0.06	11.25	0.01	2.262	5.16	0.40	7.6	92.4	0.0	-5.82	0.79	0.80	—	4.0	0.003	0.75	0.0	0.04	12.48	0.01	2.158	9.01	0.00	4.9	95.1	0.0	-0.46	0.94	0.79	0.80	—	9524	1172	4	0	4	0	0	logfile
✔	5A6F	3063	2021-09-02	2015-06-25	4.2	5.74	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	8.73	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.8	0.003	0.57	0.0	0.04	10.93	0.00	1.877	12.09	0.00	6.8	93.2	0.0	-0.89	1.04	0.57	0.76	—	8881	540	2	0	43	0	4330	logfile
✔	5H1C	9567	2021-09-02	2016-10-08	4.5	4.34	—	3.8	0.008	1.19	0.0	0.05	15.32	0.00	1.454	41.19	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.003	0.64	0.0	0.04	14.99	0.00	1.949	12.91	0.00	4.1	94.9	1.0	0.60	1.56	0.58	0.82	—	7602	933	8	18	6	0	0	logfile
✔	5H1B	9566	2021-09-02	2016-10-08	4.4	3.94	—	3.6	0.010	1.31	0.0	0.06	14.24	0.01	1.503	53.29	5.67	6.2	91.1	2.6	-1.51	0.59	0.71	—	3.6	0.004	0.73	0.0	0.04	14.84	0.00	2.015	16.19	0.13	4.7	94.4	0.9	0.42	2.97	0.65	0.82	—	7359	924	7	9	6	0	0	logfile
✔	6KZo	0791	2021-09-02	2019-09-25	3.3	3.57	—	3.5	0.019	1.74	3.0	0.21	16.02	0.01	2.196	35.83	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.014	1.32	1.0	0.04	16.57	0.00	2.103	10.59	0.47	3.6	96.3	0.1	0.39	1.33	0.61	0.83	2.07	8238	967	1	0	22	0	0	logfile
✔	6oY3	20221	2021-09-02	2019-05-14	4.0	4.14	—	4.1	0.009	1.10	0.0	0.06	15.73	0.01	2.285	9.28	0.40	6.9	92.9	0.2	-6.09	0.68	0.81	—	4.1	0.005	0.76	0.0	0.04	16.95	0.00	2.227	8.12	0.60	4.9	95.1	0.1	-1.75	0.51	0.70	0.81	—	9534	1188	4	0	4	0	0	logfile
✔	6oSA	20181	2021-09-02	2019-05-01	3.0	3.37	—	3.3	0.008	1.08	0.0	0.06	11.09	0.01	2.210	4.44	0.00	3.5	96.5	0.0	-2.75	0.62	0.78	3.28	3.4	0.003	0.72	0.0	0.04	16.25	0.00	2.129	10.39	3.01	3.6	96.4	0.0	0.76	1.68	0.64	0.80	2.11	7338	937	5	0	0	0	0	logfile
✔	6U1N	20612	2021-09-02	2019-08-16	4.0	4.36	—	4.0	0.009	0.88	0.0	0.04	12.29	0.00	2.198	17.90	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	4.0	0.005	0.76	0.0	0.04	13.59	0.00	2.156	14.39	0.65	5.6	94.4	0.0	-0.67	0.55	0.84	0.82	—	5863	864	5	0	1	0	0	logfile
✔	6NBH	0411	2021-09-02	2018-12-07	3.5	4.06	—	4.0	0.022	1.01	0.0	0.52	8.69	0.00	2.357	1.73	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.004	1.18	0.0	0.16	16.06	0.01	2.200	17.14	0.20	2.7	97.3	0.0	0.66	1.44	0.59	0.76	1.24	9502	1159	7	0	10	0	0	logfile
✔	6PCV	20308	2021-09-02	2019-06-18	3.2	2.93	3.33	3.3	0.006	0.99	0.0	0.06	14.31	0.01	2.235	6.79	0.71	4.0	96.0	0.0	-3.37	0.71	0.72	2.68	3.3	0.006	0.90	0.0	0.05	17.44	0.01	2.163	20.30	0.82	5.3	94.7	0.0	-0.67	1.26	0.73	0.75	2.03	9035	1155	3	0	0	0	0	logfile
✔	6FLT	4276	2021-09-02	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.004	0.62	0.0	0.05	10.15	0.00	2.181	9.65	0.25	19.6	80.4	0.0	-4.60	2.05	0.40	0.78	4.54	8060	580	10	0	0	0	4100	logfile
✔	6H6B	0148	2021-09-02	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.73	5.60	3.2	0.005	0.90	0.0	0.18	11.45	0.00	2.137	6.56	0.25	18.0	82.0	0.0	-3.84	1.14	0.43	0.78	3.92	8060	580	10	0	0	0	4100	logfile
✔	6MLU	9146	2021-09-02	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.17	0.0	0.06	17.85	0.01	2.190	33.81	2.78	15.2	84.8	0.0	-2.46	2.68	0.44	0.77	—	2516	306	2	0	0	0	0	logfile
✔	5A7A	3074	2021-09-02	2015-07-03	4.1	3.87	—	3.9	0.008	1.83	0.0	0.09	20.18	0.01	1.270	102.99	3.97	7.0	93.0	0.0	-3.08	0.56	0.76	—	3.9	0.006	1.01	2.0	0.05	17.13	0.01	2.106	20.82	0.08	9.2	90.8	0.0	-1.96	1.43	0.55	0.76	—	158894	18550	212	318	0	0	0	logfile

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