Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QJH	4563	2022-04-04	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✘	6Mi8	9126	2022-04-04	2018-09-19	4.3	4.20	—	4.2	0.007	1.17	0.0	0.07	11.58	0.01	1.262	6.40	0.13	8.8	91.2	0.0	-5.13	0.56	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7139	911	6	0	2	0	0	logfile
✔	6N0G	9315	2022-04-04	2018-11-07	3.6	3.75	—	3.7	0.008	0.87	0.0	0.06	8.90	0.01	2.232	6.43	0.18	2.7	97.3	0.0	-3.39	0.81	0.85	3.75	3.7	0.004	0.68	0.0	0.04	14.89	0.00	2.089	14.02	0.42	2.2	97.8	0.0	0.20	2.43	0.81	0.86	2.92	55644	7545	57	0	0	0	0	logfile
✔	6JNF	9851	2022-04-04	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.10	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.019	1.84	1.0	0.05	18.38	0.01	1.975	18.89	0.77	12.6	87.4	0.0	-3.61	0.65	0.68	0.82	1.34	7271	924	11	0	1	0	0	logfile
✔	6UET	20756	2022-04-04	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.97	0.0	0.05	22.75	0.01	1.773	50.21	0.00	0.0	0.0	0.0	—	0.77	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	6iAC	4435	2022-04-04	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.38	0.00	2.176	12.19	1.10	8.4	91.6	0.0	-0.57	1.03	0.26	0.76	1.25	8210	1057	11	0	0	0	0	logfile
✔	6S8H	10122	2022-04-04	2019-07-10	3.7	3.89	—	3.8	0.011	1.65	0.0	0.26	17.60	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.003	0.99	0.0	0.09	18.39	0.01	2.147	10.37	0.87	7.3	92.6	0.1	-2.12	2.13	0.67	0.83	1.18	7818	959	6	0	7	0	0	logfile
✔	6HV8	0287	2022-04-04	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.81	0.00	2.114	14.80	0.00	13.7	86.3	0.0	-2.66	1.01	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6UES	20755	2022-04-04	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✘	6J5T	0680	2022-04-04	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	7.02	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	6NSK	0499	2022-04-04	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.11	0.0	0.06	14.47	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.002	0.56	0.0	0.04	14.80	0.00	2.256	5.65	1.96	2.9	97.1	0.0	2.76	0.42	0.62	0.80	3.31	9096	1092	12	0	18	0	0	logfile
✔	6SXA	10337	2022-04-04	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.82	0.0	0.04	15.05	0.00	2.275	11.82	0.14	5.7	94.2	0.1	-0.22	1.72	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	6TJo	10512	2022-04-04	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.79	3.90	2439	321	3	0	0	0	0	logfile
✔	6SUF	10313	2022-04-04	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	1.71	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.008	0.86	3.0	0.04	14.94	0.01	1.861	13.37	0.09	4.2	95.7	0.0	0.23	1.31	0.82	0.84	2.71	108112	13607	6	0	0	0	0	logfile
✔	6AV9	7007	2022-04-04	2017-09-01	3.9	3.83	—	3.8	0.008	1.12	0.0	0.06	12.69	0.01	1.920	37.26	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.013	1.43	1.0	0.05	16.27	0.01	2.017	22.50	0.22	10.9	88.7	0.5	-2.19	1.26	0.59	0.79	1.19	8673	1101	6	0	3	0	0	logfile
✔	6XWQ	10635	2022-04-04	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.77	0.0	0.04	15.44	0.00	2.161	13.51	0.20	3.3	96.7	0.0	1.14	1.17	0.72	0.84	0.62	9572	1281	6	0	0	0	0	logfile
✔	6AVB	7008	2022-04-04	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.81	0.01	2.072	31.04	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.013	1.48	0.0	0.05	15.45	0.01	1.693	24.30	0.00	11.3	88.7	0.0	-2.30	1.70	0.58	0.80	1.83	8673	1101	6	0	3	0	0	logfile
✔	6U2K	20621	2022-04-04	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.72	0.0	0.04	15.07	0.01	2.262	7.00	2.12	8.7	91.3	0.0	-1.93	1.20	0.65	0.81	2.86	4719	604	1	0	4	0	0	logfile
✔	5LY6	4118	2022-04-04	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.48	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6TNG	10532	2022-04-04	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile

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