Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Lii	4053	2023-08-08	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	8C02	16353	2023-08-09	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	4.2	0.004	0.79	0.0	0.04	13.27	0.00	2.201	17.06	0.00	4.3	95.7	0.0	1.78	1.54	0.58	0.77	—	4242	549	2	0	0	0	0	logfile
✔	8EXA	28656	2023-08-09	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	17.45	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.52	0.0	0.03	17.87	0.00	2.219	16.00	1.21	3.6	96.4	0.0	0.46	1.14	0.60	0.68	3.76	5539	341	4	139	0	0	0	logfile
✔	7SC7	25028	2023-08-09	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.67	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.005	0.99	1.0	0.05	16.95	0.01	1.998	23.67	2.66	3.2	96.8	0.0	0.75	0.70	0.72	0.88	1.52	107930	13756	156	0	72	0	0	logfile
✔	6UET	20756	2023-08-09	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.95	0.0	0.05	22.46	0.01	1.737	49.85	0.00	0.0	0.0	0.0	—	0.79	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	7VQ7	32087	2023-08-09	2021-10-19	3.6	3.68	—	3.7	0.007	0.75	0.0	0.04	16.81	0.00	2.070	11.39	4.87	3.9	96.1	0.0	-1.30	0.61	0.81	2.00	3.7	0.003	0.55	0.0	0.04	17.90	0.00	2.170	8.72	0.59	3.0	97.0	0.0	3.61	1.29	0.58	0.80	1.39	6127	778	3	0	1	0	0	logfile
✔	6ZPG	11338	2023-08-09	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	7.0	0.003	0.83	0.0	0.04	15.58	0.00	2.236	19.15	0.00	6.1	93.9	0.0	0.38	1.97	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	8DVU	27745	2023-08-09	2022-07-29	2.9	3.07	2.86	3.0	0.002	0.51	0.0	0.04	13.39	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.004	0.57	0.0	0.04	15.42	0.00	2.030	6.08	2.01	7.8	92.2	0.0	0.24	0.42	0.70	0.84	3.74	6170	669	3	36	3	0	0	logfile
✔	6SUF	10313	2023-08-09	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	1.73	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.004	0.66	1.0	0.04	14.92	0.00	1.996	10.75	0.15	4.0	96.0	0.0	0.49	1.32	0.82	0.84	2.61	108112	13607	6	0	0	0	0	logfile
✔	7QL1	14060	2023-08-09	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	6NT6	0503	2023-08-09	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.002	0.72	0.0	0.04	15.61	0.00	2.295	7.27	0.00	2.7	97.3	0.0	1.43	1.19	0.69	0.80	—	4198	556	2	0	0	0	0	logfile
✔	6N3A	9349	2023-08-09	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.005	0.90	0.0	0.04	18.94	0.00	2.214	16.77	0.68	10.4	89.6	0.0	-5.19	1.68	0.52	0.79	2.83	4310	600	20	0	0	0	0	logfile
✔	8DHA	27434	2023-08-09	2022-06-25	3.8	4.85	4.37	4.8	0.004	0.76	0.0	0.05	17.00	0.01	2.155	15.08	0.49	4.8	95.2	0.0	0.08	0.69	0.73	0.68	4.8	0.004	0.78	0.0	0.05	17.77	0.00	2.108	13.09	0.49	5.8	94.2	0.0	-0.54	0.56	0.69	0.73	0.85	3510	439	5	0	2	0	0	logfile
✔	8oRE	17121	2023-08-09	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.69	0.0	0.05	17.33	0.00	2.218	3.60	1.00	6.7	93.3	0.0	-1.84	3.46	0.37	0.81	5.04	3615	231	3	0	0	0	1845	logfile
✔	8DVS	27744	2023-08-09	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	13.64	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.1	0.002	0.54	0.0	0.04	15.88	0.00	2.201	6.40	2.63	7.4	92.6	0.0	0.64	0.45	0.71	0.85	3.21	6058	682	3	26	3	0	0	logfile
✔	7RTV	24690	2023-08-09	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	6X0U	21984	2023-08-09	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	7XoM	33352	2023-08-09	2022-05-01	3.2	3.57	3.19	3.2	0.002	0.49	0.0	0.04	13.30	0.00	2.175	10.99	0.02	0.9	99.1	0.0	2.16	0.87	0.86	1.74	3.2	0.004	0.57	0.0	0.04	15.12	0.00	2.120	12.24	0.16	1.2	98.7	0.0	2.04	1.29	0.88	0.88	1.52	54129	7336	15	0	32	0	0	logfile
✔	7VQ3	32084	2023-08-09	2021-10-19	3.2	3.40	—	3.4	0.005	0.55	0.0	0.04	14.66	0.00	2.061	5.90	0.00	6.6	93.4	0.0	-0.93	0.65	0.83	2.45	3.4	0.002	0.50	0.0	0.04	16.61	0.00	2.240	6.29	0.00	3.2	96.8	0.0	3.25	0.60	0.63	0.83	1.84	6306	800	2	0	0	0	0	logfile
✔	8iWM	35771	2023-08-09	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.65	0.0	0.04	15.22	0.00	2.254	8.78	1.05	2.2	97.8	0.0	0.48	0.58	0.59	0.77	2.24	1980	271	1	0	1	0	0	logfile

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