Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oG3	20051	2022-11-29	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	7KPW	22990	2022-11-29	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7JLX	22383	2022-11-29	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6CoZ	7545	2022-11-29	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	7WD8	32434	2022-11-29	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	9.18	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.4	0.005	0.82	0.0	0.05	12.56	0.01	2.093	19.99	0.00	7.2	92.6	0.2	-0.59	1.67	0.64	0.68	—	4029	524	4	0	0	0	0	logfile
✔	6QPi	4614	2022-11-29	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✘	7WK8	32562	2022-11-29	2022-01-08	3.61	2.50	—	2.3	0.002	0.52	0.0	0.04	6.81	0.00	2.270	7.76	0.00	4.5	95.3	0.2	-1.21	0.77	0.74	4.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3982	516	4	0	0	0	0	logfile
✔	7oZH	13124	2022-11-29	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.3	0.005	0.74	0.0	0.05	14.80	0.00	2.352	19.62	0.77	10.2	89.8	0.0	-2.61	2.54	0.40	0.70	1.11	3890	580	10	0	0	0	0	logfile
✔	7US9	26729	2022-11-29	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.94	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.65	0.0	0.07	12.21	0.01	2.268	7.40	0.00	3.1	96.9	0.0	-0.01	1.47	0.61	0.77	3.67	1127	145	3	0	4	0	0	logfile
✔	6MST	9232	2022-11-29	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5172	648	12	0	0	0	0	logfile
✔	6CU8	7619	2022-11-29	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	7FiJ	31599	2022-11-29	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	6QJM	4564	2022-11-29	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	7WoG	32651	2022-11-29	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.0	0.003	0.73	0.0	0.04	10.85	0.01	2.047	20.44	0.00	13.8	86.2	0.0	-2.46	1.00	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	6HUD	0274	2022-11-29	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	6.89	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.006	0.86	0.0	0.05	13.22	0.00	2.169	25.57	0.61	11.8	88.2	0.0	-5.00	1.50	0.60	0.80	—	2905	385	5	0	0	0	0	logfile
✘	7ZR8	14886	2022-11-29	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.45	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3693	471	4	0	1	0	0	logfile
✘	7SoF	25269	2022-11-29	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.28	1.0	0.07	8.50	0.01	2.563	1.26	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3735	488	5	0	9	0	0	logfile
✔	3JBS	6478	2022-11-29	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.81	3.18	1401	175	1	0	0	0	0	logfile
✔	6XTB	10618	2022-11-29	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	7P2Q	13172	2022-11-29	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile

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