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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PZ9 | 20528 | 2022-04-04 | 2019-07-31 | 3.65 | 3.90 | — | 3.9 | 0.009 | 1.21 | 0.0 | 0.06 | 12.29 | 0.01 | 2.205 | 3.43 | 0.00 | 6.9 | 93.1 | 0.0 | -3.88 | 0.65 | 0.67 | 2.19 | 3.9 | 0.014 | 1.32 | 1.0 | 0.05 | 14.26 | 0.01 | 2.207 | 10.28 | 0.39 | 4.0 | 96.0 | 0.0 | -0.70 | 1.15 | 0.68 | 0.71 | 0.69 | 7773 | 1196 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HE7 | 0211 | 2022-04-07 | 2018-08-20 | 3.69 | 3.80 | — | 3.8 | 0.039 | 3.60 | 213.0 | 0.21 | 17.65 | 0.03 | 2.081 | 3.03 | 4.93 | 5.6 | 92.9 | 1.6 | -2.44 | 0.64 | 0.70 | 2.28 | 3.8 | 0.012 | 0.89 | 0.0 | 0.05 | 17.48 | 0.00 | 1.904 | 14.11 | 0.16 | 3.1 | 96.8 | 0.1 | -0.09 | 0.88 | 0.63 | 0.78 | 1.62 | 23821 | 3059 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2022-04-04 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.011 | 2.00 | 0.0 | 0.08 | 5.34 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.009 | 1.27 | 0.0 | 0.05 | 9.47 | 0.01 | 2.140 | 24.14 | 0.00 | 24.7 | 74.7 | 0.6 | -4.67 | 1.25 | 0.82 | 0.77 | — | 7307 | 1393 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 6GYP | 0095 | 2022-04-06 | 2018-07-01 | 3.6 | 3.70 | — | 3.7 | 0.006 | 0.95 | 0.0 | 0.05 | 10.75 | 0.01 | 2.259 | 4.80 | 0.50 | 7.1 | 92.8 | 0.1 | -4.51 | 0.57 | 0.68 | 2.48 | 3.7 | 0.004 | 0.73 | 0.0 | 0.04 | 15.05 | 0.00 | 2.162 | 11.66 | 0.40 | 6.1 | 93.8 | 0.0 | -0.54 | 0.79 | 0.74 | 0.82 | 1.49 | 17811 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M64 | 3449 | 2022-04-08 | 2016-10-24 | 4.6 | 4.57 | — | 4.5 | 0.003 | 0.69 | 2.0 | 0.05 | 12.90 | 0.00 | 1.067 | 12.98 | 2.03 | 4.9 | 95.0 | 0.1 | -4.55 | 0.71 | 0.64 | — | 4.5 | 0.005 | 0.86 | 0.0 | 0.05 | 14.31 | 0.01 | 2.035 | 23.62 | 0.00 | 10.1 | 89.9 | 0.0 | -2.30 | 1.00 | 0.76 | 0.73 | — | 35876 | 4383 | 22 | 51 | 6 | 0 | 0 | logfile |
✔ | 6CES | 7464 | 2022-04-06 | 2018-02-12 | 4.0 | 4.18 | — | 4.1 | 0.007 | 1.32 | 0.0 | 0.07 | 12.09 | 0.01 | 2.231 | 7.25 | 0.99 | 16.8 | 82.8 | 0.4 | -5.29 | 0.80 | 0.73 | — | 4.0 | 0.012 | 1.27 | 0.0 | 0.05 | 15.52 | 0.01 | 1.845 | 21.99 | 0.24 | 17.3 | 82.5 | 0.2 | -3.55 | 0.65 | 0.81 | 0.75 | — | 18988 | 2348 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6V0B | 20986 | 2022-04-05 | 2019-11-18 | 4.1 | 4.28 | 4.05 | 4.1 | 0.006 | 0.98 | 0.0 | 0.06 | 15.05 | 0.01 | 2.272 | 8.86 | 0.51 | 7.9 | 92.1 | 0.0 | -4.96 | 0.82 | 0.74 | — | 4.1 | 0.004 | 0.72 | 0.0 | 0.05 | 13.90 | 0.00 | 2.035 | 18.86 | 0.00 | 8.5 | 91.5 | 0.0 | -2.82 | 0.59 | 0.82 | 0.74 | — | 12485 | 1530 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PDW | 20318 | 2022-04-05 | 2019-06-19 | 3.1 | 3.42 | — | 3.3 | 0.005 | 0.81 | 1.0 | 0.05 | 10.94 | 0.01 | 1.792 | 39.14 | 0.74 | 10.7 | 89.3 | 0.1 | -3.33 | 0.76 | 0.79 | 2.84 | 3.3 | 0.003 | 0.78 | 0.0 | 0.04 | 15.24 | 0.00 | 1.928 | 12.41 | 0.49 | 8.6 | 91.4 | 0.0 | -0.93 | 1.74 | 0.76 | 0.81 | 2.03 | 11483 | 1450 | 10 | 0 | 21 | 0 | 0 | logfile |
✔ | 5Z3o | 6880 | 2022-04-06 | 2018-01-08 | 3.62 | 3.82 | — | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 24.28 | 0.00 | 2.055 | 14.54 | 0.44 | 9.3 | 90.7 | 0.1 | -3.57 | 0.88 | 0.81 | 1.22 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 26.63 | 0.00 | 2.018 | 15.40 | 0.26 | 5.5 | 94.3 | 0.2 | -0.16 | 2.08 | 0.89 | 0.84 | 0.77 | 16802 | 1346 | 11 | 292 | 2 | 0 | 0 | logfile |
✔ | 6T1Y | 10363 | 2022-04-05 | 2019-10-07 | 3.3 | 3.22 | 3.26 | 3.3 | 0.018 | 1.62 | 5.0 | 0.08 | 12.34 | 0.01 | 1.332 | 2.81 | 0.32 | 5.2 | 94.8 | 0.0 | -1.04 | 0.71 | 0.84 | 3.29 | 3.3 | 0.004 | 0.71 | 5.0 | 0.04 | 15.95 | 0.00 | 1.980 | 8.28 | 0.38 | 2.6 | 97.4 | 0.0 | 0.31 | 1.77 | 0.68 | 0.85 | 2.71 | 14915 | 1885 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6D05 | 7785 | 2022-04-07 | 2018-04-10 | 3.8 | 3.92 | — | 3.8 | 0.009 | 1.13 | 0.0 | 0.06 | 12.61 | 0.01 | 2.046 | 4.42 | 1.28 | 4.6 | 95.4 | 0.0 | -3.29 | 0.86 | 0.82 | 1.80 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.64 | 0.00 | 1.913 | 8.95 | 0.35 | 4.5 | 95.5 | 0.0 | 0.48 | 3.11 | 0.88 | 0.85 | 1.72 | 28748 | 3572 | 10 | 0 | 26 | 0 | 0 | logfile |
✔ | 6D04 | 7784 | 2022-04-07 | 2018-04-10 | 3.74 | 3.86 | — | 3.8 | 0.008 | 1.07 | 2.0 | 0.06 | 11.62 | 0.01 | 2.001 | 4.28 | 1.21 | 4.6 | 95.4 | 0.0 | -3.02 | 0.86 | 0.84 | 2.26 | 3.8 | 0.004 | 0.63 | 0.0 | 0.04 | 13.89 | 0.00 | 1.961 | 7.85 | 0.19 | 4.1 | 95.9 | 0.0 | 0.60 | 1.98 | 0.88 | 0.86 | 1.82 | 28748 | 3572 | 10 | 0 | 26 | 0 | 0 | logfile |
✔ | 6CET | 7465 | 2022-04-05 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 13.90 | 0.01 | 2.140 | 17.50 | 0.06 | 17.4 | 82.6 | 0.0 | -3.66 | 0.80 | 0.68 | 0.62 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QYZ | 4680 | 2022-04-04 | 2019-03-10 | 4.6 | 2.98 | — | 6.0 | 0.009 | 1.14 | 0.0 | 0.04 | 24.59 | 0.01 | 1.934 | 53.60 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.53 | — | 2.9 | 0.006 | 1.15 | 0.0 | 0.07 | 28.39 | 0.01 | 2.043 | 76.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 4.53 | 0.71 | 0.61 | — | 7300 | 0 | 5 | 345 | 0 | 0 | 0 | logfile |
✔ | 6V5V | 21054 | 2022-04-04 | 2019-12-04 | 3.8 | 4.01 | — | 3.9 | 0.003 | 0.51 | 0.0 | 0.04 | 13.58 | 0.00 | 2.212 | 6.07 | 0.00 | 4.6 | 95.4 | 0.0 | -2.04 | 0.52 | 0.83 | 2.06 | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 14.64 | 0.00 | 2.192 | 7.93 | 0.30 | 3.2 | 96.8 | 0.0 | 0.28 | 0.57 | 0.53 | 0.82 | 1.76 | 2979 | 369 | 1 | 1 | 0 | 0 | 0 | logfile |
✔ | 5LNK | 4093 | 2022-04-05 | 2016-08-04 | 3.9 | 3.95 | — | 3.9 | 0.007 | 1.05 | 0.0 | 1.04 | 10.81 | 0.01 | 2.038 | 25.39 | 0.32 | 12.6 | 86.9 | 0.5 | -4.85 | 0.76 | 0.79 | 1.96 | 3.9 | 0.013 | 1.93 | 4.0 | 0.32 | 16.79 | 0.01 | 1.686 | 26.78 | 0.72 | 11.1 | 88.5 | 0.4 | -1.76 | 0.90 | 0.77 | 0.79 | 0.83 | 63760 | 7918 | 61 | 0 | 144 | 0 | 0 | logfile |
✔ | 6DKF | 7952 | 2022-04-06 | 2018-05-29 | 3.7 | 3.47 | — | 3.8 | 0.010 | 0.88 | 0.0 | 0.05 | 8.96 | 0.00 | 1.761 | 11.87 | 0.00 | 3.9 | 96.1 | 0.0 | -5.10 | 0.73 | 0.76 | 2.82 | 3.7 | 0.004 | 0.76 | 0.0 | 0.05 | 16.54 | 0.00 | 2.119 | 13.99 | 0.54 | 2.2 | 97.8 | 0.0 | -0.05 | 1.78 | 0.74 | 0.79 | 1.87 | 17060 | 2314 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHL | 21207 | 2022-04-04 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 16.88 | 0.01 | 2.268 | 9.54 | 0.00 | 11.3 | 88.7 | 0.0 | -3.65 | 2.64 | 0.28 | 0.69 | 3.54 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoF | 20414 | 2022-04-08 | 2019-07-03 | 4.3 | 4.41 | — | 4.3 | 0.006 | 0.95 | 0.0 | 0.06 | 14.30 | 0.01 | 2.196 | 6.57 | 0.39 | 6.6 | 93.3 | 0.1 | -4.95 | 0.76 | 0.67 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.05 | 13.70 | 0.00 | 2.055 | 13.59 | 0.30 | 6.7 | 93.3 | 0.1 | -1.78 | 0.74 | 0.76 | 0.68 | — | 31624 | 4084 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D03 | 7783 | 2022-04-07 | 2018-04-10 | 3.68 | 3.89 | — | 3.8 | 0.009 | 1.18 | 2.0 | 0.06 | 12.21 | 0.01 | 1.960 | 4.25 | 1.12 | 5.3 | 94.6 | 0.1 | -3.65 | 0.85 | 0.85 | 3.19 | 3.8 | 0.007 | 0.82 | 0.0 | 0.05 | 14.76 | 0.00 | 1.941 | 7.43 | 0.07 | 4.2 | 95.8 | 0.0 | -0.27 | 0.60 | 0.85 | 0.86 | 1.83 | 24844 | 3106 | 9 | 0 | 26 | 0 | 0 | logfile |