Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W4F	32303	2023-08-15	2021-11-27	2.7	2.82	—	2.8	0.008	0.82	1.0	0.04	18.28	0.01	2.201	6.62	1.59	3.8	96.2	0.1	0.96	0.79	0.89	3.43	2.8	0.003	0.57	0.0	0.04	17.61	0.00	2.145	6.11	2.22	3.5	96.4	0.1	1.12	0.26	0.78	0.89	3.43	68192	8270	70	0	46	0	0	logfile
✘	5NUG	3698	2023-08-26	2017-04-30	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46232	5840	4	0	10	0	0	logfile
✔	7Nii	12360	2023-08-24	2021-02-12	2.88	3.06	—	3.0	0.006	0.69	0.0	0.04	11.05	0.00	1.216	12.41	0.00	3.4	96.6	0.1	-2.73	0.76	0.85	3.60	3.0	0.003	0.68	0.0	0.04	14.36	0.00	1.983	8.08	1.40	3.5	96.5	0.0	1.05	1.35	0.77	0.89	2.91	37235	4772	16	0	16	0	0	logfile
✔	6RUi	10006	2023-08-27	2019-05-28	2.7	2.78	—	2.8	0.010	1.10	1.0	0.06	12.87	0.01	2.098	6.55	0.81	7.3	92.6	0.0	-4.42	0.66	0.73	3.26	2.8	0.003	0.66	0.0	0.04	17.63	0.00	2.134	10.54	2.60	5.8	94.2	0.0	-0.83	1.69	0.72	0.77	2.34	51525	6179	21	94	1	0	0	logfile
✔	7YAC	33708	2023-08-11	2022-06-27	3.24	2.68	3.20	3.0	0.003	0.77	0.0	0.04	14.58	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.0	0.002	0.60	0.0	0.04	16.62	0.00	2.219	7.08	0.31	4.8	95.2	0.0	-0.05	1.26	0.65	0.81	1.87	8937	1140	6	0	1	0	0	logfile
✔	7NK9	12434	2023-08-15	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.55	0.0	0.04	15.16	0.00	2.081	6.69	1.39	0.9	99.1	0.0	3.96	0.45	0.68	0.88	1.31	18081	1225	14	0	0	0	9158	logfile
✔	7JKQ	22367	2023-08-14	2020-07-28	3.3	3.23	—	3.3	0.007	1.22	1.0	0.07	14.74	0.01	2.238	6.34	0.00	6.2	93.8	0.0	-3.03	0.70	0.80	3.30	3.3	0.003	0.66	0.0	0.04	16.33	0.00	2.069	12.87	0.45	5.7	94.3	0.0	-0.96	1.02	0.67	0.83	3.07	16437	2048	4	0	0	0	0	logfile
✔	6SXA	10337	2023-08-10	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7U6o	26377	2023-08-20	2022-03-04	3.2	4.03	3.21	3.6	0.003	0.58	0.0	0.04	13.73	0.00	2.152	17.72	0.06	3.9	96.1	0.0	0.12	0.85	0.79	1.37	3.7	0.004	0.71	0.0	0.04	15.09	0.00	2.060	20.03	0.06	3.5	96.5	0.0	0.60	0.43	0.86	0.81	1.14	29424	3816	6	0	0	0	0	logfile
✘	6H4N	0137	2023-08-30	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	5.99	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147282	6188	57	4636	0	0	0	logfile
✔	7QDR	13923	2023-08-17	2021-11-29	3.7	3.84	3.50	3.7	0.006	0.84	0.0	0.05	14.04	0.01	2.021	12.64	0.00	5.9	94.0	0.1	-1.43	0.81	0.86	2.06	3.7	0.002	0.65	0.0	0.04	15.68	0.00	2.139	8.12	0.25	9.6	90.4	0.0	-0.24	1.15	0.80	0.84	1.80	22818	2991	4	0	0	0	0	logfile
✔	7W9C	32364	2023-08-20	2021-12-09	3.2	3.43	—	3.5	0.004	0.61	0.0	0.04	12.69	0.00	2.079	1.76	0.00	2.8	97.2	0.0	-3.72	0.64	0.69	2.04	3.4	0.003	0.60	0.0	0.04	15.92	0.00	2.159	8.97	0.30	3.2	96.8	0.0	-0.17	1.46	0.67	0.76	1.63	29737	3777	4	0	0	0	0	logfile
✔	7RZA	24756	2023-08-19	2021-08-27	4.26	4.24	—	4.2	0.007	0.98	0.0	0.05	11.12	0.01	2.247	4.48	0.53	4.3	95.7	0.0	-4.39	0.70	0.74	—	4.2	0.003	0.63	0.0	0.04	12.35	0.00	2.153	10.00	0.07	4.5	95.5	0.0	-0.12	1.26	0.71	0.75	—	27850	3532	8	0	4	0	0	logfile
✔	6RRD	4987	2023-08-27	2019-05-17	3.1	3.17	—	3.1	0.008	1.09	0.0	0.06	12.67	0.01	2.072	6.12	0.40	8.1	91.8	0.0	-4.92	0.72	0.74	3.13	3.1	0.004	0.68	0.0	0.04	16.77	0.00	2.103	10.91	0.31	6.7	93.3	0.0	-1.30	1.69	0.75	0.79	2.04	51631	6179	21	99	1	0	0	logfile
✔	7E2i	30958	2023-08-11	2021-02-05	4.07	4.31	—	4.1	0.006	0.82	0.0	0.05	14.31	0.00	2.056	20.89	0.00	11.7	88.2	0.1	-4.32	0.62	0.79	—	4.2	0.004	0.81	0.0	0.04	14.31	0.00	2.147	15.65	0.00	10.3	89.7	0.0	-1.49	1.29	0.60	0.77	—	8569	1058	4	0	12	0	0	logfile
✔	7W4o	32310	2023-08-10	2021-11-28	2.96	2.49	—	3.1	0.006	0.74	0.0	0.05	11.82	0.01	2.150	4.63	2.15	2.9	97.0	0.1	-0.13	0.81	0.82	2.93	3.1	0.005	0.61	0.0	0.04	15.23	0.00	1.930	10.43	2.83	2.7	97.1	0.2	1.19	0.65	0.81	0.84	2.74	54748	6944	12	0	20	0	0	logfile
✔	7BQT	30155	2023-08-24	2020-03-25	4.8	4.89	—	4.8	0.006	1.07	0.0	0.06	15.96	0.01	2.230	11.08	0.66	6.3	93.7	0.0	-4.15	0.57	0.79	—	4.8	0.004	0.87	0.0	0.05	14.20	0.01	2.011	22.93	0.00	6.9	93.1	0.0	-2.67	1.94	0.55	0.78	—	39180	4860	12	0	0	0	0	logfile
✘	7E32	30974	2023-08-10	2021-02-07	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8797	1117	5	0	2	0	0	logfile
✔	8GZG	34397	2023-08-26	2022-09-27	3.13	3.23	3.17	3.2	0.003	0.58	0.0	0.04	15.48	0.00	2.178	3.28	0.11	3.7	96.3	0.0	-5.06	0.74	0.77	2.41	3.2	0.004	0.63	0.0	0.04	17.72	0.00	1.987	7.42	0.36	4.6	95.4	0.0	-1.11	0.58	0.80	0.85	2.46	29503	3624	12	99	3	0	0	logfile
✔	8AVG	15682	2023-08-13	2022-08-26	4.01	3.61	3.84	3.5	0.003	0.70	0.0	0.05	14.67	0.00	2.189	13.04	0.07	9.3	90.5	0.2	-2.48	0.79	0.73	—	3.5	0.002	0.57	0.0	0.05	14.67	0.00	2.105	10.32	0.07	7.7	92.3	0.1	-2.17	0.30	0.79	0.73	—	13746	1732	3	0	2	0	0	logfile

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