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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5KMG | 8266 | 2024-03-11 | 2016-06-27 | 3.5 | 4.13 | — | 4.0 | 0.019 | 1.34 | 0.0 | 0.10 | 13.69 | 0.02 | 1.894 | 3.71 | 0.00 | 5.8 | 92.0 | 2.2 | -1.01 | 0.49 | 0.75 | 2.38 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 17.25 | 0.00 | 1.879 | 12.64 | 2.04 | 3.7 | 96.3 | 0.0 | 1.30 | 1.01 | 0.47 | 0.79 | 2.25 | 111594 | 13860 | 70 | 14 | 42 | 0 | 0 | logfile |
✔ | 6D5F | 7797 | 2024-03-17 | 2018-04-19 | 3.7 | 3.84 | — | 3.8 | 0.010 | 1.05 | 0.0 | 0.06 | 15.58 | 0.01 | 2.134 | 4.86 | 0.37 | 8.4 | 91.3 | 0.3 | -4.38 | 0.53 | 0.86 | 2.88 | 3.8 | 0.005 | 0.73 | 1.0 | 0.04 | 17.70 | 0.00 | 1.816 | 12.59 | 2.77 | 7.5 | 92.5 | 0.0 | -0.30 | 1.71 | 0.53 | 0.87 | 1.34 | 79946 | 8450 | 54 | 672 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2024-03-20 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.71 | 0.00 | 2.025 | 15.05 | 6.23 | 11.5 | 87.0 | 1.5 | -1.78 | 0.87 | 0.61 | 0.82 | 2.51 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DPV | 7974 | 2024-03-24 | 2018-06-09 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.46 | 6.0 | 0.08 | 16.61 | 0.01 | 1.972 | 2.29 | 2.21 | 3.4 | 96.6 | 0.0 | 0.41 | 0.65 | 0.82 | 3.14 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 18.09 | 0.00 | 1.989 | 8.39 | 2.97 | 3.2 | 96.8 | 0.0 | 0.97 | 0.79 | 0.63 | 0.85 | 2.96 | 40506 | 5124 | 24 | 6 | 12 | 0 | 0 | logfile |
✔ | 6DPU | 7973 | 2024-03-24 | 2018-06-09 | 3.1 | 3.21 | — | 3.3 | 0.009 | 1.53 | 6.0 | 0.09 | 16.46 | 0.01 | 1.913 | 1.97 | 3.17 | 2.5 | 97.3 | 0.2 | -0.07 | 0.65 | 0.81 | 2.90 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 17.76 | 0.00 | 1.948 | 7.56 | 3.28 | 2.9 | 97.1 | 0.0 | 0.38 | 1.38 | 0.64 | 0.84 | 2.80 | 40650 | 5142 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7ZTC | 14957 | 2024-03-20 | 2022-05-09 | 3.9 | 3.69 | 3.89 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.123 | 5.33 | 0.00 | 6.9 | 93.1 | 0.0 | -2.20 | 0.71 | 0.82 | 3.21 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 15.03 | 0.00 | 2.188 | 7.34 | 1.21 | 3.0 | 97.0 | 0.0 | -0.34 | 2.52 | 0.71 | 0.83 | 2.06 | 25652 | 2920 | 20 | 0 | 548 | 0 | 0 | logfile |
✔ | 6DPW | 7975 | 2024-03-24 | 2018-06-09 | 3.5 | 3.71 | — | 3.7 | 0.009 | 1.43 | 0.0 | 0.08 | 15.58 | 0.01 | 2.040 | 2.61 | 0.82 | 2.3 | 97.6 | 0.1 | 0.22 | 0.68 | 0.85 | 2.68 | 3.7 | 0.004 | 0.68 | 1.0 | 0.04 | 17.13 | 0.00 | 1.869 | 9.04 | 2.80 | 1.6 | 98.4 | 0.0 | 1.33 | 1.57 | 0.66 | 0.84 | 2.45 | 40812 | 5154 | 24 | 0 | 18 | 0 | 0 | logfile |
✔ | 7PLH | 13489 | 2024-03-16 | 2021-08-31 | 3.57 | 3.84 | — | 3.8 | 0.011 | 1.67 | 14.0 | 0.10 | 22.70 | 0.01 | 1.901 | 13.37 | 8.98 | 1.9 | 98.1 | 0.0 | -2.29 | 0.48 | 0.77 | 1.50 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 19.76 | 0.00 | 1.894 | 11.19 | 3.26 | 2.9 | 97.1 | 0.0 | 0.19 | 3.43 | 0.48 | 0.84 | 1.64 | 15542 | 1820 | 16 | 44 | 14 | 0 | 0 | logfile |
✔ | 6PYT | 20526 | 2024-03-25 | 2019-07-30 | 2.9 | 2.66 | — | 2.9 | 0.009 | 1.01 | 0.0 | 0.06 | 10.88 | 0.01 | 2.212 | 4.73 | 0.94 | 9.5 | 90.5 | 0.0 | -4.57 | 0.47 | 0.79 | 3.58 | 2.9 | 0.003 | 0.66 | 0.0 | 0.04 | 17.30 | 0.00 | 2.089 | 8.44 | 6.17 | 8.2 | 91.8 | 0.0 | -1.57 | 1.66 | 0.50 | 0.82 | 3.39 | 49920 | 6624 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YEG | 10792 | 2024-03-16 | 2020-03-24 | 4.0 | 3.79 | 4.25 | 3.5 | 0.006 | 1.08 | 0.0 | 0.05 | 12.04 | 0.01 | 2.293 | 11.31 | 0.85 | 15.4 | 84.4 | 0.2 | -5.46 | 0.46 | 0.58 | — | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 14.17 | 0.00 | 2.118 | 16.20 | 1.46 | 12.8 | 87.2 | 0.0 | -3.98 | 1.28 | 0.55 | 0.68 | — | 15756 | 2064 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Do4 | 27590 | 2024-03-18 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 17.01 | 0.00 | 2.142 | 12.07 | 3.64 | 3.5 | 96.5 | 0.0 | -0.31 | 0.73 | 0.71 | 0.72 | 1.36 | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ETU | 28599 | 2024-03-20 | 2022-10-17 | 2.8 | 2.33 | 2.89 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 17.82 | 0.01 | 1.580 | 5.60 | 0.06 | 3.5 | 96.5 | 0.0 | -1.69 | 0.73 | 0.79 | 2.09 | 2.0 | 0.003 | 0.63 | 0.0 | 0.04 | 18.29 | 0.00 | 2.161 | 7.35 | 2.53 | 2.5 | 97.5 | 0.0 | 0.28 | 0.54 | 0.83 | 0.85 | 2.16 | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Y6K | 33642 | 2024-03-11 | 2022-06-20 | 3.34 | 3.42 | 3.31 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 14.23 | 0.01 | 2.222 | 15.89 | 0.57 | 4.9 | 95.1 | 0.0 | -1.02 | 0.70 | 0.79 | 2.98 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 15.36 | 0.00 | 2.095 | 16.13 | 4.14 | 4.6 | 95.4 | 0.0 | -0.60 | 1.83 | 0.71 | 0.82 | 3.08 | 6363 | 834 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8oPN | 17077 | 2024-03-20 | 2023-04-07 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28543 | 3555 | 13 | 0 | 40 | 0 | 0 | logfile |
✔ | 8FNK | 29316 | 2024-03-21 | 2022-12-27 | 3.7 | 4.05 | 3.77 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 18.34 | 0.00 | 2.198 | 10.18 | 0.32 | 3.9 | 96.1 | 0.0 | 0.42 | 0.77 | 0.75 | 0.86 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 18.71 | 0.00 | 2.108 | 10.38 | 3.70 | 4.5 | 95.5 | 0.0 | 1.04 | 0.41 | 0.78 | 0.78 | 0.81 | 30831 | 3656 | 11 | 94 | 0 | 0 | 0 | logfile |
✔ | 8iEM | 35386 | 2024-03-11 | 2023-02-15 | 3.35 | 3.87 | 3.59 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.41 | 0.01 | 2.211 | 7.27 | 0.58 | 6.2 | 93.7 | 0.1 | -1.00 | 0.51 | 0.55 | -0.19 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 17.31 | 0.01 | 2.071 | 9.90 | 3.36 | 8.0 | 92.0 | 0.0 | -1.17 | 0.92 | 0.56 | 0.72 | 0.73 | 7829 | 1011 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 3JAR | 6351 | 2024-03-24 | 2015-06-19 | 3.4 | 3.64 | — | 3.6 | 0.008 | 1.38 | 6.0 | 0.08 | 16.19 | 0.01 | 1.923 | 1.68 | 1.82 | 2.6 | 97.2 | 0.2 | 0.27 | 0.69 | 0.87 | 3.14 | 3.6 | 0.004 | 0.67 | 1.0 | 0.04 | 16.76 | 0.00 | 1.897 | 7.39 | 2.18 | 2.2 | 97.8 | 0.0 | 1.21 | 1.51 | 0.66 | 0.87 | 2.60 | 43024 | 5428 | 26 | 6 | 12 | 0 | 0 | logfile |
✔ | 8ooF | 17012 | 2024-03-10 | 2023-04-05 | 2.9 | 1.91 | 3.05 | 2.8 | 0.004 | 0.71 | 0.0 | 0.05 | 13.65 | 0.01 | 2.043 | 2.60 | 0.00 | 2.9 | 97.1 | 0.0 | -0.80 | 0.84 | 0.83 | 4.92 | 2.6 | 0.004 | 0.63 | 0.0 | 0.04 | 16.26 | 0.00 | 1.987 | 7.68 | 2.14 | 3.5 | 96.5 | 0.0 | 0.63 | 1.96 | 0.85 | 0.84 | 4.57 | 4479 | 556 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6C1D | 7329 | 2024-03-18 | 2018-01-04 | 3.2 | 3.76 | 3.12 | 3.3 | 0.010 | 1.22 | 4.0 | 0.08 | 11.59 | 0.01 | 1.605 | 9.68 | 1.06 | 8.2 | 91.8 | 0.0 | -4.37 | 0.63 | 0.78 | 2.35 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 13.96 | 0.00 | 1.951 | 11.55 | 1.57 | 6.8 | 93.2 | 0.0 | 0.27 | 0.75 | 0.66 | 0.88 | 1.94 | 21049 | 2758 | 14 | 0 | 13 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2024-03-12 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.60 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.2 | 0.005 | 0.99 | 6.0 | 0.05 | 21.31 | 0.01 | 1.530 | 17.41 | 7.20 | 8.1 | 90.0 | 1.9 | -2.56 | 1.23 | 0.56 | 0.79 | 1.87 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |