Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BVC	30216	2021-11-02	2020-04-10	2.9	3.37	2.95	3.3	0.008	1.18	2.0	0.15	13.79	0.01	2.134	5.95	0.17	8.2	91.6	0.1	-4.30	0.68	0.85	3.17	3.3	0.010	1.20	2.0	0.04	15.35	0.01	2.150	5.80	1.14	6.8	93.1	0.0	-1.55	0.98	0.71	0.88	2.94	17206	2231	5	0	8	0	0	logfile
✔	7JJi	22352	2021-11-04	2020-07-26	3.6	4.10	3.68	4.0	0.021	1.78	0.0	0.13	11.50	0.01	2.399	1.03	0.21	1.6	98.4	0.0	0.52	0.84	0.85	3.62	4.0	0.003	0.59	0.0	0.04	13.47	0.00	2.213	5.67	0.31	3.1	96.9	0.0	0.30	0.75	0.81	0.85	3.07	27459	3327	51	0	99	0	0	logfile
✔	6WU2	21903	2021-11-02	2020-05-04	3.36	3.76	3.55	3.7	0.010	0.72	0.0	0.05	14.78	0.00	2.074	6.87	0.76	7.8	92.0	0.2	-3.14	0.61	0.86	3.65	3.7	0.003	0.59	0.0	0.04	15.98	0.00	2.026	9.11	0.00	5.6	94.1	0.2	0.82	0.65	0.63	0.88	2.45	15404	978	4	0	10	0	7812	logfile
✔	6XEY	22156	2021-11-04	2020-06-14	3.25	3.61	3.07	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.61	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.2	0.003	0.56	0.0	0.04	13.58	0.00	2.130	6.65	0.15	4.7	95.3	0.0	-0.40	0.35	0.89	0.85	2.37	28482	3788	24	0	63	0	0	logfile
✔	6Y6X	10709	2021-11-05	2020-02-27	2.8	2.76	—	2.7	0.009	1.04	0.0	0.05	16.90	0.01	1.914	4.55	0.96	7.0	92.7	0.3	-2.80	0.80	0.87	3.06	2.7	0.005	0.68	0.0	0.04	16.81	0.01	1.612	10.27	2.78	6.9	93.0	0.1	-0.40	0.55	0.82	0.90	2.96	140969	6788	60	4049	235	0	0	logfile
✔	6Z6N	11100	2021-11-19	2020-05-28	2.9	3.09	—	2.8	0.009	0.95	0.0	0.05	16.87	0.01	1.937	7.89	0.59	7.8	92.0	0.2	-3.23	0.85	0.81	2.55	2.8	0.007	0.79	1.0	0.04	17.33	0.01	1.664	17.49	3.39	8.0	91.9	0.1	-1.37	1.15	0.86	0.82	2.27	228566	12938	102	5863	264	0	0	logfile
✔	6KMF	0724	2021-11-01	2019-07-31	3.6	3.51	—	4.0	0.006	0.90	0.0	0.06	14.66	0.01	2.298	5.31	0.62	13.4	86.6	0.0	-4.41	0.52	0.80	2.69	4.0	0.004	0.71	0.0	0.04	16.26	0.01	2.170	10.29	0.62	9.1	90.9	0.0	-2.94	0.50	0.52	0.79	2.58	7704	1011	4	0	0	0	0	logfile
✔	6WU3	21904	2021-11-02	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	9.10	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.003	0.57	0.0	0.03	15.89	0.00	2.020	8.95	0.43	5.4	94.6	0.0	1.25	1.86	0.61	0.87	2.90	13610	890	2	0	0	0	6936	logfile
✔	6X9o	22106	2021-11-03	2020-06-03	2.6	2.80	2.63	2.7	0.006	0.81	1.0	0.05	15.46	0.00	1.953	15.07	0.56	6.3	93.4	0.3	-2.11	0.79	0.86	2.75	2.7	0.003	0.64	0.0	0.04	17.09	0.00	2.119	9.34	1.63	4.3	95.5	0.2	1.85	1.33	0.78	0.88	2.49	20899	2669	2	0	0	0	0	logfile
✘	6WBN	21594	2021-11-05	2020-03-26	2.83	3.46	—	3.1	0.024	1.22	0.0	0.51	16.38	0.00	1.202	12.73	0.80	4.5	95.5	0.0	-0.59	0.78	0.82	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38402	4774	28	0	84	0	0	logfile
✔	6WWZ	21950	2021-11-01	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.07	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.004	0.63	0.0	0.04	15.11	0.00	2.185	2.92	0.29	2.7	97.3	0.0	0.22	1.07	0.73	0.86	2.78	9450	1211	6	0	0	0	0	logfile
✔	6VN1	21247	2021-11-04	2020-01-29	2.8	2.97	2.75	3.0	0.006	0.63	0.0	0.05	13.28	0.00	2.123	7.67	0.00	6.3	93.7	0.0	-3.36	0.70	0.80	3.79	3.0	0.004	0.66	0.0	0.05	16.03	0.00	2.170	7.10	2.59	6.3	93.7	0.0	-1.16	0.45	0.29	0.20	3.44	19524	2454	9	0	0	0	0	logfile
✔	6XiR	22198	2021-11-10	2020-06-21	3.2	3.43	3.14	3.3	0.007	0.85	0.0	0.04	16.88	0.01	0.432	6.28	0.09	10.9	88.9	0.3	-4.22	0.74	0.83	2.14	3.3	0.006	0.73	0.0	0.04	17.77	0.01	2.007	15.47	0.94	11.7	88.1	0.2	-2.34	1.46	0.75	0.85	1.72	197132	10763	82	5246	6	0	0	logfile
✔	6ZPG	11338	2021-11-01	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.004	0.88	0.0	0.05	15.46	0.00	2.162	24.14	0.00	7.9	92.1	0.0	0.46	2.04	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6YAL	10760	2021-11-05	2020-03-12	3.0	3.10	—	3.1	0.022	2.09	46.0	0.12	14.76	0.02	0.805	12.13	2.62	10.0	86.1	3.9	-4.12	0.54	0.64	1.80	3.1	0.009	0.92	2.0	0.04	16.97	0.01	1.910	10.26	3.30	10.1	89.4	0.4	-2.00	2.66	0.62	0.79	1.98	90085	6322	42	1860	6	0	0	logfile
✔	6YAM	10761	2021-11-03	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.12	15.04	0.02	0.634	17.59	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	3.4	0.008	0.99	3.0	0.04	16.84	0.01	1.646	14.72	0.16	10.3	89.3	0.4	-2.03	1.57	0.45	0.64	1.02	118536	9811	51	1862	6	0	0	logfile
✔	6RRS	4989	2021-11-05	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.7	0.003	0.75	0.0	0.00	6.45	0.00	2.234	1.95	0.00	11.4	88.6	0.0	-0.99	1.80	0.81	0.66	—	93060	23220	180	0	0	0	0	logfile
✔	7C79	30296	2021-11-04	2020-05-24	2.5	3.14	—	3.0	0.002	0.59	0.0	0.04	14.01	0.00	1.974	8.76	0.09	5.7	94.2	0.1	-2.99	0.74	0.68	0.77	3.0	0.004	0.72	0.0	0.04	16.39	0.00	2.096	10.23	2.26	6.1	93.9	0.0	-0.37	1.47	0.79	0.78	1.61	27324	2519	14	331	2	0	0	logfile
✔	6UTi	20880	2021-11-06	2019-10-29	3.4	3.66	3.48	3.7	0.007	1.12	0.0	0.06	10.05	0.01	2.232	3.12	0.22	5.1	94.8	0.1	-2.89	0.75	0.82	2.32	3.6	0.003	0.62	0.0	0.04	15.18	0.00	2.194	4.73	0.22	3.6	96.3	0.1	0.39	0.86	0.78	0.88	2.53	46396	6006	28	0	0	0	0	logfile
✔	7BVF	30218	2021-11-02	2020-04-10	2.97	3.41	3.02	3.3	0.007	1.25	6.0	0.15	13.46	0.01	1.409	6.43	0.12	12.7	87.1	0.2	-4.65	0.75	0.88	3.54	3.3	0.009	1.18	1.0	0.04	15.02	0.01	2.186	6.23	1.33	9.4	90.5	0.1	-1.89	0.93	0.75	0.88	2.58	16933	2221	5	0	5	0	0	logfile

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