Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZ9	20528	2022-04-04	2019-07-31	3.65	3.90	—	3.9	0.009	1.21	0.0	0.06	12.29	0.01	2.205	3.43	0.00	6.9	93.1	0.0	-3.88	0.65	0.67	2.19	3.9	0.014	1.32	1.0	0.05	14.26	0.01	2.207	10.28	0.39	4.0	96.0	0.0	-0.70	1.15	0.68	0.71	0.69	7773	1196	3	0	2	0	0	logfile
✔	6HE7	0211	2022-04-07	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.89	0.0	0.05	17.48	0.00	1.904	14.11	0.16	3.1	96.8	0.1	-0.09	0.88	0.63	0.78	1.62	23821	3059	14	0	0	0	0	logfile
✔	6DJP	7939	2022-04-04	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	6GYP	0095	2022-04-06	2018-07-01	3.6	3.70	—	3.7	0.006	0.95	0.0	0.05	10.75	0.01	2.259	4.80	0.50	7.1	92.8	0.1	-4.51	0.57	0.68	2.48	3.7	0.004	0.73	0.0	0.04	15.05	0.00	2.162	11.66	0.40	6.1	93.8	0.0	-0.54	0.79	0.74	0.82	1.49	17811	2148	6	0	0	0	0	logfile
✔	5M64	3449	2022-04-08	2016-10-24	4.6	4.57	—	4.5	0.003	0.69	2.0	0.05	12.90	0.00	1.067	12.98	2.03	4.9	95.0	0.1	-4.55	0.71	0.64	—	4.5	0.005	0.86	0.0	0.05	14.31	0.01	2.035	23.62	0.00	10.1	89.9	0.0	-2.30	1.00	0.76	0.73	—	35876	4383	22	51	6	0	0	logfile
✔	6CES	7464	2022-04-06	2018-02-12	4.0	4.18	—	4.1	0.007	1.32	0.0	0.07	12.09	0.01	2.231	7.25	0.99	16.8	82.8	0.4	-5.29	0.80	0.73	—	4.0	0.012	1.27	0.0	0.05	15.52	0.01	1.845	21.99	0.24	17.3	82.5	0.2	-3.55	0.65	0.81	0.75	—	18988	2348	6	0	1	0	0	logfile
✔	6V0B	20986	2022-04-05	2019-11-18	4.1	4.28	4.05	4.1	0.006	0.98	0.0	0.06	15.05	0.01	2.272	8.86	0.51	7.9	92.1	0.0	-4.96	0.82	0.74	—	4.1	0.004	0.72	0.0	0.05	13.90	0.00	2.035	18.86	0.00	8.5	91.5	0.0	-2.82	0.59	0.82	0.74	—	12485	1530	5	0	0	0	0	logfile
✔	6PDW	20318	2022-04-05	2019-06-19	3.1	3.42	—	3.3	0.005	0.81	1.0	0.05	10.94	0.01	1.792	39.14	0.74	10.7	89.3	0.1	-3.33	0.76	0.79	2.84	3.3	0.003	0.78	0.0	0.04	15.24	0.00	1.928	12.41	0.49	8.6	91.4	0.0	-0.93	1.74	0.76	0.81	2.03	11483	1450	10	0	21	0	0	logfile
✔	5Z3o	6880	2022-04-06	2018-01-08	3.62	3.82	—	3.6	0.003	0.63	0.0	0.04	24.28	0.00	2.055	14.54	0.44	9.3	90.7	0.1	-3.57	0.88	0.81	1.22	3.6	0.004	0.72	0.0	0.04	26.63	0.00	2.018	15.40	0.26	5.5	94.3	0.2	-0.16	2.08	0.89	0.84	0.77	16802	1346	11	292	2	0	0	logfile
✔	6T1Y	10363	2022-04-05	2019-10-07	3.3	3.22	3.26	3.3	0.018	1.62	5.0	0.08	12.34	0.01	1.332	2.81	0.32	5.2	94.8	0.0	-1.04	0.71	0.84	3.29	3.3	0.004	0.71	5.0	0.04	15.95	0.00	1.980	8.28	0.38	2.6	97.4	0.0	0.31	1.77	0.68	0.85	2.71	14915	1885	15	0	15	0	0	logfile
✔	6D05	7785	2022-04-07	2018-04-10	3.8	3.92	—	3.8	0.009	1.13	0.0	0.06	12.61	0.01	2.046	4.42	1.28	4.6	95.4	0.0	-3.29	0.86	0.82	1.80	3.8	0.003	0.64	0.0	0.04	14.64	0.00	1.913	8.95	0.35	4.5	95.5	0.0	0.48	3.11	0.88	0.85	1.72	28748	3572	10	0	26	0	0	logfile
✔	6D04	7784	2022-04-07	2018-04-10	3.74	3.86	—	3.8	0.008	1.07	2.0	0.06	11.62	0.01	2.001	4.28	1.21	4.6	95.4	0.0	-3.02	0.86	0.84	2.26	3.8	0.004	0.63	0.0	0.04	13.89	0.00	1.961	7.85	0.19	4.1	95.9	0.0	0.60	1.98	0.88	0.86	1.82	28748	3572	10	0	26	0	0	logfile
✔	6CET	7465	2022-04-05	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.90	0.0	0.05	13.90	0.01	2.140	17.50	0.06	17.4	82.6	0.0	-3.66	0.80	0.68	0.62	—	14012	1741	3	0	0	0	0	logfile
✔	6QYZ	4680	2022-04-04	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.15	0.0	0.07	28.39	0.01	2.043	76.21	0.00	0.0	0.0	0.0	—	4.53	0.71	0.61	—	7300	0	5	345	0	0	0	logfile
✔	6V5V	21054	2022-04-04	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	7.93	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	5LNK	4093	2022-04-05	2016-08-04	3.9	3.95	—	3.9	0.007	1.05	0.0	1.04	10.81	0.01	2.038	25.39	0.32	12.6	86.9	0.5	-4.85	0.76	0.79	1.96	3.9	0.013	1.93	4.0	0.32	16.79	0.01	1.686	26.78	0.72	11.1	88.5	0.4	-1.76	0.90	0.77	0.79	0.83	63760	7918	61	0	144	0	0	logfile
✔	6DKF	7952	2022-04-06	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.7	0.004	0.76	0.0	0.05	16.54	0.00	2.119	13.99	0.54	2.2	97.8	0.0	-0.05	1.78	0.74	0.79	1.87	17060	2314	14	0	0	0	0	logfile
✔	6VHL	21207	2022-04-04	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.88	0.01	2.268	9.54	0.00	11.3	88.7	0.0	-3.65	2.64	0.28	0.69	3.54	1190	158	4	0	0	0	0	logfile
✔	6PoF	20414	2022-04-08	2019-07-03	4.3	4.41	—	4.3	0.006	0.95	0.0	0.06	14.30	0.01	2.196	6.57	0.39	6.6	93.3	0.1	-4.95	0.76	0.67	—	4.3	0.003	0.72	0.0	0.05	13.70	0.00	2.055	13.59	0.30	6.7	93.3	0.1	-1.78	0.74	0.76	0.68	—	31624	4084	4	0	0	0	0	logfile
✔	6D03	7783	2022-04-07	2018-04-10	3.68	3.89	—	3.8	0.009	1.18	2.0	0.06	12.21	0.01	1.960	4.25	1.12	5.3	94.6	0.1	-3.65	0.85	0.85	3.19	3.8	0.007	0.82	0.0	0.05	14.76	0.00	1.941	7.43	0.07	4.2	95.8	0.0	-0.27	0.60	0.85	0.86	1.83	24844	3106	9	0	26	0	0	logfile

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