Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WDG	21635	2021-08-15	2020-03-31	3.3	3.73	3.80	3.6	0.006	0.96	0.0	0.08	13.53	0.01	1.303	12.64	1.02	12.2	85.8	2.0	-4.96	0.81	0.83	1.41	3.6	0.004	0.70	0.0	0.04	16.01	0.01	2.025	19.77	1.06	10.1	89.7	0.2	-2.50	0.81	0.83	0.84	1.14	148582	6025	57	4733	0	0	0	logfile
✔	6W98	21580	2021-08-08	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.89	0.0	0.05	13.07	0.01	1.990	2.52	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	3.3	0.003	0.64	0.0	0.04	14.53	0.01	1.387	7.13	1.53	3.5	96.5	0.0	0.08	0.53	0.71	0.86	2.50	10317	1389	3	0	4	1	0	logfile
✔	6WDL	21640	2021-08-16	2020-03-31	3.7	4.08	4.12	4.0	0.006	0.97	0.0	0.08	13.25	0.01	1.312	9.12	0.41	10.7	87.5	1.9	-4.85	0.81	0.81	1.06	4.0	0.004	0.70	0.0	0.04	16.34	0.01	2.004	22.34	1.06	10.7	89.2	0.1	-2.43	1.56	0.83	0.82	0.83	150220	6025	60	4810	0	0	0	logfile
✔	6WDF	21634	2021-08-15	2020-03-31	3.3	3.73	3.77	3.6	0.006	0.94	0.0	0.08	13.51	0.01	1.310	11.71	0.94	11.6	86.6	1.8	-4.80	0.81	0.82	1.42	3.6	0.005	0.75	0.0	0.04	16.24	0.01	2.004	20.81	0.96	10.1	89.7	0.2	-2.33	1.54	0.83	0.84	0.92	148582	6025	59	4733	0	0	0	logfile
✔	6WX6	21951	2021-08-10	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.24	0.00	2.012	2.81	0.69	1.2	98.8	0.0	4.76	0.53	0.78	0.89	7.38	68332	4128	56	0	8	2420	32664	logfile
✔	6Y97	10733	2021-08-07	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.73	0.0	0.05	13.38	0.01	2.123	16.16	0.00	7.4	92.6	0.0	0.39	1.70	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6UUN	20883	2021-08-07	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	8.88	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.1	0.004	0.60	0.0	0.04	15.82	0.00	2.122	7.44	2.61	2.7	97.3	0.0	0.46	1.02	0.71	0.86	2.91	8980	1202	7	0	0	0	0	logfile
✔	6S3R	10095	2021-08-08	2019-06-25	3.5	3.63	3.52	3.6	0.006	0.89	0.0	0.05	15.34	0.01	2.035	17.92	2.22	8.4	90.8	0.8	-3.03	0.65	0.79	1.05	3.6	0.011	1.22	0.0	0.04	17.39	0.01	2.080	16.42	0.49	7.4	92.6	0.1	1.10	1.82	0.65	0.79	0.27	12855	1669	11	0	0	0	0	logfile
✔	6WDJ	21638	2021-08-16	2020-03-31	3.7	4.11	4.20	4.0	0.006	0.96	0.0	0.08	13.25	0.01	2.162	8.51	0.41	11.0	87.3	1.7	-4.77	0.81	0.81	1.03	4.0	0.008	0.92	0.0	0.05	17.12	0.01	1.690	36.66	1.65	13.1	86.7	0.2	-2.87	1.57	0.84	0.84	0.55	150211	6024	59	4810	0	0	0	logfile
✔	6VKN	21227	2021-08-09	2020-01-21	3.7	3.81	3.60	3.8	0.018	1.74	3.0	0.09	10.81	0.01	2.274	1.05	0.85	3.6	95.7	0.8	0.87	0.76	0.83	3.33	3.7	0.004	0.68	0.0	0.04	14.81	0.00	2.215	6.57	0.33	4.6	94.9	0.5	0.01	1.68	0.76	0.84	2.42	20220	2394	42	0	102	0	0	logfile
✔	6X19	21993	2021-08-08	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.77	0.0	0.04	16.63	0.00	2.118	6.33	1.74	2.3	97.7	0.0	1.09	1.56	0.72	0.88	4.59	10277	1258	9	0	1	136	0	logfile
✔	6WDA	21629	2021-08-17	2020-03-31	3.8	4.14	4.11	3.9	0.006	0.93	0.0	0.08	13.30	0.01	1.314	10.70	0.69	10.6	87.8	1.6	-4.79	0.84	0.82	0.86	3.9	0.004	0.71	0.0	0.04	16.34	0.01	2.046	23.23	0.96	10.2	89.7	0.1	-2.37	2.06	0.85	0.83	0.44	152933	6373	62	4811	0	0	0	logfile
✔	6WD9	21628	2021-08-17	2020-03-31	3.7	4.05	4.07	3.9	0.006	0.94	0.0	0.08	13.39	0.01	1.313	11.16	0.54	10.7	87.6	1.7	-4.88	0.83	0.82	1.03	3.8	0.007	0.84	0.0	0.04	16.52	0.01	1.971	29.09	1.48	11.7	88.1	0.2	-2.62	0.74	0.85	0.83	0.79	152927	6371	62	4811	0	0	0	logfile
✔	6WDH	21636	2021-08-16	2020-03-31	4.3	3.96	5.24	3.9	0.006	1.00	0.0	0.08	13.22	0.01	2.227	11.29	1.02	12.5	85.3	2.1	-4.94	0.74	0.68	—	3.8	0.004	0.72	0.0	0.04	15.64	0.01	2.016	22.05	0.02	10.6	89.3	0.1	-2.49	1.46	0.82	0.82	—	150149	6024	59	4807	0	0	0	logfile
✔	6So5	10266	2021-08-07	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.32	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.003	0.79	0.0	0.04	14.41	0.01	2.190	14.78	0.00	6.2	93.8	0.0	-0.11	1.49	0.67	0.77	—	8737	1097	7	0	1	0	0	logfile
✔	6Y9A	10734	2021-08-07	2020-03-06	4.2	5.61	—	5.7	0.004	0.82	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.45	—	5.5	0.003	0.76	0.0	0.04	13.42	0.00	2.165	18.78	0.00	5.5	94.5	0.0	-0.51	1.53	0.56	0.68	—	5948	776	4	0	0	0	0	logfile
✔	6WDB	21630	2021-08-16	2020-03-31	4.0	4.30	5.11	4.1	0.006	0.99	0.0	0.08	13.33	0.01	2.211	11.33	0.77	11.9	86.2	1.9	-4.97	0.78	0.72	—	4.1	0.005	0.84	0.0	0.04	17.52	0.01	1.973	34.58	1.14	13.0	86.8	0.2	-3.15	0.96	0.81	0.77	—	150149	6024	59	4807	0	0	0	logfile
✔	6WD8	21627	2021-08-17	2020-03-31	3.7	4.07	4.18	3.9	0.006	0.96	0.0	0.08	13.51	0.01	1.315	12.48	0.80	11.4	86.9	1.7	-4.88	0.83	0.81	1.18	3.9	0.007	0.85	0.0	0.04	17.00	0.01	2.047	32.26	1.40	12.5	87.3	0.1	-2.76	1.55	0.85	0.83	0.86	153212	6409	62	4810	1	0	0	logfile
✔	6WDC	21631	2021-08-16	2020-03-31	4.2	4.07	4.55	3.9	0.006	1.01	0.0	0.08	13.38	0.01	2.262	11.71	1.14	13.3	84.6	2.1	-5.10	0.77	0.73	—	3.9	0.004	0.76	0.0	0.04	16.89	0.01	1.964	28.18	0.04	11.9	88.0	0.1	-3.22	1.63	0.80	0.76	—	150149	6024	59	4807	0	0	0	logfile
✔	6WD1	21620	2021-08-14	2020-03-31	3.3	3.61	3.63	3.4	0.006	0.94	0.0	0.08	13.39	0.01	2.219	11.69	0.55	10.6	87.9	1.5	-5.05	0.82	0.83	1.64	3.4	0.005	0.72	0.0	0.04	15.94	0.01	1.978	20.58	1.14	10.6	89.3	0.1	-2.19	1.55	0.83	0.84	1.29	146942	6023	56	4657	0	0	0	logfile

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