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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PW4 | 20498 | 2023-02-24 | 2019-07-22 | 3.53 | 3.64 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 17.20 | 0.01 | 2.302 | 5.63 | 0.38 | 10.7 | 89.3 | 0.1 | -6.92 | 0.71 | 0.80 | 1.68 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 17.49 | 0.00 | 2.127 | 11.19 | 0.42 | 9.9 | 90.1 | 0.0 | -1.43 | 0.56 | 0.70 | 0.78 | 1.07 | 22348 | 2742 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 6LZ3 | 30022 | 2023-02-21 | 2020-02-18 | 3.2 | 3.37 | 3.26 | 3.3 | 0.007 | 1.20 | 0.0 | 0.06 | 16.42 | 0.01 | 2.201 | 4.66 | 3.86 | 8.7 | 90.9 | 0.4 | -6.45 | 0.80 | 0.81 | 2.16 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.09 | 0.00 | 2.134 | 9.22 | 0.30 | 7.2 | 92.8 | 0.0 | -1.94 | 0.68 | 0.80 | 0.83 | 2.69 | 15968 | 1944 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZA9 | 11127 | 2023-02-20 | 2020-06-05 | 3.76 | 3.97 | — | 3.9 | 0.012 | 1.53 | 0.0 | 0.24 | 15.81 | 0.01 | 2.254 | 5.79 | 0.74 | 4.0 | 96.0 | 0.0 | -3.65 | 0.67 | 0.81 | 2.40 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 16.90 | 0.01 | 2.183 | 12.49 | 0.28 | 3.7 | 96.3 | 0.0 | 0.35 | 1.28 | 0.66 | 0.78 | 1.13 | 11067 | 1375 | 23 | 0 | 9 | 0 | 0 | logfile |
✔ | 7LYT | 23601 | 2023-02-21 | 2021-03-08 | 2.9 | 2.52 | 2.91 | 3.0 | 0.009 | 0.55 | 0.0 | 0.04 | 18.78 | 0.03 | 2.087 | 7.16 | 0.33 | 0.0 | 100.0 | 0.0 | -1.59 | 0.82 | 0.80 | 2.24 | 3.0 | 0.004 | 0.85 | 0.0 | 0.04 | 19.93 | 0.00 | 1.280 | 9.04 | 1.82 | 5.4 | 94.6 | 0.0 | -0.15 | 1.22 | 0.83 | 0.82 | 3.02 | 14354 | 712 | 5 | 92 | 6 | 0 | 6722 | logfile |
✔ | 6L7C | 0842 | 2023-02-23 | 2019-11-01 | 3.34 | 3.45 | — | 3.4 | 0.006 | 0.86 | 0.0 | 0.05 | 14.85 | 0.01 | 2.347 | 3.80 | 1.20 | 4.3 | 95.7 | 0.0 | -3.41 | 0.73 | 0.84 | 2.34 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.78 | 0.00 | 2.208 | 8.94 | 0.22 | 3.4 | 96.6 | 0.0 | 1.03 | 0.57 | 0.76 | 0.86 | 1.84 | 20601 | 2655 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L6o | 23124 | 2023-02-27 | 2020-12-23 | 3.9 | 4.18 | 3.92 | 3.9 | 0.014 | 1.95 | 2.0 | 0.11 | 13.32 | 0.02 | 2.534 | 0.23 | 0.70 | 8.2 | 91.1 | 0.7 | -1.91 | 0.83 | 0.80 | 3.20 | 3.9 | 0.003 | 0.57 | 0.0 | 0.05 | 13.55 | 0.00 | 1.924 | 6.53 | 0.32 | 5.9 | 94.1 | 0.0 | -0.81 | 1.22 | 0.83 | 0.81 | 2.25 | 29270 | 1776 | 51 | 0 | 132 | 0 | 13598 | logfile |
✔ | 7M9A | 23721 | 2023-02-25 | 2021-03-30 | 3.9 | 3.60 | 3.86 | 3.9 | 0.003 | 0.66 | 4.0 | 0.04 | 14.89 | 0.00 | 1.381 | 7.36 | 0.11 | 2.6 | 97.3 | 0.1 | 0.14 | 0.69 | 0.65 | 1.16 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 17.96 | 0.00 | 2.100 | 9.50 | 0.37 | 2.8 | 97.1 | 0.1 | 0.90 | 2.88 | 0.76 | 0.76 | 1.04 | 26139 | 3084 | 24 | 54 | 10 | 0 | 0 | logfile |
✔ | 6o7i | 0642 | 2023-02-23 | 2019-03-07 | 3.2 | 3.32 | — | 3.3 | 0.012 | 1.17 | 0.0 | 0.07 | 12.13 | 0.01 | 2.131 | 7.58 | 1.03 | 8.2 | 91.8 | 0.0 | -4.50 | 0.71 | 0.77 | 3.69 | 3.3 | 0.002 | 0.63 | 0.0 | 0.04 | 15.02 | 0.00 | 2.119 | 9.43 | 0.31 | 4.8 | 95.2 | 0.0 | -0.98 | 1.72 | 0.74 | 0.83 | 2.58 | 20276 | 2377 | 15 | 49 | 97 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2023-02-20 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.87 | 0.00 | 1.129 | 14.37 | 0.00 | 3.0 | 97.0 | 0.0 | -0.34 | 0.99 | 0.71 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 8A5D | 15165 | 2023-02-20 | 2022-06-14 | 2.9 | 3.06 | 2.94 | 3.0 | 0.016 | 1.88 | 1.0 | 0.09 | 13.81 | 0.01 | 2.001 | 0.82 | 0.23 | 2.6 | 97.3 | 0.1 | -0.81 | 0.72 | 0.80 | 4.42 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.70 | 0.00 | 1.930 | 4.78 | 1.99 | 2.9 | 97.1 | 0.0 | 1.45 | 0.63 | 0.80 | 0.85 | 3.53 | 12222 | 1519 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Y00 | 33536 | 2023-02-20 | 2022-06-03 | 3.96 | 4.73 | 3.89 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 27.68 | 0.00 | 1.717 | 12.80 | 0.31 | 1.5 | 98.5 | 0.0 | 0.85 | 0.90 | 0.80 | 0.94 | 3.9 | 0.005 | 0.70 | 0.0 | 0.04 | 29.16 | 0.00 | 2.100 | 14.11 | 0.47 | 2.3 | 97.7 | 0.0 | 1.85 | 2.02 | 0.93 | 0.87 | 1.15 | 12411 | 762 | 10 | 310 | 0 | 0 | 0 | logfile |
✔ | 7NS4 | 12560 | 2023-02-17 | 2021-03-05 | 3.9 | 3.81 | 3.79 | 3.8 | 0.006 | 0.79 | 0.0 | 0.05 | 14.40 | 0.00 | 2.116 | 9.17 | 0.00 | 10.8 | 89.2 | 0.0 | -1.02 | 0.75 | 0.84 | 2.90 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 15.99 | 0.00 | 2.210 | 7.87 | 0.51 | 8.2 | 91.8 | 0.0 | 0.54 | 0.36 | 0.74 | 0.83 | 2.20 | 5465 | 698 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HUJ | 0279 | 2023-02-21 | 2018-10-08 | 3.04 | 3.16 | 3.04 | 3.1 | 0.005 | 0.86 | 0.0 | 0.06 | 8.71 | 0.01 | 2.265 | 4.61 | 0.00 | 4.0 | 96.0 | 0.0 | -4.37 | 0.76 | 0.83 | 4.82 | 3.1 | 0.005 | 0.60 | 0.0 | 0.04 | 13.75 | 0.00 | 2.161 | 7.75 | 0.31 | 3.5 | 96.5 | 0.0 | -0.11 | 0.65 | 0.76 | 0.87 | 4.18 | 15255 | 1812 | 15 | 0 | 35 | 0 | 0 | logfile |
✔ | 6TG9 | 10495 | 2023-02-25 | 2019-11-15 | 3.24 | 3.34 | — | 3.3 | 0.016 | 1.33 | 0.0 | 0.06 | 14.65 | 0.00 | 1.847 | 11.53 | 0.62 | 7.8 | 92.0 | 0.2 | -4.02 | 0.80 | 0.78 | 3.11 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 16.26 | 0.00 | 1.975 | 10.47 | 0.23 | 5.3 | 94.5 | 0.1 | -1.22 | 0.68 | 0.83 | 0.84 | 2.89 | 25412 | 3318 | 14 | 0 | 26 | 0 | 0 | logfile |
✔ | 6ZB5 | 11145 | 2023-02-25 | 2020-06-07 | 2.85 | 2.93 | 2.86 | 2.9 | 0.009 | 0.76 | 1.0 | 0.06 | 17.24 | 0.01 | 1.985 | 2.81 | 3.76 | 7.6 | 92.4 | 0.0 | -3.22 | 0.77 | 0.85 | 3.59 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 17.55 | 0.00 | 2.232 | 2.32 | 3.49 | 5.0 | 95.0 | 0.0 | -0.95 | 1.13 | 0.77 | 0.86 | 3.40 | 24499 | 3096 | 9 | 0 | 29 | 0 | 0 | logfile |
✔ | 7XD0 | 33131 | 2023-02-23 | 2022-03-26 | 3.48 | 2.98 | — | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 27.21 | 0.00 | 2.062 | 11.16 | 0.26 | 3.0 | 97.0 | 0.0 | 1.30 | 0.82 | 0.81 | 1.79 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 28.06 | 0.00 | 2.167 | 10.17 | 0.13 | 4.2 | 95.8 | 0.0 | 1.75 | 0.36 | 0.83 | 0.83 | 1.58 | 13222 | 915 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-02-21 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.5 | 0.006 | 1.23 | 0.0 | 0.06 | 14.56 | 0.01 | 1.854 | 41.71 | 0.00 | 6.7 | 93.3 | 0.0 | -3.29 | 3.82 | 0.26 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BoA | 7122 | 2023-02-23 | 2017-11-18 | 4.2 | 4.31 | — | 4.3 | 0.007 | 1.29 | 0.0 | 0.06 | 11.91 | 0.01 | 2.296 | 4.73 | 1.74 | 10.5 | 89.5 | 0.0 | -5.87 | 0.73 | 0.81 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.05 | 13.51 | 0.00 | 2.139 | 12.64 | 0.19 | 10.2 | 89.8 | 0.0 | -0.72 | 1.90 | 0.74 | 0.82 | — | 19040 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3J | 7039 | 2023-02-18 | 2017-09-22 | 3.3 | 3.63 | 3.26 | 3.5 | 0.007 | 1.00 | 0.0 | 0.06 | 9.89 | 0.01 | 2.229 | 4.31 | 0.00 | 4.2 | 95.8 | 0.0 | 0.60 | 0.66 | 0.73 | 2.35 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 14.91 | 0.00 | 2.186 | 12.43 | 0.31 | 4.3 | 95.7 | 0.0 | 0.92 | 1.71 | 0.70 | 0.78 | 1.51 | 9034 | 1129 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BoB | 7123 | 2023-02-23 | 2017-11-18 | 3.9 | 3.98 | — | 3.9 | 0.007 | 1.20 | 0.0 | 0.06 | 11.84 | 0.01 | 2.259 | 7.24 | 0.76 | 11.1 | 88.5 | 0.3 | -4.96 | 0.58 | 0.65 | 1.68 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 16.41 | 0.00 | 2.099 | 13.75 | 0.76 | 8.4 | 91.6 | 0.0 | -1.37 | 0.99 | 0.73 | 0.80 | 1.63 | 19340 | 2412 | 4 | 0 | 0 | 0 | 0 | logfile |