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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7E8i | 31020 | 2023-08-14 | 2021-03-01 | 3.1 | 3.57 | — | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 24.79 | 0.00 | 2.216 | 7.94 | 0.00 | 3.3 | 96.7 | 0.0 | -2.84 | 0.74 | 0.78 | 2.22 | 3.5 | 0.005 | 0.63 | 0.0 | 0.04 | 26.84 | 0.00 | 2.099 | 9.11 | 0.60 | 3.6 | 96.4 | 0.0 | 0.62 | 0.54 | 0.75 | 0.80 | 2.12 | 15271 | 1176 | 12 | 290 | 0 | 0 | 0 | logfile |
✔ | 7TYo | 26190 | 2023-08-11 | 2022-02-14 | 2.7 | 2.09 | 2.60 | 2.4 | 0.002 | 0.47 | 0.0 | 0.04 | 12.83 | 0.00 | 2.176 | 5.50 | 1.37 | 2.0 | 98.0 | 0.0 | -3.13 | 0.54 | 0.74 | 3.81 | 2.7 | 0.004 | 0.66 | 0.0 | 0.04 | 16.35 | 0.00 | 2.094 | 8.42 | 2.11 | 2.6 | 97.4 | 0.0 | 0.54 | 1.06 | 0.55 | 0.76 | 3.39 | 9052 | 1141 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7Xi9 | 33200 | 2023-08-10 | 2022-04-12 | 2.52 | 2.70 | 2.54 | 2.7 | 0.009 | 0.69 | 0.0 | 0.16 | 18.91 | 0.01 | 2.221 | 7.09 | 4.72 | 4.0 | 96.0 | 0.0 | -2.68 | 0.66 | 0.84 | 4.79 | 2.7 | 0.003 | 0.71 | 0.0 | 0.06 | 19.23 | 0.00 | 2.203 | 6.81 | 2.70 | 2.9 | 97.1 | 0.0 | -0.20 | 1.23 | 0.67 | 0.85 | 4.64 | 7620 | 870 | 6 | 24 | 4 | 232 | 0 | logfile |
✔ | 7CMH | 30406 | 2023-08-10 | 2020-07-27 | 3.4 | 3.57 | — | 3.6 | 0.006 | 1.06 | 0.0 | 0.06 | 15.20 | 0.01 | 2.214 | 9.49 | 1.18 | 8.6 | 90.7 | 0.8 | -5.98 | 0.63 | 0.81 | 2.75 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 16.20 | 0.00 | 2.163 | 8.01 | 1.18 | 6.7 | 93.2 | 0.1 | -0.85 | 0.60 | 0.64 | 0.82 | 1.78 | 7368 | 928 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T2R | 25633 | 2023-08-20 | 2021-12-06 | 3.2 | 2.31 | — | 2.1 | 0.010 | 1.52 | 6.0 | 0.12 | 15.94 | 0.01 | 1.915 | 10.04 | 5.23 | 10.3 | 89.7 | 0.0 | -4.57 | 0.76 | 0.76 | 2.17 | 2.1 | 0.004 | 0.82 | 0.0 | 0.05 | 17.23 | 0.01 | 2.062 | 18.35 | 1.05 | 9.8 | 90.2 | 0.0 | -2.07 | 0.55 | 0.77 | 0.79 | 1.81 | 29216 | 3736 | 20 | 0 | 22 | 0 | 0 | logfile |
✔ | 7WVV | 32859 | 2023-08-10 | 2022-02-11 | 2.9 | 3.01 | — | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 12.21 | 0.00 | 2.286 | 7.42 | 0.00 | 2.2 | 97.8 | 0.0 | 0.74 | 0.59 | 0.74 | 2.55 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 15.35 | 0.00 | 2.136 | 9.20 | 1.89 | 2.9 | 97.1 | 0.0 | 0.43 | 0.45 | 0.62 | 0.79 | 2.80 | 7020 | 911 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W0A | 32236 | 2023-08-19 | 2021-11-18 | 3.12 | 3.32 | — | 3.3 | 0.004 | 0.53 | 0.0 | 0.04 | 13.55 | 0.00 | 2.186 | 7.03 | 0.00 | 3.0 | 97.0 | 0.0 | 0.62 | 0.74 | 0.81 | 2.98 | 3.3 | 0.003 | 0.49 | 0.0 | 0.04 | 14.82 | 0.00 | 2.189 | 6.23 | 0.19 | 2.7 | 97.3 | 0.0 | 0.95 | 0.47 | 0.78 | 0.86 | 2.40 | 26898 | 2988 | 8 | 126 | 0 | 0 | 0 | logfile |
✔ | 7SSS | 25413 | 2023-08-14 | 2021-11-11 | 2.4 | 2.00 | 2.36 | 2.4 | 0.006 | 0.66 | 0.0 | 0.04 | 14.29 | 0.02 | 2.323 | 3.55 | 0.00 | 2.4 | 97.6 | 0.0 | 0.01 | 0.59 | 0.78 | 4.08 | 2.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.86 | 0.00 | 2.126 | 10.16 | 2.41 | 3.9 | 96.1 | 0.0 | 2.31 | 0.59 | 0.60 | 0.78 | 3.63 | 12190 | 1416 | 24 | 0 | 38 | 170 | 0 | logfile |
✔ | 7Lo7 | 23463 | 2023-08-09 | 2021-02-09 | 3.74 | 4.00 | — | 4.0 | 0.008 | 1.12 | 0.0 | 0.06 | 16.50 | 0.01 | 2.123 | 11.72 | 0.59 | 11.7 | 88.2 | 0.1 | -2.56 | 0.65 | 0.78 | 1.34 | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 17.51 | 0.01 | 2.129 | 12.00 | 1.03 | 8.7 | 91.3 | 0.0 | -1.01 | 0.43 | 0.64 | 0.77 | 1.26 | 6149 | 805 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E3i | 27866 | 2023-08-13 | 2022-08-17 | 2.53 | 2.76 | 2.58 | 2.8 | 0.004 | 0.62 | 0.0 | 0.04 | 13.29 | 0.00 | 2.215 | 8.98 | 0.07 | 5.3 | 94.6 | 0.1 | -0.36 | 0.73 | 0.88 | 4.95 | 2.8 | 0.003 | 0.63 | 0.0 | 0.04 | 15.81 | 0.00 | 2.183 | 8.53 | 0.82 | 5.6 | 94.3 | 0.1 | -0.47 | 1.70 | 0.75 | 0.90 | 4.69 | 13431 | 1671 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 7UL6 | 26593 | 2023-08-16 | 2022-04-04 | 3.73 | 4.04 | 3.71 | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 14.37 | 0.01 | 2.006 | 5.35 | 0.15 | 2.2 | 97.8 | 0.0 | 1.33 | 0.54 | 0.78 | 2.29 | 4.1 | 0.003 | 0.55 | 0.0 | 0.04 | 15.28 | 0.00 | 1.978 | 7.31 | 0.15 | 2.3 | 97.7 | 0.0 | 1.62 | 0.91 | 0.55 | 0.79 | 1.48 | 13268 | 878 | 2 | 0 | 0 | 0 | 6614 | logfile |
✔ | 8EW0 | 28639 | 2023-08-13 | 2022-10-21 | 2.7 | 2.71 | 2.65 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 18.44 | 0.00 | 2.224 | 7.02 | 2.82 | 1.9 | 98.0 | 0.1 | 1.98 | 0.68 | 0.90 | 3.71 | 2.7 | 0.004 | 0.57 | 0.0 | 0.04 | 18.47 | 0.00 | 2.205 | 7.21 | 4.48 | 2.0 | 97.9 | 0.1 | 2.31 | 0.87 | 0.70 | 0.91 | 3.99 | 13636 | 1747 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DN8 | 27556 | 2023-08-12 | 2022-07-10 | 3.7 | 4.03 | 3.79 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.76 | 0.00 | 2.157 | 9.82 | 0.00 | 6.0 | 94.0 | 0.0 | -0.14 | 0.72 | 0.82 | 1.16 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 16.11 | 0.00 | 2.185 | 11.45 | 0.60 | 5.6 | 94.4 | 0.0 | -0.15 | 0.57 | 0.72 | 0.81 | 1.19 | 10638 | 1300 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TTH | 26115 | 2023-08-12 | 2022-02-01 | 3.25 | 3.81 | — | 3.7 | 0.004 | 0.70 | 0.0 | 0.05 | 11.66 | 0.00 | 2.232 | 7.80 | 0.00 | 4.5 | 95.5 | 0.0 | -0.01 | 0.55 | 0.71 | 1.99 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.09 | 0.00 | 2.132 | 6.36 | 0.33 | 4.4 | 95.6 | 0.0 | 0.70 | 0.54 | 0.65 | 0.79 | 1.73 | 12698 | 1750 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7WSP | 32763 | 2023-08-10 | 2022-01-30 | 4.09 | 4.37 | — | 4.2 | 0.008 | 1.11 | 0.0 | 0.06 | 10.99 | 0.01 | 2.212 | 8.21 | 0.68 | 13.2 | 86.6 | 0.2 | -4.84 | 0.72 | 0.80 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 11.54 | 0.00 | 2.127 | 10.58 | 0.00 | 10.0 | 90.0 | 0.0 | -2.17 | 1.37 | 0.71 | 0.78 | — | 7883 | 1009 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q4C | 13801 | 2023-08-11 | 2021-10-30 | 4.08 | 4.49 | 4.12 | 4.4 | 0.007 | 0.92 | 0.0 | 0.05 | 13.82 | 0.01 | 2.077 | 6.86 | 0.00 | 3.3 | 96.7 | 0.0 | -1.44 | 0.71 | 0.75 | — | 4.4 | 0.003 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.022 | 8.73 | 0.00 | 2.6 | 97.4 | 0.0 | 1.68 | 0.92 | 0.69 | 0.74 | — | 9503 | 585 | 5 | 0 | 11 | 0 | 4598 | logfile |
✔ | 3JBR | 6475 | 2023-08-14 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 8.32 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.04 | 10.88 | 0.00 | 2.100 | 16.99 | 0.00 | 12.1 | 85.7 | 2.2 | -0.93 | 1.54 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 7Voo | 32052 | 2023-08-15 | 2021-10-14 | 3.9 | 4.07 | — | 3.9 | 0.004 | 0.91 | 1.0 | 0.05 | 12.62 | 0.01 | 1.930 | 21.49 | 0.29 | 12.7 | 86.9 | 0.4 | -2.96 | 0.61 | 0.69 | 1.12 | 3.9 | 0.003 | 0.80 | 0.0 | 0.05 | 15.24 | 0.01 | 2.170 | 21.49 | 0.67 | 11.1 | 88.6 | 0.3 | -2.61 | 0.55 | 0.62 | 0.71 | 0.94 | 9686 | 1245 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PZK | 20536 | 2023-08-13 | 2019-08-01 | 3.2 | 3.65 | — | 3.6 | 0.012 | 1.93 | 16.0 | 0.12 | 14.42 | 0.02 | 2.533 | 0.30 | 1.95 | 3.8 | 96.2 | 0.0 | -2.86 | 0.65 | 0.75 | 2.57 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 16.20 | 0.00 | 2.151 | 9.82 | 0.34 | 2.2 | 97.8 | 0.0 | 1.46 | 1.70 | 0.73 | 0.82 | 1.75 | 13153 | 1624 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RAU | 24386 | 2023-08-16 | 2021-07-02 | 3.99 | 4.71 | — | 4.5 | 0.009 | 1.26 | 0.0 | 0.05 | 12.56 | 0.01 | 2.299 | 4.39 | 1.11 | 6.3 | 93.5 | 0.2 | -4.28 | 0.63 | 0.79 | 0.68 | 4.6 | 0.003 | 0.89 | 0.0 | 0.04 | 15.52 | 0.00 | 2.111 | 15.57 | 0.51 | 5.9 | 94.1 | 0.0 | -0.05 | 1.84 | 0.63 | 0.79 | 0.55 | 20000 | 2440 | 8 | 0 | 8 | 0 | 0 | logfile |