Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E8i	31020	2023-08-14	2021-03-01	3.1	3.57	—	3.5	0.005	0.74	0.0	0.05	24.79	0.00	2.216	7.94	0.00	3.3	96.7	0.0	-2.84	0.74	0.78	2.22	3.5	0.005	0.63	0.0	0.04	26.84	0.00	2.099	9.11	0.60	3.6	96.4	0.0	0.62	0.54	0.75	0.80	2.12	15271	1176	12	290	0	0	0	logfile
✔	7TYo	26190	2023-08-11	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.83	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.004	0.66	0.0	0.04	16.35	0.00	2.094	8.42	2.11	2.6	97.4	0.0	0.54	1.06	0.55	0.76	3.39	9052	1141	6	0	4	0	0	logfile
✔	7Xi9	33200	2023-08-10	2022-04-12	2.52	2.70	2.54	2.7	0.009	0.69	0.0	0.16	18.91	0.01	2.221	7.09	4.72	4.0	96.0	0.0	-2.68	0.66	0.84	4.79	2.7	0.003	0.71	0.0	0.06	19.23	0.00	2.203	6.81	2.70	2.9	97.1	0.0	-0.20	1.23	0.67	0.85	4.64	7620	870	6	24	4	232	0	logfile
✔	7CMH	30406	2023-08-10	2020-07-27	3.4	3.57	—	3.6	0.006	1.06	0.0	0.06	15.20	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.81	2.75	3.5	0.003	0.70	0.0	0.04	16.20	0.00	2.163	8.01	1.18	6.7	93.2	0.1	-0.85	0.60	0.64	0.82	1.78	7368	928	7	0	10	0	0	logfile
✔	7T2R	25633	2023-08-20	2021-12-06	3.2	2.31	—	2.1	0.010	1.52	6.0	0.12	15.94	0.01	1.915	10.04	5.23	10.3	89.7	0.0	-4.57	0.76	0.76	2.17	2.1	0.004	0.82	0.0	0.05	17.23	0.01	2.062	18.35	1.05	9.8	90.2	0.0	-2.07	0.55	0.77	0.79	1.81	29216	3736	20	0	22	0	0	logfile
✔	7WVV	32859	2023-08-10	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.55	0.0	0.04	15.35	0.00	2.136	9.20	1.89	2.9	97.1	0.0	0.43	0.45	0.62	0.79	2.80	7020	911	5	0	0	0	0	logfile
✔	7W0A	32236	2023-08-19	2021-11-18	3.12	3.32	—	3.3	0.004	0.53	0.0	0.04	13.55	0.00	2.186	7.03	0.00	3.0	97.0	0.0	0.62	0.74	0.81	2.98	3.3	0.003	0.49	0.0	0.04	14.82	0.00	2.189	6.23	0.19	2.7	97.3	0.0	0.95	0.47	0.78	0.86	2.40	26898	2988	8	126	0	0	0	logfile
✔	7SSS	25413	2023-08-14	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.55	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.3	0.003	0.61	0.0	0.04	17.86	0.00	2.126	10.16	2.41	3.9	96.1	0.0	2.31	0.59	0.60	0.78	3.63	12190	1416	24	0	38	170	0	logfile
✔	7Lo7	23463	2023-08-09	2021-02-09	3.74	4.00	—	4.0	0.008	1.12	0.0	0.06	16.50	0.01	2.123	11.72	0.59	11.7	88.2	0.1	-2.56	0.65	0.78	1.34	4.0	0.003	0.77	0.0	0.04	17.51	0.01	2.129	12.00	1.03	8.7	91.3	0.0	-1.01	0.43	0.64	0.77	1.26	6149	805	3	0	0	0	0	logfile
✔	8E3i	27866	2023-08-13	2022-08-17	2.53	2.76	2.58	2.8	0.004	0.62	0.0	0.04	13.29	0.00	2.215	8.98	0.07	5.3	94.6	0.1	-0.36	0.73	0.88	4.95	2.8	0.003	0.63	0.0	0.04	15.81	0.00	2.183	8.53	0.82	5.6	94.3	0.1	-0.47	1.70	0.75	0.90	4.69	13431	1671	5	7	3	0	0	logfile
✔	7UL6	26593	2023-08-16	2022-04-04	3.73	4.04	3.71	4.1	0.003	0.60	0.0	0.04	14.37	0.01	2.006	5.35	0.15	2.2	97.8	0.0	1.33	0.54	0.78	2.29	4.1	0.003	0.55	0.0	0.04	15.28	0.00	1.978	7.31	0.15	2.3	97.7	0.0	1.62	0.91	0.55	0.79	1.48	13268	878	2	0	0	0	6614	logfile
✔	8EW0	28639	2023-08-13	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.004	0.57	0.0	0.04	18.47	0.00	2.205	7.21	4.48	2.0	97.9	0.1	2.31	0.87	0.70	0.91	3.99	13636	1747	6	0	0	0	0	logfile
✔	8DN8	27556	2023-08-12	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.66	0.0	0.04	16.11	0.00	2.185	11.45	0.60	5.6	94.4	0.0	-0.15	0.57	0.72	0.81	1.19	10638	1300	6	0	2	0	0	logfile
✔	7TTH	26115	2023-08-12	2022-02-01	3.25	3.81	—	3.7	0.004	0.70	0.0	0.05	11.66	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.63	0.0	0.04	14.09	0.00	2.132	6.36	0.33	4.4	95.6	0.0	0.70	0.54	0.65	0.79	1.73	12698	1750	8	0	10	0	0	logfile
✔	7WSP	32763	2023-08-10	2022-01-30	4.09	4.37	—	4.2	0.008	1.11	0.0	0.06	10.99	0.01	2.212	8.21	0.68	13.2	86.6	0.2	-4.84	0.72	0.80	—	4.2	0.003	0.71	0.0	0.04	11.54	0.00	2.127	10.58	0.00	10.0	90.0	0.0	-2.17	1.37	0.71	0.78	—	7883	1009	4	0	0	0	0	logfile
✔	7Q4C	13801	2023-08-11	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.92	0.0	0.05	13.82	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.003	0.61	0.0	0.04	14.94	0.00	2.022	8.73	0.00	2.6	97.4	0.0	1.68	0.92	0.69	0.74	—	9503	585	5	0	11	0	4598	logfile
✔	3JBR	6475	2023-08-14	2015-09-29	4.2	4.39	—	4.2	0.009	1.31	0.0	0.06	8.32	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.004	0.80	0.0	0.04	10.88	0.00	2.100	16.99	0.00	12.1	85.7	2.2	-0.93	1.54	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	7Voo	32052	2023-08-15	2021-10-14	3.9	4.07	—	3.9	0.004	0.91	1.0	0.05	12.62	0.01	1.930	21.49	0.29	12.7	86.9	0.4	-2.96	0.61	0.69	1.12	3.9	0.003	0.80	0.0	0.05	15.24	0.01	2.170	21.49	0.67	11.1	88.6	0.3	-2.61	0.55	0.62	0.71	0.94	9686	1245	6	0	12	0	0	logfile
✔	6PZK	20536	2023-08-13	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.30	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.20	0.00	2.151	9.82	0.34	2.2	97.8	0.0	1.46	1.70	0.73	0.82	1.75	13153	1624	5	0	0	0	0	logfile
✔	7RAU	24386	2023-08-16	2021-07-02	3.99	4.71	—	4.5	0.009	1.26	0.0	0.05	12.56	0.01	2.299	4.39	1.11	6.3	93.5	0.2	-4.28	0.63	0.79	0.68	4.6	0.003	0.89	0.0	0.04	15.52	0.00	2.111	15.57	0.51	5.9	94.1	0.0	-0.05	1.84	0.63	0.79	0.55	20000	2440	8	0	8	0	0	logfile

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