Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WB2	21585	2021-12-01	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.72	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.56	0.0	0.04	12.04	0.00	2.149	10.01	0.17	3.6	96.4	0.0	-0.22	0.62	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6WAZ	21582	2021-12-01	2020-03-26	4.1	4.33	—	4.2	0.004	0.79	0.0	0.06	14.85	0.01	1.931	9.98	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.62	0.0	0.04	14.41	0.00	2.121	8.57	0.00	5.2	94.8	0.0	-1.12	0.76	0.83	0.83	—	8537	955	4	54	0	0	0	logfile
✔	6Z3T	11064	2021-12-01	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.12	0.0	0.04	19.79	0.00	2.256	13.72	2.14	7.7	92.3	0.0	-1.72	0.92	0.21	0.66	1.55	3608	441	4	0	21	0	0	logfile
✔	6V4D	21040	2021-12-01	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.80	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.88	0.0	0.05	16.75	0.01	2.085	13.54	1.01	6.2	93.8	0.0	-0.80	0.63	0.46	0.78	1.50	3095	422	1	0	0	0	0	logfile
✔	6Y90	10731	2021-12-01	2020-03-06	3.69	4.05	—	4.0	0.007	0.90	0.0	0.07	14.16	0.00	2.268	7.74	0.19	2.8	97.2	0.0	0.18	0.59	0.76	1.32	4.0	0.004	0.66	0.0	0.04	15.79	0.01	2.192	11.08	0.29	4.7	95.3	0.0	-0.15	0.98	0.60	0.80	1.58	9778	1218	8	0	20	0	0	logfile
✔	6LMK	0917	2021-12-01	2019-12-26	3.7	3.89	—	3.8	0.009	0.96	0.0	0.06	15.10	0.01	2.283	7.02	0.62	6.5	93.5	0.0	-4.19	0.68	0.82	1.70	3.8	0.007	0.82	0.0	0.04	16.26	0.01	2.093	15.36	0.62	4.9	95.1	0.0	-0.95	0.65	0.69	0.81	1.32	9240	1178	6	0	0	0	0	logfile
✔	6XDC	22136	2021-12-01	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.63	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.004	0.62	0.0	0.04	15.16	0.00	2.185	9.25	2.87	4.2	95.8	0.0	0.90	1.70	0.45	0.70	3.35	3150	386	2	0	0	0	0	logfile
✔	6WBY	21601	2021-12-01	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.23	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.64	0.0	0.04	13.46	0.01	2.237	5.64	0.22	3.9	96.1	0.0	-0.35	0.37	0.77	0.87	2.48	9156	1250	1	0	2	0	0	logfile
✔	6XE6	22144	2021-12-01	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.92	0.01	1.098	10.06	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.79	0.0	0.04	13.92	0.00	2.139	14.78	0.00	10.1	89.4	0.5	-2.19	1.18	0.54	0.76	—	6530	826	1	0	6	0	0	logfile
✔	6VQT	21356	2021-12-01	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.003	0.72	0.0	0.04	16.44	0.00	0.999	9.66	0.43	2.9	97.1	0.0	2.46	1.06	0.77	0.84	1.36	9144	1168	4	0	6	0	0	logfile
✔	6YSL	10899	2021-12-01	2020-04-22	3.5	3.58	3.41	3.5	0.006	1.17	0.0	0.06	12.21	0.01	2.232	5.93	0.47	9.0	90.9	0.1	-4.73	0.58	0.72	1.19	3.5	0.005	0.97	0.0	0.05	16.67	0.01	2.067	16.69	0.47	7.3	92.7	0.0	-1.12	1.18	0.60	0.71	0.96	10128	1324	7	0	0	0	0	logfile
✔	6LML	0918	2021-12-01	2019-12-26	3.9	4.02	—	3.9	0.006	0.96	0.0	0.06	15.40	0.01	2.260	7.12	0.51	8.8	91.2	0.0	-5.53	0.69	0.80	1.70	3.9	0.003	0.71	0.0	0.04	16.49	0.00	2.166	12.25	0.51	6.6	93.4	0.0	-1.88	1.34	0.68	0.79	0.83	9438	1219	6	0	0	0	0	logfile
✔	6YSF	10895	2021-12-02	2020-04-22	3.4	3.49	3.31	3.5	0.004	0.77	0.0	0.04	15.31	0.00	1.874	13.85	0.90	8.5	91.5	0.0	-3.39	0.67	0.80	2.12	3.5	0.007	1.04	0.0	0.04	17.42	0.01	1.739	19.52	0.54	8.1	91.9	0.0	-0.25	0.67	0.67	0.80	1.60	10220	1327	7	0	0	0	0	logfile
✔	6V3H	21037	2021-12-01	2019-11-25	3.5	3.58	—	3.6	0.009	1.24	1.0	0.07	12.24	0.01	2.275	3.03	0.76	2.9	97.0	0.1	0.65	0.66	0.84	2.86	3.5	0.003	0.67	0.0	0.04	14.44	0.00	2.145	4.59	0.28	3.8	96.2	0.0	1.31	1.16	0.66	0.84	1.87	9926	1232	8	0	21	0	0	logfile
✔	6WB0	21583	2021-12-01	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.83	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.003	0.60	0.0	0.04	12.45	0.00	2.138	10.03	0.00	4.7	95.3	0.0	-1.45	1.28	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	6WYK	21967	2021-12-01	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.62	0.77	—	3083	415	1	0	0	0	0	logfile
✔	6WB1	21584	2021-12-01	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.003	0.61	0.0	0.04	13.12	0.00	2.159	10.71	0.00	4.3	95.7	0.0	-0.90	0.73	0.88	0.84	—	8235	944	4	75	0	0	0	logfile
✔	6WCZ	21618	2021-12-01	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.60	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.004	0.82	0.0	0.04	15.06	0.01	1.942	18.61	1.04	7.9	92.1	0.0	-1.58	2.05	0.83	0.78	—	9894	1231	2	0	2	0	0	logfile
✔	6VZ1	21481	2021-12-01	2020-02-27	3.2	3.35	—	3.4	0.014	1.24	0.0	0.06	19.73	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.002	0.61	0.0	0.04	17.87	0.00	2.201	8.23	0.70	5.5	94.5	0.0	-0.34	1.29	0.56	0.84	2.64	7112	822	4	0	6	0	0	logfile
✔	6YW7	10960	2021-12-01	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.84	0.64	—	5426	1788	9	0	2	0	0	logfile

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