Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XLC	22239	2021-12-01	2020-06-28	3.66	3.01	—	3.7	0.001	0.38	0.0	0.04	12.67	0.00	2.079	6.07	0.00	1.6	98.4	0.0	-2.69	0.66	0.64	1.16	3.6	0.006	0.69	0.0	0.04	16.03	0.01	1.915	12.29	0.09	2.8	97.2	0.0	-0.56	0.93	0.72	0.75	1.89	9858	1212	4	0	4	0	0	logfile
✔	7F3U	31441	2021-12-01	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	22.41	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.003	0.87	0.0	0.04	15.41	0.00	2.184	16.57	1.74	5.5	94.5	0.0	3.50	1.02	0.59	0.77	—	4274	656	2	0	0	0	0	logfile
✔	7B03	11955	2021-12-01	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.62	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.002	0.47	0.0	0.04	16.37	0.00	2.129	8.54	2.03	1.1	98.9	0.0	2.05	0.41	0.70	0.83	1.42	8670	1085	10	0	5	0	0	logfile
✔	6XoS	22278	2021-12-01	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	2.95	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.77	0.0	0.04	14.56	0.00	2.167	10.21	0.23	2.4	97.6	0.0	1.53	0.97	0.89	0.85	1.76	7704	966	1	0	0	0	0	logfile
✔	7MHZ	23837	2021-12-01	2021-04-16	3.2	3.82	—	3.7	0.070	2.83	0.0	0.18	20.05	0.00	2.210	8.27	0.00	3.4	96.6	0.0	1.45	0.61	0.79	2.94	3.7	0.004	1.03	0.0	0.04	21.99	0.00	2.116	37.58	0.17	3.6	96.4	0.0	1.49	0.20	0.60	0.79	2.92	6189	723	6	0	15	0	0	logfile
✔	7M8J	23717	2021-12-01	2021-03-29	3.48	3.83	3.41	3.7	0.006	0.96	0.0	0.05	14.72	0.00	1.837	12.17	0.00	6.8	93.2	0.0	-0.32	0.69	0.80	2.61	3.7	0.004	0.65	0.0	0.04	15.39	0.00	2.088	8.26	0.26	8.1	91.9	0.0	-0.58	0.49	0.70	0.82	2.81	6915	453	3	0	0	0	3398	logfile
✔	7Mo8	23920	2021-12-01	2021-05-01	4.5	3.94	—	3.6	0.008	1.00	0.0	0.05	16.54	0.01	2.070	31.15	0.00	9.8	90.2	0.0	-1.95	0.82	0.75	—	3.6	0.003	0.66	0.0	0.04	14.37	0.00	2.146	21.29	0.00	7.2	92.8	0.0	-1.48	2.29	0.83	0.75	—	9877	1250	3	0	6	0	0	logfile
✔	7MSX	23971	2021-12-01	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.29	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✘	7E0K	30935	2021-12-01	2021-01-28	3.09	2.58	—	3.1	0.010	1.45	0.0	0.05	18.57	0.02	1.210	8.40	0.00	7.2	92.8	0.0	-3.05	0.62	0.82	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8044	677	6	0	58	0	0	logfile
✔	7MBY	23750	2021-12-01	2021-04-01	2.44	3.24	2.49	3.1	0.006	0.93	1.0	0.06	12.36	0.01	2.280	4.92	0.00	1.7	98.3	0.0	-1.45	0.58	0.68	2.19	3.1	0.003	0.80	0.0	0.04	15.83	0.00	2.113	17.31	2.50	2.8	97.2	0.0	0.05	1.04	0.58	0.70	1.76	6881	891	6	0	2	0	0	logfile
✔	7DDo	30655	2021-12-01	2020-10-29	3.4	3.24	—	3.2	0.002	0.53	0.0	0.04	14.10	0.00	2.062	7.30	0.00	2.5	97.5	0.0	-1.39	0.73	0.79	2.11	3.2	0.003	0.60	0.0	0.04	15.87	0.00	2.026	10.39	0.43	2.7	97.3	0.0	1.01	0.35	0.74	0.81	2.23	6468	791	4	0	5	0	0	logfile
✔	7MJS	23883	2021-12-01	2021-04-20	3.03	3.31	3.09	3.2	0.005	0.94	1.0	0.06	14.20	0.01	2.228	8.63	0.00	4.7	95.3	0.0	-3.02	0.63	0.83	3.58	3.2	0.019	1.58	1.0	0.05	15.96	0.00	2.212	10.54	0.34	3.9	96.1	0.0	-0.07	0.37	0.65	0.85	2.97	5536	703	3	0	3	0	0	logfile
✔	7M7B	23709	2021-12-01	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.09	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.2	0.003	0.67	0.0	0.04	14.27	0.01	2.186	5.82	0.37	3.0	97.0	0.0	0.03	1.34	0.64	0.89	3.53	4898	635	4	0	2	0	0	logfile
✔	7MSW	23970	2021-12-01	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.81	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.004	0.60	0.0	0.04	14.05	0.01	2.053	6.58	0.00	4.6	95.4	0.0	-0.05	0.98	0.79	0.81	1.51	9881	635	1	0	3	0	4959	logfile
✔	7NPT	12520	2021-12-01	2021-02-28	3.27	3.21	3.16	3.2	0.007	1.19	0.0	0.05	14.11	0.01	2.338	2.91	0.00	1.8	98.2	0.0	-1.66	0.55	0.72	3.44	3.2	0.003	0.58	0.0	0.04	15.84	0.00	1.994	6.16	0.00	3.1	96.9	0.0	0.69	1.53	0.57	0.76	1.97	8609	552	3	0	0	0	4288	logfile
✔	7E8F	31017	2021-12-01	2021-03-01	3.18	2.62	2.95	2.6	0.005	0.68	0.0	0.05	13.86	0.01	2.157	8.95	0.00	7.6	92.4	0.0	-1.64	0.68	0.81	4.24	2.6	0.006	0.78	0.0	0.05	15.28	0.00	2.140	9.24	0.63	7.3	92.7	0.0	-1.05	1.10	0.68	0.82	3.87	8768	1134	8	0	0	0	0	logfile
✔	7NVV	12614	2021-12-01	2021-03-16	2.9	3.23	2.79	3.1	0.003	0.52	0.0	0.04	17.40	0.00	1.984	3.96	0.00	2.7	97.3	0.0	1.30	0.74	0.80	3.40	3.1	0.004	0.67	0.0	0.04	20.28	0.00	1.917	10.53	2.89	3.1	96.9	0.0	-0.09	0.66	0.74	0.83	3.10	9071	975	9	50	27	0	0	logfile
✔	7NPS	12518	2021-12-01	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.003	0.58	0.0	0.05	12.89	0.00	1.895	2.75	0.00	1.9	98.1	0.0	0.06	0.68	0.83	0.83	2.25	55350	3732	9	0	0	0	27681	logfile
✔	7LKF	23405	2021-12-01	2021-02-02	2.9	2.97	—	3.0	0.004	0.66	0.0	0.05	12.84	0.01	2.101	5.26	0.00	4.6	95.4	0.0	-0.59	0.70	0.83	4.15	3.0	0.003	0.61	0.0	0.04	16.60	0.01	2.228	5.01	1.76	3.0	97.0	0.0	-0.15	1.15	0.72	0.86	3.97	4139	511	4	0	2	0	0	logfile
✔	7oP1	13011	2021-12-01	2021-05-28	3.7	3.77	—	3.6	0.004	0.63	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.005	0.61	0.0	0.04	15.18	0.00	1.771	5.46	0.21	4.4	95.6	0.0	0.12	0.29	0.71	0.87	1.58	8744	1098	1	0	3	0	0	logfile

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