Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	7V4i	31712	2023-02-26	2021-08-13	3.3	3.91	—	3.9	0.003	0.58	0.0	0.04	14.20	0.01	2.079	10.38	0.00	5.5	94.5	0.0	-1.15	0.70	0.74	1.97	3.9	0.003	0.60	0.0	0.04	15.97	0.01	2.102	11.33	0.17	4.9	95.1	0.0	-0.92	0.37	0.71	0.75	1.59	27680	3560	10	0	0	0	0	logfile
✔	7JLX	22383	2023-02-17	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6SAG	10130	2023-02-21	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7NVX	12616	2023-02-24	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.82	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	7VB0	31873	2023-02-27	2021-08-30	3.6	2.84	3.39	3.2	0.003	0.55	0.0	0.04	13.49	0.00	1.982	6.16	0.00	1.9	98.1	0.0	0.96	0.63	0.78	2.84	3.2	0.002	0.54	0.0	0.04	16.23	0.00	2.005	8.35	0.23	2.1	97.9	0.0	0.54	0.72	0.65	0.79	2.41	29553	3788	16	0	5	0	0	logfile
✔	7oZP	13131	2023-02-21	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.71	0.0	0.05	16.72	0.00	2.095	15.95	0.33	3.8	96.2	0.0	0.23	0.98	0.83	0.79	1.29	54330	6774	32	0	10	0	0	logfile
✔	6DW1	8923	2023-02-18	2018-06-26	3.1	3.36	—	3.3	0.005	0.91	0.0	0.05	11.32	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.67	0.0	0.04	15.12	0.00	2.114	9.17	0.56	5.7	94.3	0.0	-1.52	0.99	0.70	0.85	4.21	8595	1046	13	0	24	0	0	logfile
✔	7VAK	31845	2023-02-27	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.26	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	7XoC	33344	2023-02-17	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.48	0.0	0.04	9.17	0.00	2.149	5.26	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.62	0.0	0.04	16.35	0.00	2.086	8.52	1.61	3.1	96.9	0.0	0.98	1.11	0.76	0.82	3.22	6432	786	5	0	5	0	0	logfile
✔	6TMJ	10523	2023-02-22	2019-12-04	3.5	3.68	3.39	3.7	0.007	0.62	0.0	0.04	13.81	0.01	2.037	6.53	0.00	8.7	91.3	0.0	-4.51	0.56	0.81	2.54	3.7	0.003	0.56	0.0	0.04	15.61	0.00	2.090	6.58	0.43	3.5	96.5	0.0	1.78	1.41	0.63	0.83	2.29	18084	1204	15	0	0	0	9178	logfile
✔	5MS1	3562	2023-02-17	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.42	0.00	2.162	9.67	0.00	2.9	97.1	0.0	-0.77	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	8B0J	15785	2023-02-26	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	19.83	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.62	0.0	0.04	19.52	0.00	1.931	14.86	0.48	5.0	95.0	0.0	0.11	1.39	0.75	0.74	1.68	28636	1931	7	160	0	0	12434	logfile
✔	8B9Z	15936	2023-02-25	2022-10-10	3.28	3.47	3.46	3.3	0.008	0.86	0.0	0.84	14.70	0.01	1.929	6.28	0.00	3.8	96.2	0.0	-0.52	0.80	0.84	3.18	3.3	0.007	1.35	0.0	0.26	15.95	0.00	2.073	9.37	0.24	3.0	97.0	0.0	0.86	0.44	0.81	0.86	2.65	66970	8178	64	0	39	0	0	logfile
✔	7oNB	12994	2023-02-23	2021-05-25	3.1	3.40	3.04	3.0	0.005	1.01	0.0	0.06	13.91	0.01	2.273	5.59	0.00	3.6	96.4	0.0	-1.28	0.76	0.71	1.66	3.0	0.003	0.63	0.0	0.04	15.77	0.00	2.163	11.13	0.16	3.0	97.0	0.0	-0.08	0.79	0.80	0.82	2.26	20140	2568	14	46	6	0	0	logfile
✔	7RU1	24693	2023-02-25	2021-08-16	2.8	3.31	2.92	3.2	0.020	1.77	0.0	0.11	10.19	0.01	2.402	0.79	0.00	3.0	97.0	0.0	0.58	0.80	0.82	5.05	3.2	0.003	0.62	0.0	0.04	14.42	0.00	2.156	4.88	1.67	3.7	96.2	0.1	0.17	1.21	0.78	0.82	4.45	26493	3294	18	0	54	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7Xo6	33338	2023-02-17	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.55	0.0	0.08	13.22	0.01	2.075	2.54	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.003	0.59	0.0	0.04	17.15	0.00	2.105	9.05	1.90	2.3	97.7	0.0	0.62	2.10	0.79	0.82	3.06	6440	786	5	0	5	0	0	logfile
✔	7UKG	26580	2023-02-18	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	6RiQ	4897	2023-02-27	2019-04-24	3.1	3.19	—	3.3	0.006	1.00	0.0	0.05	14.77	0.00	2.001	7.14	0.00	5.2	94.8	0.0	-4.36	0.63	0.78	2.59	3.3	0.005	0.67	0.0	0.05	16.56	0.00	1.912	10.66	0.82	4.9	95.1	0.0	-1.22	1.95	0.64	0.82	2.53	30327	3971	33	0	22	0	0	logfile

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