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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6CB1 | 7445 | 2023-02-27 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 18.17 | 0.00 | 2.026 | 21.56 | 0.00 | 8.9 | 91.1 | 0.0 | -1.66 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 7V4i | 31712 | 2023-02-26 | 2021-08-13 | 3.3 | 3.91 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 14.20 | 0.01 | 2.079 | 10.38 | 0.00 | 5.5 | 94.5 | 0.0 | -1.15 | 0.70 | 0.74 | 1.97 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.97 | 0.01 | 2.102 | 11.33 | 0.17 | 4.9 | 95.1 | 0.0 | -0.92 | 0.37 | 0.71 | 0.75 | 1.59 | 27680 | 3560 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2023-02-17 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 7.17 | 0.00 | 2.306 | 8.03 | 0.00 | 17.7 | 82.3 | 0.0 | -2.25 | 2.42 | 0.48 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SAG | 10130 | 2023-02-21 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.32 | 0.01 | 2.026 | 3.22 | 1.43 | 2.9 | 97.1 | 0.0 | 1.37 | 0.73 | 0.60 | 0.90 | 6.95 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 7NVX | 12616 | 2023-02-24 | 2021-03-16 | 3.9 | 3.92 | 3.77 | 3.8 | 0.003 | 0.49 | 0.0 | 0.04 | 15.65 | 0.00 | 1.971 | 6.61 | 0.00 | 4.5 | 95.5 | 0.0 | 0.85 | 0.70 | 0.64 | 1.31 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 18.10 | 0.00 | 0.904 | 15.82 | 0.32 | 5.1 | 94.8 | 0.0 | -0.66 | 0.93 | 0.72 | 0.67 | 1.17 | 23663 | 2796 | 18 | 50 | 35 | 0 | 0 | logfile |
✔ | 7VB0 | 31873 | 2023-02-27 | 2021-08-30 | 3.6 | 2.84 | 3.39 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 13.49 | 0.00 | 1.982 | 6.16 | 0.00 | 1.9 | 98.1 | 0.0 | 0.96 | 0.63 | 0.78 | 2.84 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 16.23 | 0.00 | 2.005 | 8.35 | 0.23 | 2.1 | 97.9 | 0.0 | 0.54 | 0.72 | 0.65 | 0.79 | 2.41 | 29553 | 3788 | 16 | 0 | 5 | 0 | 0 | logfile |
✔ | 7oZP | 13131 | 2023-02-21 | 2021-06-28 | 3.8 | 4.17 | 3.83 | 4.0 | 0.002 | 0.39 | 0.0 | 0.04 | 14.04 | 0.00 | 1.969 | 4.71 | 0.00 | 2.1 | 97.9 | 0.0 | 1.24 | 0.79 | 0.71 | 0.86 | 4.0 | 0.004 | 0.71 | 0.0 | 0.05 | 16.72 | 0.00 | 2.095 | 15.95 | 0.33 | 3.8 | 96.2 | 0.0 | 0.23 | 0.98 | 0.83 | 0.79 | 1.29 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 6DW1 | 8923 | 2023-02-18 | 2018-06-26 | 3.1 | 3.36 | — | 3.3 | 0.005 | 0.91 | 0.0 | 0.05 | 11.32 | 0.01 | 2.304 | 4.67 | 0.00 | 5.7 | 94.3 | 0.0 | -3.70 | 0.68 | 0.82 | 4.57 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 15.12 | 0.00 | 2.114 | 9.17 | 0.56 | 5.7 | 94.3 | 0.0 | -1.52 | 0.99 | 0.70 | 0.85 | 4.21 | 8595 | 1046 | 13 | 0 | 24 | 0 | 0 | logfile |
✔ | 7VAK | 31845 | 2023-02-27 | 2021-08-30 | 4.7 | 3.87 | 4.25 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.32 | 0.00 | 2.115 | 9.01 | 0.00 | 2.9 | 97.1 | 0.0 | 0.43 | 0.71 | 0.75 | — | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 14.06 | 0.00 | 2.126 | 11.26 | 0.00 | 4.7 | 95.3 | 0.0 | -0.10 | 1.25 | 0.72 | 0.77 | — | 29462 | 3788 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoC | 33344 | 2023-02-17 | 2022-05-01 | 3.0 | 2.28 | 3.19 | 2.1 | 0.002 | 0.48 | 0.0 | 0.04 | 9.17 | 0.00 | 2.149 | 5.26 | 0.00 | 2.1 | 97.9 | 0.0 | -2.11 | 0.73 | 0.69 | 2.72 | 2.0 | 0.003 | 0.62 | 0.0 | 0.04 | 16.35 | 0.00 | 2.086 | 8.52 | 1.61 | 3.1 | 96.9 | 0.0 | 0.98 | 1.11 | 0.76 | 0.82 | 3.22 | 6432 | 786 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6TMJ | 10523 | 2023-02-22 | 2019-12-04 | 3.5 | 3.68 | 3.39 | 3.7 | 0.007 | 0.62 | 0.0 | 0.04 | 13.81 | 0.01 | 2.037 | 6.53 | 0.00 | 8.7 | 91.3 | 0.0 | -4.51 | 0.56 | 0.81 | 2.54 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.61 | 0.00 | 2.090 | 6.58 | 0.43 | 3.5 | 96.5 | 0.0 | 1.78 | 1.41 | 0.63 | 0.83 | 2.29 | 18084 | 1204 | 15 | 0 | 0 | 0 | 9178 | logfile |
✔ | 5MS1 | 3562 | 2023-02-17 | 2016-12-29 | 4.25 | 4.22 | — | 4.2 | 0.014 | 1.51 | 0.0 | 0.07 | 9.30 | 0.01 | 2.413 | 2.10 | 0.00 | 5.5 | 93.5 | 1.1 | -0.81 | 0.37 | 0.76 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.42 | 0.00 | 2.162 | 9.67 | 0.00 | 2.9 | 97.1 | 0.0 | -0.77 | 1.54 | 0.46 | 0.85 | — | 4350 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B0J | 15785 | 2023-02-26 | 2022-09-07 | 3.99 | 4.45 | 4.02 | 4.1 | 0.009 | 1.30 | 0.0 | 0.08 | 19.83 | 0.01 | 1.945 | 11.42 | 0.00 | 9.7 | 90.3 | 0.0 | -2.43 | 0.73 | 0.68 | 1.71 | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 19.52 | 0.00 | 1.931 | 14.86 | 0.48 | 5.0 | 95.0 | 0.0 | 0.11 | 1.39 | 0.75 | 0.74 | 1.68 | 28636 | 1931 | 7 | 160 | 0 | 0 | 12434 | logfile |
✔ | 8B9Z | 15936 | 2023-02-25 | 2022-10-10 | 3.28 | 3.47 | 3.46 | 3.3 | 0.008 | 0.86 | 0.0 | 0.84 | 14.70 | 0.01 | 1.929 | 6.28 | 0.00 | 3.8 | 96.2 | 0.0 | -0.52 | 0.80 | 0.84 | 3.18 | 3.3 | 0.007 | 1.35 | 0.0 | 0.26 | 15.95 | 0.00 | 2.073 | 9.37 | 0.24 | 3.0 | 97.0 | 0.0 | 0.86 | 0.44 | 0.81 | 0.86 | 2.65 | 66970 | 8178 | 64 | 0 | 39 | 0 | 0 | logfile |
✔ | 7oNB | 12994 | 2023-02-23 | 2021-05-25 | 3.1 | 3.40 | 3.04 | 3.0 | 0.005 | 1.01 | 0.0 | 0.06 | 13.91 | 0.01 | 2.273 | 5.59 | 0.00 | 3.6 | 96.4 | 0.0 | -1.28 | 0.76 | 0.71 | 1.66 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 15.77 | 0.00 | 2.163 | 11.13 | 0.16 | 3.0 | 97.0 | 0.0 | -0.08 | 0.79 | 0.80 | 0.82 | 2.26 | 20140 | 2568 | 14 | 46 | 6 | 0 | 0 | logfile |
✔ | 7RU1 | 24693 | 2023-02-25 | 2021-08-16 | 2.8 | 3.31 | 2.92 | 3.2 | 0.020 | 1.77 | 0.0 | 0.11 | 10.19 | 0.01 | 2.402 | 0.79 | 0.00 | 3.0 | 97.0 | 0.0 | 0.58 | 0.80 | 0.82 | 5.05 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.42 | 0.00 | 2.156 | 4.88 | 1.67 | 3.7 | 96.2 | 0.1 | 0.17 | 1.21 | 0.78 | 0.82 | 4.45 | 26493 | 3294 | 18 | 0 | 54 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-02-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7Xo6 | 33338 | 2023-02-17 | 2022-05-01 | 2.6 | 2.25 | 3.18 | 2.1 | 0.003 | 0.55 | 0.0 | 0.08 | 13.22 | 0.01 | 2.075 | 2.54 | 0.00 | 1.3 | 98.7 | 0.0 | -1.43 | 0.72 | 0.68 | 2.45 | 2.0 | 0.003 | 0.59 | 0.0 | 0.04 | 17.15 | 0.00 | 2.105 | 9.05 | 1.90 | 2.3 | 97.7 | 0.0 | 0.62 | 2.10 | 0.79 | 0.82 | 3.06 | 6440 | 786 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7UKG | 26580 | 2023-02-18 | 2022-04-01 | 2.24 | 2.56 | 2.27 | 2.5 | 0.006 | 0.58 | 0.0 | 0.04 | 13.16 | 0.00 | 2.208 | 6.08 | 0.00 | 1.8 | 98.2 | 0.0 | 2.95 | 0.68 | 0.88 | 4.70 | 2.5 | 0.003 | 0.48 | 0.0 | 0.04 | 13.81 | 0.00 | 2.354 | 5.86 | 0.22 | 1.8 | 98.2 | 0.0 | 3.84 | 0.22 | 0.70 | 0.90 | 4.29 | 8652 | 1128 | 10 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RiQ | 4897 | 2023-02-27 | 2019-04-24 | 3.1 | 3.19 | — | 3.3 | 0.006 | 1.00 | 0.0 | 0.05 | 14.77 | 0.00 | 2.001 | 7.14 | 0.00 | 5.2 | 94.8 | 0.0 | -4.36 | 0.63 | 0.78 | 2.59 | 3.3 | 0.005 | 0.67 | 0.0 | 0.05 | 16.56 | 0.00 | 1.912 | 10.66 | 0.82 | 4.9 | 95.1 | 0.0 | -1.22 | 1.95 | 0.64 | 0.82 | 2.53 | 30327 | 3971 | 33 | 0 | 22 | 0 | 0 | logfile |