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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6EF1 | 9043 | 2022-05-15 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 11.78 | 0.01 | 2.040 | 7.30 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 12.76 | 0.00 | 2.098 | 12.31 | 0.00 | 7.8 | 92.2 | 0.0 | -2.20 | 1.33 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-05-13 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 5XNo | 6744 | 2022-05-13 | 2017-05-23 | 3.5 | 3.75 | — | 3.6 | 0.010 | 1.67 | 0.0 | 0.06 | 15.17 | 0.02 | 1.208 | 9.70 | 0.00 | 4.1 | 95.9 | 0.0 | -2.61 | 0.60 | 0.80 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✔ | 6XYQ | 10652 | 2022-05-12 | 2020-01-30 | 3.09 | 3.30 | 2.79 | 3.3 | 0.007 | 0.71 | 0.0 | 0.05 | 12.97 | 0.00 | 2.130 | 9.08 | 0.00 | 3.5 | 96.5 | 0.0 | -4.52 | 0.46 | 0.84 | 3.97 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 15.09 | 0.00 | 2.232 | 8.09 | 0.82 | 2.3 | 97.7 | 0.0 | -3.28 | 0.44 | 0.47 | 0.86 | 4.77 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6C0W | 7326 | 2022-05-13 | 2018-01-02 | 4.0 | 4.10 | 3.87 | 4.0 | 0.006 | 0.81 | 0.0 | 0.05 | 27.80 | 0.01 | 2.107 | 4.30 | 0.00 | 4.9 | 95.1 | 0.0 | -4.19 | 0.80 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13122 | 925 | 11 | 278 | 0 | 0 | 0 | logfile |
✔ | 6oiF | 20076 | 2022-05-13 | 2019-04-09 | 4.4 | 4.70 | — | 4.6 | 0.008 | 1.21 | 0.0 | 0.05 | 9.73 | 0.01 | 1.596 | 6.18 | 0.00 | 11.4 | 88.6 | 0.0 | -4.69 | 0.65 | 0.66 | — | 4.6 | 0.006 | 0.73 | 0.0 | 0.05 | 12.19 | 0.00 | 1.803 | 28.16 | 0.00 | 10.2 | 89.8 | 0.0 | -2.31 | 1.72 | 0.69 | 0.78 | — | 115025 | 7050 | 49 | 0 | 25 | 0 | 56750 | logfile |
✔ | 6H3C | 0132 | 2022-05-18 | 2018-07-18 | 3.9 | 3.99 | 3.83 | 3.9 | 0.020 | 1.86 | 0.0 | 0.10 | 10.54 | 0.01 | 1.965 | 2.20 | 0.00 | 5.3 | 94.2 | 0.4 | -0.37 | 0.73 | 0.68 | 1.52 | 3.9 | 0.006 | 0.89 | 0.0 | 0.04 | 14.65 | 0.00 | 1.714 | 14.87 | 0.36 | 7.1 | 92.5 | 0.4 | -0.84 | 1.02 | 0.75 | 0.71 | 1.80 | 49982 | 3146 | 14 | 0 | 2 | 2 | 24860 | logfile |
✔ | 6QJP | 4565 | 2022-05-12 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.40 | 0.00 | 2.347 | 10.42 | 0.00 | 1.1 | 98.9 | 0.0 | -3.47 | 1.59 | 0.32 | 0.72 | 4.10 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2022-05-12 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.85 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2022-05-12 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.003 | 0.53 | 0.0 | 0.03 | 11.06 | 0.00 | 2.036 | 9.37 | 0.00 | 1.4 | 98.6 | 0.0 | 2.12 | 1.50 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6N23 | 9321 | 2022-05-13 | 2018-11-12 | 3.1 | 3.91 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 9.58 | 0.01 | 2.231 | 2.60 | 0.00 | 3.3 | 96.7 | 0.0 | -5.52 | 0.79 | 0.87 | 4.09 | 3.6 | 0.002 | 0.55 | 0.0 | 0.04 | 12.60 | 0.00 | 2.275 | 5.29 | 0.12 | 2.2 | 97.8 | 0.0 | 1.96 | 2.23 | 0.71 | 0.83 | 2.76 | 14935 | 1815 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6QJM | 4564 | 2022-05-12 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.58 | 0.0 | 0.06 | 13.83 | 0.00 | 2.178 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.27 | 1.60 | 0.34 | 0.74 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N28 | 9326 | 2022-05-13 | 2018-11-12 | 2.9 | 3.06 | — | 3.1 | 0.006 | 0.78 | 0.0 | 0.05 | 9.54 | 0.01 | 2.215 | 3.56 | 0.00 | 2.4 | 97.6 | 0.0 | -3.44 | 0.75 | 0.87 | 3.66 | 3.1 | 0.005 | 0.59 | 0.0 | 0.04 | 14.04 | 0.01 | 2.196 | 7.41 | 1.32 | 2.5 | 97.5 | 0.0 | 1.45 | 1.98 | 0.77 | 0.89 | 2.94 | 13885 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6N26 | 9324 | 2022-05-13 | 2018-11-12 | 3.0 | 3.29 | — | 3.2 | 0.008 | 0.83 | 0.0 | 0.05 | 9.20 | 0.01 | 2.277 | 2.74 | 0.00 | 3.2 | 96.8 | 0.0 | -6.12 | 0.72 | 0.83 | 4.16 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.89 | 0.00 | 2.208 | 7.03 | 2.01 | 1.1 | 98.9 | 0.0 | 0.77 | 0.72 | 0.72 | 0.84 | 2.60 | 13190 | 1595 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2022-05-14 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 11.67 | 0.00 | 2.145 | 7.83 | 0.00 | 6.1 | 93.9 | 0.0 | -0.50 | 1.54 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N25 | 9323 | 2022-05-13 | 2018-11-12 | 2.7 | 3.35 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 9.28 | 0.01 | 2.307 | 2.34 | 0.00 | 2.1 | 97.9 | 0.0 | -6.12 | 0.77 | 0.88 | 4.62 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 14.78 | 0.00 | 2.220 | 5.66 | 1.70 | 2.3 | 97.7 | 0.0 | 1.08 | 3.82 | 0.66 | 0.83 | 2.97 | 13940 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6N27 | 9325 | 2022-05-13 | 2018-11-12 | 3.0 | 3.04 | — | 3.0 | 0.007 | 0.88 | 0.0 | 0.05 | 9.61 | 0.01 | 2.305 | 3.26 | 0.00 | 1.8 | 98.2 | 0.0 | -2.91 | 0.72 | 0.86 | 4.69 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 14.88 | 0.00 | 2.213 | 4.89 | 0.99 | 1.9 | 98.1 | 0.0 | 1.20 | 1.19 | 0.74 | 0.88 | 3.47 | 13930 | 1695 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 6EF0 | 9042 | 2022-05-15 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.62 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6EF2 | 9044 | 2022-05-15 | 2018-08-15 | 4.27 | 3.17 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.06 | 11.43 | 0.01 | 2.139 | 6.21 | 0.00 | 13.4 | 86.5 | 0.0 | -5.32 | 0.62 | 0.80 | — | 3.9 | 0.005 | 0.82 | 0.0 | 0.05 | 12.92 | 0.00 | 2.087 | 12.25 | 0.00 | 7.8 | 92.1 | 0.1 | -2.11 | 1.62 | 0.63 | 0.82 | — | 24659 | 3290 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2022-05-12 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.66 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 15.39 | 0.00 | 2.012 | 16.29 | 0.52 | 3.9 | 95.9 | 0.1 | -0.67 | 2.27 | 0.82 | 0.76 | 1.04 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |