Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EF1	9043	2022-05-15	2018-08-15	4.73	3.61	—	4.2	0.009	0.99	0.0	0.05	11.78	0.01	2.040	7.30	0.00	14.5	85.5	0.0	-5.20	0.59	0.78	—	4.2	0.004	0.76	0.0	0.04	12.76	0.00	2.098	12.31	0.00	7.8	92.2	0.0	-2.20	1.33	0.60	0.80	—	23658	3294	20	0	6	0	0	logfile
✘	6RKV	4912	2022-05-13	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	5XNo	6744	2022-05-13	2017-05-23	3.5	3.75	—	3.6	0.010	1.67	0.0	0.06	15.17	0.02	1.208	9.70	0.00	4.1	95.9	0.0	-2.61	0.60	0.80	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✔	6XYQ	10652	2022-05-12	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.86	4.77	4955	725	10	0	0	0	0	logfile
✘	6C0W	7326	2022-05-13	2018-01-02	4.0	4.10	3.87	4.0	0.006	0.81	0.0	0.05	27.80	0.01	2.107	4.30	0.00	4.9	95.1	0.0	-4.19	0.80	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13122	925	11	278	0	0	0	logfile
✔	6oiF	20076	2022-05-13	2019-04-09	4.4	4.70	—	4.6	0.008	1.21	0.0	0.05	9.73	0.01	1.596	6.18	0.00	11.4	88.6	0.0	-4.69	0.65	0.66	—	4.6	0.006	0.73	0.0	0.05	12.19	0.00	1.803	28.16	0.00	10.2	89.8	0.0	-2.31	1.72	0.69	0.78	—	115025	7050	49	0	25	0	56750	logfile
✔	6H3C	0132	2022-05-18	2018-07-18	3.9	3.99	3.83	3.9	0.020	1.86	0.0	0.10	10.54	0.01	1.965	2.20	0.00	5.3	94.2	0.4	-0.37	0.73	0.68	1.52	3.9	0.006	0.89	0.0	0.04	14.65	0.00	1.714	14.87	0.36	7.1	92.5	0.4	-0.84	1.02	0.75	0.71	1.80	49982	3146	14	0	2	2	24860	logfile
✔	6QJP	4565	2022-05-12	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6XYP	10651	2022-05-12	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.85	5.05	4955	725	10	0	0	0	0	logfile
✔	6E9Y	9020	2022-05-12	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6N23	9321	2022-05-13	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.231	2.60	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.002	0.55	0.0	0.04	12.60	0.00	2.275	5.29	0.12	2.2	97.8	0.0	1.96	2.23	0.71	0.83	2.76	14935	1815	10	0	5	0	0	logfile
✔	6QJM	4564	2022-05-12	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	6N28	9326	2022-05-13	2018-11-12	2.9	3.06	—	3.1	0.006	0.78	0.0	0.05	9.54	0.01	2.215	3.56	0.00	2.4	97.6	0.0	-3.44	0.75	0.87	3.66	3.1	0.005	0.59	0.0	0.04	14.04	0.01	2.196	7.41	1.32	2.5	97.5	0.0	1.45	1.98	0.77	0.89	2.94	13885	1690	10	0	5	0	0	logfile
✔	6N26	9324	2022-05-13	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.74	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.003	0.65	0.0	0.04	15.89	0.00	2.208	7.03	2.01	1.1	98.9	0.0	0.77	0.72	0.72	0.84	2.60	13190	1595	5	0	0	0	0	logfile
✔	6NAV	0397	2022-05-14	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6N25	9323	2022-05-13	2018-11-12	2.7	3.35	—	3.2	0.008	0.85	0.0	0.05	9.28	0.01	2.307	2.34	0.00	2.1	97.9	0.0	-6.12	0.77	0.88	4.62	3.2	0.003	0.54	0.0	0.04	14.78	0.00	2.220	5.66	1.70	2.3	97.7	0.0	1.08	3.82	0.66	0.83	2.97	13940	1690	10	0	5	0	0	logfile
✔	6N27	9325	2022-05-13	2018-11-12	3.0	3.04	—	3.0	0.007	0.88	0.0	0.05	9.61	0.01	2.305	3.26	0.00	1.8	98.2	0.0	-2.91	0.72	0.86	4.69	3.0	0.002	0.52	0.0	0.04	14.88	0.00	2.213	4.89	0.99	1.9	98.1	0.0	1.20	1.19	0.74	0.88	3.47	13930	1695	10	0	5	0	0	logfile
✘	6EF0	9042	2022-05-15	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	12.59	0.01	2.089	8.62	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24748	3318	20	0	6	0	0	logfile
✔	6EF2	9044	2022-05-15	2018-08-15	4.27	3.17	—	4.0	0.011	1.02	0.0	0.06	11.43	0.01	2.139	6.21	0.00	13.4	86.5	0.0	-5.32	0.62	0.80	—	3.9	0.005	0.82	0.0	0.05	12.92	0.00	2.087	12.25	0.00	7.8	92.1	0.1	-2.11	1.62	0.63	0.82	—	24659	3290	20	0	6	0	0	logfile
✔	6J2Q	9771	2022-05-12	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.66	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.80	0.0	0.04	15.39	0.00	2.012	16.29	0.52	3.9	95.9	0.1	-0.67	2.27	0.82	0.76	1.04	106311	13518	47	0	0	0	0	logfile

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