Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZN2	14799	2023-08-21	2022-04-20	4.29	3.73	4.16	3.5	0.003	0.52	0.0	0.04	13.12	0.00	2.048	7.87	0.00	3.5	96.5	0.0	-1.30	0.80	0.72	—	3.3	0.003	0.62	0.0	0.04	12.96	0.00	2.077	13.72	0.00	3.9	96.1	0.0	-1.13	2.07	0.84	0.80	—	89393	11481	36	0	0	0	0	logfile
✔	7QL1	14060	2023-08-09	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	7W7W	32350	2023-08-10	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.74	0.00	1.537	8.97	0.23	3.9	96.1	0.0	0.72	0.38	0.58	0.75	1.99	7870	1018	1	0	2	0	0	logfile
✔	6E0F	8946	2023-08-13	2018-07-06	3.7	3.77	—	3.9	0.010	1.01	0.0	0.07	9.64	0.01	1.999	13.22	0.00	8.1	91.3	0.6	-4.79	0.71	0.79	3.23	3.8	0.004	0.81	0.0	0.05	16.03	0.00	2.164	18.60	0.41	9.1	90.9	0.0	-1.59	1.31	0.71	0.79	2.28	13650	1740	10	0	0	0	0	logfile
✔	7YAC	33708	2023-08-11	2022-06-27	3.24	2.68	3.20	3.0	0.003	0.77	0.0	0.04	14.58	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.0	0.002	0.60	0.0	0.04	16.62	0.00	2.219	7.08	0.31	4.8	95.2	0.0	-0.05	1.26	0.65	0.81	1.87	8937	1140	6	0	1	0	0	logfile
✔	7W7U	32348	2023-08-10	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.003	0.56	0.0	0.04	16.36	0.00	2.048	8.38	2.32	3.0	97.0	0.0	0.46	1.31	0.60	0.80	1.76	7833	1015	1	0	2	0	0	logfile
✔	8oRE	17121	2023-08-09	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.69	0.0	0.05	17.33	0.00	2.218	3.60	1.00	6.7	93.3	0.0	-1.84	3.46	0.37	0.81	5.04	3615	231	3	0	0	0	1845	logfile
✔	6NT6	0503	2023-08-09	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.002	0.72	0.0	0.04	15.61	0.00	2.295	7.27	0.00	2.7	97.3	0.0	1.43	1.19	0.69	0.80	—	4198	556	2	0	0	0	0	logfile
✔	6N3A	9349	2023-08-09	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.005	0.90	0.0	0.04	18.94	0.00	2.214	16.77	0.68	10.4	89.6	0.0	-5.19	1.68	0.52	0.79	2.83	4310	600	20	0	0	0	0	logfile
✘	6G53	4351	2023-08-27	2018-03-28	4.5	4.86	—	4.3	0.007	1.44	21.0	0.10	21.32	0.00	1.260	2.52	0.00	7.1	92.2	0.7	-2.88	0.67	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49052	5912	37	1659	0	0	0	logfile
✔	7QDR	13923	2023-08-17	2021-11-29	3.7	3.84	3.50	3.7	0.006	0.84	0.0	0.05	14.04	0.01	2.021	12.64	0.00	5.9	94.0	0.1	-1.43	0.81	0.86	2.06	3.7	0.002	0.65	0.0	0.04	15.68	0.00	2.139	8.12	0.25	9.6	90.4	0.0	-0.24	1.15	0.80	0.84	1.80	22818	2991	4	0	0	0	0	logfile
✔	7W9C	32364	2023-08-20	2021-12-09	3.2	3.43	—	3.5	0.004	0.61	0.0	0.04	12.69	0.00	2.079	1.76	0.00	2.8	97.2	0.0	-3.72	0.64	0.69	2.04	3.4	0.003	0.60	0.0	0.04	15.92	0.00	2.159	8.97	0.30	3.2	96.8	0.0	-0.17	1.46	0.67	0.76	1.63	29737	3777	4	0	0	0	0	logfile
✔	7NK9	12434	2023-08-15	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.004	0.55	0.0	0.04	15.16	0.00	2.081	6.69	1.39	0.9	99.1	0.0	3.96	0.45	0.68	0.88	1.31	18081	1225	14	0	0	0	9158	logfile
✔	7TBY	25801	2023-08-13	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	12.90	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.8	0.003	0.65	0.0	0.04	15.01	0.00	2.125	7.99	0.33	5.6	94.4	0.0	0.45	1.06	0.72	0.82	—	13281	1788	4	0	10	0	0	logfile
✔	7E2i	30958	2023-08-11	2021-02-05	4.07	4.31	—	4.1	0.006	0.82	0.0	0.05	14.31	0.00	2.056	20.89	0.00	11.7	88.2	0.1	-4.32	0.62	0.79	—	4.2	0.004	0.81	0.0	0.04	14.31	0.00	2.147	15.65	0.00	10.3	89.7	0.0	-1.49	1.29	0.60	0.77	—	8569	1058	4	0	12	0	0	logfile
✔	7JKQ	22367	2023-08-14	2020-07-28	3.3	3.23	—	3.3	0.007	1.22	1.0	0.07	14.74	0.01	2.238	6.34	0.00	6.2	93.8	0.0	-3.03	0.70	0.80	3.30	3.3	0.003	0.66	0.0	0.04	16.33	0.00	2.069	12.87	0.45	5.7	94.3	0.0	-0.96	1.02	0.67	0.83	3.07	16437	2048	4	0	0	0	0	logfile
✔	7Nii	12360	2023-08-24	2021-02-12	2.88	3.06	—	3.0	0.006	0.69	0.0	0.04	11.05	0.00	1.216	12.41	0.00	3.4	96.6	0.1	-2.73	0.76	0.85	3.60	3.0	0.003	0.68	0.0	0.04	14.36	0.00	1.983	8.08	1.40	3.5	96.5	0.0	1.05	1.35	0.77	0.89	2.91	37235	4772	16	0	16	0	0	logfile
✔	6G51	4350	2023-08-27	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.005	0.87	0.0	0.04	22.63	0.00	1.977	12.39	0.00	13.4	86.5	0.1	-2.16	1.66	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	7Ni2	12349	2023-08-21	2021-02-11	2.89	3.11	—	3.0	0.007	0.70	0.0	0.05	11.38	0.00	2.198	11.77	0.00	3.2	96.8	0.0	-1.51	0.78	0.86	2.96	3.0	0.003	0.69	0.0	0.05	14.58	0.00	2.200	9.45	1.39	3.2	96.8	0.0	0.40	0.49	0.77	0.88	2.31	31344	4080	8	0	0	0	0	logfile
✔	8ED3	28027	2023-08-22	2022-09-02	3.5	3.26	3.44	3.5	0.013	1.18	0.0	0.08	10.35	0.01	2.429	0.01	0.00	2.5	97.5	0.0	-0.72	0.79	0.77	1.60	3.5	0.005	0.62	0.0	0.05	14.87	0.01	2.063	8.07	0.30	2.5	97.5	0.0	0.79	0.88	0.79	0.81	1.42	91140	12060	60	0	0	0	0	logfile

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