Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5V4S	8633	2021-08-08	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	2.99	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.61	0.0	0.04	10.49	0.00	2.215	15.41	0.00	2.9	97.1	0.0	3.19	1.02	0.63	0.76	—	10756	1548	4	0	0	0	0	logfile
✔	6GTD	0062	2021-08-07	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.66	—	3.9	0.003	0.71	0.0	0.04	19.83	0.00	2.147	11.01	0.00	12.9	87.1	0.0	-2.65	1.04	0.78	0.66	—	6456	1269	4	66	0	0	0	logfile
✔	6XWo	10633	2021-08-07	2020-01-24	3.39	4.01	—	3.8	0.006	0.69	0.0	0.04	13.23	0.01	2.167	9.83	0.00	6.0	94.0	0.0	-3.53	0.74	0.82	1.64	3.8	0.003	0.66	0.0	0.04	15.00	0.00	2.167	9.58	0.00	2.9	97.1	0.0	1.08	1.17	0.73	0.85	0.96	9555	1281	3	0	0	0	0	logfile
✔	6Ni2	9375	2021-08-07	2018-12-26	4.0	4.38	—	4.1	0.009	1.31	0.0	0.07	10.25	0.01	2.245	6.60	0.00	6.7	93.1	0.1	-1.50	0.75	0.71	—	4.1	0.004	0.78	0.0	0.04	15.32	0.01	2.198	13.20	0.35	5.3	94.7	0.0	-0.15	1.41	0.75	0.72	—	5381	704	5	0	0	0	0	logfile
✔	6XWR	10636	2021-08-07	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	10.98	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	3.7	0.004	0.70	0.0	0.04	13.91	0.01	2.194	11.59	0.20	3.1	96.9	0.0	1.34	1.15	0.72	0.85	1.44	9564	1278	3	0	0	0	0	logfile
✔	6RWX	10045	2021-08-10	2019-06-06	3.55	3.70	3.34	3.6	0.009	0.89	0.0	0.06	9.10	0.01	2.192	3.26	0.00	8.3	91.7	0.0	-2.76	0.81	0.86	3.14	3.6	0.004	0.60	0.0	0.04	15.76	0.00	2.120	8.07	0.26	6.0	94.0	0.0	0.72	0.68	0.76	0.87	2.38	70968	8784	48	0	0	0	0	logfile
✔	6N2P	9332	2021-08-08	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.60	0.0	0.04	11.00	0.00	2.186	6.18	0.00	7.3	92.7	0.0	0.72	1.42	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6ERi	3941	2021-08-13	2017-10-18	3.0	3.06	3.00	3.0	0.003	0.45	0.0	0.03	11.66	0.00	1.251	2.49	0.00	4.3	95.7	0.0	-3.80	0.66	0.74	2.70	3.0	0.006	0.70	0.0	0.04	15.03	0.01	1.831	8.28	3.78	5.2	94.8	0.0	-0.92	1.23	0.79	0.86	2.61	145026	6178	66	4401	515	0	0	logfile
✔	6KKU	0703	2021-08-07	2019-07-27	3.5	3.59	—	3.6	0.009	1.06	0.0	0.06	10.69	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.68	0.0	0.04	14.56	0.00	2.211	6.35	0.45	2.4	97.6	0.0	1.33	1.31	0.61	0.82	1.48	8412	1074	4	0	20	0	0	logfile
✔	6JBJ	9791	2021-08-07	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.53	0.00	9.1	90.9	0.0	-6.19	0.65	0.82	2.03	3.7	0.005	0.79	0.0	0.04	17.99	0.01	2.060	17.86	0.59	8.4	91.6	0.0	-1.65	1.21	0.65	0.82	1.27	9166	1130	4	0	2	0	0	logfile
✔	6NF6	9361	2021-08-07	2018-12-18	3.32	3.42	—	3.4	0.020	1.58	0.0	0.22	16.56	0.01	2.309	4.98	0.00	4.5	95.2	0.3	-2.74	0.54	0.79	2.76	3.4	0.003	0.60	0.0	0.04	16.63	0.00	2.141	13.91	0.28	4.9	95.1	0.0	2.46	0.58	0.56	0.80	2.34	6598	822	4	0	2	0	0	logfile
✔	6NZU	0560	2021-08-09	2019-02-14	3.2	3.33	3.22	3.3	0.013	0.89	0.0	0.06	14.62	0.01	2.057	2.18	0.00	7.3	92.7	0.0	-5.92	0.71	0.84	3.98	3.3	0.003	0.62	0.0	0.04	15.97	0.00	2.202	6.51	0.07	5.0	95.0	0.0	-1.37	0.56	0.73	0.88	3.09	12570	1588	16	0	6	0	0	logfile
✔	6MGV	9112	2021-08-07	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.63	0.0	0.04	14.03	0.01	2.116	7.27	0.28	3.3	96.7	0.0	1.51	2.13	0.69	0.84	2.65	10150	1268	2	0	0	0	0	logfile
✔	5FLM	3218	2021-08-10	2015-10-26	3.4	3.52	—	3.5	0.004	0.74	0.0	0.05	11.28	0.00	2.034	14.55	0.00	5.1	94.9	0.0	-2.61	0.51	0.66	2.61	3.5	0.008	0.86	2.0	0.04	15.51	0.01	1.746	13.83	0.20	4.5	95.4	0.1	-0.45	0.67	0.69	0.83	1.91	32712	3896	21	80	9	0	0	logfile
✔	6C9K	7437	2021-08-11	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.60	0.0	0.04	14.67	0.00	2.163	15.69	0.28	1.9	98.1	0.0	3.50	0.95	0.81	0.67	-0.02	37632	4923	24	0	0	0	0	logfile
✔	6J99	9783	2021-08-09	2019-01-22	4.1	4.24	—	4.2	0.008	0.97	1.0	0.05	26.76	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.007	1.01	0.0	0.04	27.19	0.01	1.970	24.62	0.10	5.4	94.6	0.0	-0.82	2.28	0.78	0.79	—	15266	1164	12	289	0	0	0	logfile
✔	6UPK	20840	2021-08-08	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.95	0.0	0.05	20.35	0.01	1.570	20.32	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.64	0.0	0.04	22.39	0.00	1.972	26.23	0.00	5.1	94.9	0.0	-1.03	2.98	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	6FN4	4282	2021-08-08	2018-02-02	4.14	4.24	—	4.2	0.005	0.81	0.0	0.05	9.96	0.01	2.096	8.79	0.00	7.5	91.3	1.2	-2.94	0.68	0.74	—	4.2	0.003	0.65	0.0	0.04	12.44	0.00	2.191	8.55	0.00	3.9	96.0	0.1	0.23	1.72	0.71	0.76	—	12702	1626	4	0	4	0	0	logfile
✔	6PB1	20285	2021-08-07	2019-06-12	2.8	3.39	—	3.4	0.017	0.86	0.0	0.42	9.19	0.01	2.288	4.32	0.00	1.9	98.1	0.0	-2.93	0.56	0.75	2.79	3.4	0.004	0.97	0.0	0.13	15.48	0.00	2.186	11.43	2.04	2.9	97.1	0.0	0.36	1.29	0.54	0.78	2.86	8785	1069	7	0	9	0	0	logfile
✔	5TCQ	8399	2021-08-11	2016-09-15	3.6	3.82	—	3.7	0.013	1.55	0.0	0.06	8.28	0.01	2.447	1.52	0.00	3.3	94.0	2.7	-0.03	0.80	0.79	2.33	3.7	0.004	0.68	0.0	0.04	12.04	0.00	2.144	6.41	0.18	3.2	96.7	0.1	0.84	0.76	0.84	0.87	2.37	39180	5040	15	0	0	0	0	logfile

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