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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BVP | 30220 | 2024-04-16 | 2020-04-11 | 3.45 | 3.54 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 13.82 | 0.01 | 2.094 | 5.34 | 3.34 | 4.3 | 95.7 | 0.0 | -5.97 | 0.74 | 0.79 | 2.71 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.13 | 0.00 | 1.933 | 7.42 | 2.95 | 4.1 | 95.9 | 0.0 | -1.06 | 1.30 | 0.78 | 0.87 | 2.34 | 40146 | 5214 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 6EU1 | 3956 | 2024-04-16 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.14 | 0.0 | 0.06 | 13.02 | 0.01 | 1.732 | 6.52 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✔ | 7P6K | 13230 | 2024-04-16 | 2021-07-16 | 3.8 | 3.45 | 3.78 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 11.36 | 0.00 | 2.230 | 9.61 | 3.89 | 3.6 | 96.4 | 0.0 | -0.13 | 0.73 | 0.70 | 1.00 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 14.42 | 0.00 | 2.170 | 15.03 | 4.03 | 5.5 | 94.5 | 0.0 | -0.47 | 0.63 | 0.71 | 0.68 | 0.94 | 38106 | 4650 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W1J | 21511 | 2024-04-09 | 2020-03-04 | 2.92 | 3.34 | 2.83 | 3.2 | 0.010 | 1.17 | 0.0 | 0.10 | 13.56 | 0.01 | 2.337 | 2.46 | 0.82 | 5.6 | 94.4 | 0.0 | -5.20 | 0.76 | 0.88 | 4.98 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 13.28 | 0.00 | 2.264 | 5.36 | 2.40 | 4.1 | 95.9 | 0.0 | -0.53 | 1.02 | 0.75 | 0.89 | 3.47 | 16861 | 1965 | 25 | 0 | 41 | 0 | 0 | logfile |
✔ | 6U9E | 20695 | 2024-04-09 | 2019-09-08 | 4.21 | 4.33 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 9.09 | 0.00 | 2.228 | 5.86 | 0.00 | 14.1 | 85.9 | 0.0 | -4.33 | 0.79 | 0.82 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.05 | 11.62 | 0.00 | 2.172 | 11.54 | 0.10 | 13.5 | 86.5 | 0.0 | -2.96 | 1.36 | 0.79 | 0.82 | — | 17175 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KLX | 0721 | 2024-04-10 | 2019-07-30 | 2.9 | 3.09 | — | 3.0 | 0.008 | 0.70 | 0.0 | 0.05 | 13.80 | 0.01 | 2.177 | 6.64 | 0.13 | 6.8 | 93.2 | 0.0 | -3.59 | 0.73 | 0.85 | 4.20 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 15.84 | 0.00 | 2.015 | 6.71 | 1.93 | 5.3 | 94.7 | 0.0 | -0.80 | 1.18 | 0.74 | 0.86 | 3.85 | 20055 | 2576 | 14 | 0 | 14 | 0 | 0 | logfile |
✔ | 7B1G | 11985 | 2024-04-11 | 2020-11-24 | 3.6 | 3.70 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.05 | 15.84 | 0.00 | 2.213 | 12.50 | 0.09 | 7.4 | 92.6 | 0.0 | -2.22 | 0.79 | 0.85 | 2.34 | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 17.40 | 0.00 | 2.155 | 9.65 | 1.87 | 4.4 | 95.6 | 0.0 | 0.30 | 0.38 | 0.78 | 0.83 | 1.28 | 21661 | 2689 | 9 | 0 | 8 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2024-04-10 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 7DD9 | 30650 | 2024-04-16 | 2020-10-28 | 2.4 | 2.49 | 2.37 | 2.4 | 0.007 | 0.71 | 0.0 | 0.05 | 15.88 | 0.00 | 1.932 | 8.69 | 1.93 | 7.1 | 92.9 | 0.0 | -1.19 | 0.79 | 0.87 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37149 | 4516 | 12 | 0 | 12 | 949 | 0 | logfile |
✔ | 6UGM | 20765 | 2024-04-15 | 2019-09-26 | 3.7 | 3.82 | — | 3.7 | 0.010 | 1.30 | 16.0 | 0.07 | 24.27 | 0.01 | 1.984 | 8.31 | 1.24 | 6.5 | 93.4 | 0.1 | -5.54 | 0.75 | 0.74 | 1.35 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 24.39 | 0.00 | 2.049 | 13.87 | 2.54 | 6.8 | 93.1 | 0.0 | -2.52 | 0.52 | 0.79 | 0.79 | 0.89 | 23609 | 2205 | 19 | 292 | 2 | 0 | 0 | logfile |
✔ | 7SoE | 25268 | 2024-04-12 | 2021-10-29 | 2.8 | 2.87 | 2.84 | 2.8 | 0.010 | 1.29 | 0.0 | 0.07 | 9.44 | 0.01 | 2.416 | 1.06 | 0.15 | 2.0 | 98.0 | 0.0 | 0.29 | 0.74 | 0.80 | 3.95 | 2.8 | 0.004 | 0.64 | 0.0 | 0.05 | 12.52 | 0.00 | 2.131 | 3.17 | 2.33 | 2.2 | 97.8 | 0.0 | 0.59 | 0.53 | 0.73 | 0.85 | 3.44 | 25947 | 3783 | 15 | 0 | 57 | 0 | 0 | logfile |
✘ | 7M18 | 23615 | 2024-04-05 | 2021-03-12 | 3.38 | 4.09 | — | 4.1 | 0.007 | 1.37 | 0.0 | 0.17 | 18.71 | 0.01 | 1.728 | 23.77 | 0.28 | 10.4 | 89.3 | 0.3 | -2.48 | 0.74 | 0.73 | 0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54064 | 6904 | 32 | 8 | 16 | 0 | 0 | logfile |
✔ | 6LXW | 30008 | 2024-04-08 | 2020-02-12 | 3.27 | 3.40 | 3.32 | 3.4 | 0.015 | 1.27 | 0.0 | 0.07 | 15.58 | 0.01 | 2.241 | 6.38 | 1.82 | 13.2 | 86.7 | 0.1 | -4.21 | 0.74 | 0.81 | 2.94 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.68 | 0.00 | 2.171 | 10.39 | 5.16 | 8.7 | 91.3 | 0.0 | -1.89 | 0.95 | 0.73 | 0.83 | 2.55 | 12299 | 1595 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2024-04-16 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.05 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.003 | 0.81 | 0.0 | 0.04 | 15.10 | 0.00 | 2.016 | 13.52 | 2.04 | 11.5 | 88.3 | 0.3 | -2.44 | 1.48 | 0.54 | 0.49 | 0.40 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 7KYC | 23075 | 2024-04-08 | 2020-12-07 | 2.8 | 2.92 | — | 2.9 | 0.012 | 1.07 | 3.0 | 0.07 | 19.68 | 0.01 | 1.822 | 16.02 | 12.05 | 4.0 | 95.7 | 0.3 | -1.91 | 0.73 | 0.89 | 3.58 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 17.96 | 0.00 | 1.925 | 9.07 | 3.50 | 4.1 | 95.8 | 0.1 | 0.32 | 0.47 | 0.71 | 0.90 | 3.66 | 12697 | 1552 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 7WN6 | 32622 | 2024-04-16 | 2022-01-17 | 3.29 | 3.41 | — | 3.6 | 0.007 | 1.11 | 0.0 | 0.09 | 10.59 | 0.01 | 2.016 | 5.21 | 0.44 | 11.9 | 87.9 | 0.2 | -4.63 | 0.75 | 0.66 | 1.28 | 3.3 | 0.005 | 0.98 | 2.0 | 0.05 | 15.07 | 0.00 | 2.012 | 12.74 | 2.54 | 8.1 | 91.9 | 0.0 | -2.47 | 1.52 | 0.80 | 0.78 | 1.48 | 36584 | 4756 | 16 | 0 | 36 | 0 | 0 | logfile |
✔ | 8DNP | 27576 | 2024-04-15 | 2022-07-11 | 2.69 | 2.56 | 2.88 | 2.7 | 0.010 | 1.16 | 0.0 | 0.08 | 12.98 | 0.00 | 1.768 | 10.47 | 1.31 | 2.3 | 97.7 | 0.0 | 0.44 | 0.76 | 0.82 | 4.00 | 2.7 | 0.004 | 0.90 | 4.0 | 0.04 | 19.08 | 0.00 | 1.858 | 12.18 | 2.15 | 1.6 | 98.4 | 0.0 | 5.72 | 0.66 | 0.73 | 0.83 | 3.82 | 33936 | 4128 | 48 | 0 | 24 | 0 | 0 | logfile |
✔ | 7VYA | 32198 | 2024-04-13 | 2021-11-13 | 2.8 | 2.89 | — | 2.8 | 0.008 | 0.80 | 1.0 | 0.05 | 15.16 | 0.01 | 2.190 | 10.09 | 0.23 | 3.6 | 96.2 | 0.1 | -0.02 | 0.77 | 0.87 | 3.56 | 2.8 | 0.005 | 0.60 | 0.0 | 0.04 | 17.29 | 0.00 | 2.118 | 6.89 | 2.00 | 3.7 | 96.2 | 0.0 | 0.29 | 1.24 | 0.78 | 0.90 | 3.67 | 28031 | 3488 | 27 | 0 | 17 | 0 | 0 | logfile |
✔ | 7WoC | 32648 | 2024-04-05 | 2022-01-21 | 3.35 | 3.49 | — | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 9.58 | 0.00 | 2.288 | 6.75 | 4.60 | 6.3 | 93.7 | 0.0 | -4.80 | 0.72 | 0.76 | 2.37 | 3.4 | 0.004 | 0.71 | 0.0 | 0.05 | 15.13 | 0.00 | 2.163 | 12.85 | 4.98 | 11.5 | 88.5 | 0.0 | -2.96 | 1.25 | 0.75 | 0.83 | 2.50 | 4746 | 610 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PDH | 13338 | 2024-04-05 | 2021-08-05 | 4.0 | 3.51 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 14.16 | 0.00 | 2.169 | 14.32 | 0.00 | 5.8 | 94.2 | 0.0 | -1.07 | 0.79 | 0.69 | — | 3.2 | 0.002 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.198 | 13.98 | 2.08 | 6.2 | 93.8 | 0.0 | -0.70 | 0.86 | 0.79 | 0.70 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |