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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Y9A | 10734 | 2024-04-05 | 2020-03-06 | 4.2 | 5.61 | — | 5.7 | 0.004 | 0.81 | 0.0 | 0.05 | 13.59 | 0.01 | 2.211 | 10.90 | 0.00 | 5.9 | 94.1 | 0.0 | -1.17 | 0.53 | 0.44 | — | 5.6 | 0.003 | 0.70 | 0.0 | 0.04 | 13.61 | 0.01 | 2.157 | 14.42 | 0.00 | 4.8 | 95.2 | 0.0 | 0.30 | 1.37 | 0.55 | 0.65 | — | 5948 | 776 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGR | 22329 | 2024-04-11 | 2020-07-19 | 3.9 | 4.26 | 3.87 | 3.9 | 0.006 | 0.95 | 0.0 | 0.05 | 17.95 | 0.01 | 1.799 | 5.63 | 0.36 | 4.1 | 95.9 | 0.0 | -2.88 | 0.87 | 0.84 | 1.46 | 3.9 | 0.007 | 0.77 | 0.0 | 0.04 | 18.75 | 0.00 | 1.722 | 16.38 | 2.16 | 3.5 | 96.5 | 0.0 | 0.96 | 2.28 | 0.89 | 0.87 | 1.60 | 21717 | 2531 | 13 | 68 | 8 | 0 | 0 | logfile |
✔ | 6X9R | 22108 | 2024-04-10 | 2020-06-03 | 3.1 | 3.17 | 3.07 | 3.1 | 0.025 | 1.72 | 0.0 | 0.10 | 11.45 | 0.01 | 2.228 | 0.93 | 0.44 | 3.3 | 96.4 | 0.3 | 0.53 | 0.77 | 0.86 | 3.97 | 3.1 | 0.004 | 0.66 | 0.0 | 0.05 | 13.58 | 0.00 | 2.108 | 5.03 | 2.44 | 5.3 | 94.6 | 0.1 | 0.18 | 0.67 | 0.76 | 0.89 | 3.24 | 19590 | 2358 | 33 | 0 | 87 | 0 | 0 | logfile |
✔ | 6JXR | 9895 | 2024-04-06 | 2019-04-24 | 3.7 | 3.95 | — | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 10.83 | 0.01 | 2.273 | 5.82 | 0.74 | 7.2 | 92.6 | 0.2 | -3.45 | 0.69 | 0.78 | 2.74 | 3.9 | 0.004 | 0.71 | 0.0 | 0.04 | 15.87 | 0.00 | 2.122 | 12.77 | 4.04 | 7.0 | 92.8 | 0.2 | -0.22 | 1.71 | 0.67 | 0.80 | 2.15 | 8437 | 1073 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EPM | 28530 | 2024-04-09 | 2022-10-06 | 3.1 | 3.22 | 3.12 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 18.04 | 0.00 | 2.203 | 7.74 | 0.55 | 5.8 | 94.1 | 0.1 | -0.05 | 0.62 | 0.84 | 2.62 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.14 | 0.00 | 2.159 | 6.69 | 3.49 | 5.8 | 94.2 | 0.1 | 0.47 | 1.17 | 0.60 | 0.83 | 2.51 | 15458 | 1939 | 9 | 0 | 17 | 0 | 0 | logfile |
✘ | 7UHG | 26514 | 2024-04-10 | 2022-03-26 | 3.0 | 3.13 | — | 3.1 | 0.004 | 0.58 | 0.0 | 0.05 | 16.29 | 0.00 | 2.167 | 7.48 | 0.09 | 4.4 | 95.5 | 0.1 | -1.09 | 0.60 | 0.83 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20414 | 2502 | 11 | 0 | 23 | 0 | 0 | logfile |
✔ | 7LTo | 23517 | 2024-04-05 | 2021-02-19 | 3.2 | 3.37 | — | 3.3 | 0.003 | 0.71 | 0.0 | 0.05 | 15.41 | 0.00 | 2.232 | 11.24 | 3.25 | 9.1 | 90.9 | 0.0 | -4.26 | 0.71 | 0.77 | 2.73 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.97 | 0.00 | 2.188 | 8.03 | 4.67 | 7.4 | 92.6 | 0.0 | -0.52 | 1.16 | 0.70 | 0.79 | 2.12 | 4754 | 605 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2024-04-09 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 8.54 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.006 | 0.95 | 0.0 | 0.05 | 14.65 | 0.01 | 2.096 | 20.66 | 2.59 | 8.3 | 91.7 | 0.0 | -2.44 | 2.06 | 0.68 | 0.64 | 0.63 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7V9U | 31827 | 2024-04-07 | 2021-08-26 | 3.12 | 3.31 | — | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 25.35 | 0.01 | 2.180 | 10.84 | 0.00 | 6.2 | 93.8 | 0.0 | -1.53 | 0.75 | 0.78 | 3.58 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 25.28 | 0.00 | 2.147 | 10.72 | 2.17 | 5.4 | 94.6 | 0.0 | -1.01 | 1.23 | 0.76 | 0.80 | 3.36 | 9354 | 618 | 8 | 209 | 0 | 0 | 0 | logfile |
✔ | 7M6N | 23701 | 2024-04-08 | 2021-03-26 | 2.61 | 3.47 | 2.67 | 3.2 | 0.009 | 1.28 | 0.0 | 0.08 | 11.87 | 0.01 | 2.228 | 4.91 | 0.31 | 1.7 | 98.3 | 0.0 | 0.23 | 0.86 | 0.85 | 3.28 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.50 | 0.00 | 2.183 | 8.55 | 1.18 | 1.6 | 98.4 | 0.0 | 1.27 | 0.63 | 0.83 | 0.85 | 3.04 | 14700 | 1810 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7UB2 | 26434 | 2024-04-09 | 2022-03-14 | 3.4 | 3.54 | 3.54 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 21.08 | 0.00 | 2.134 | 4.67 | 0.60 | 0.5 | 99.5 | 0.0 | 0.65 | 0.59 | 0.85 | 1.32 | 3.5 | 0.002 | 0.52 | 0.0 | 0.04 | 21.09 | 0.00 | 2.279 | 4.11 | 3.59 | 2.1 | 97.9 | 0.0 | 0.74 | 0.38 | 0.66 | 0.88 | 1.16 | 17579 | 1910 | 12 | 98 | 0 | 0 | 0 | logfile |
✔ | 7Qo7 | 14086 | 2024-04-12 | 2021-12-23 | 3.02 | 3.67 | — | 3.4 | 0.004 | 0.64 | 0.0 | 0.05 | 21.44 | 0.00 | 2.165 | 6.51 | 0.07 | 6.0 | 93.8 | 0.2 | -0.66 | 0.80 | 0.82 | 2.27 | 3.4 | 0.002 | 0.60 | 0.0 | 0.05 | 15.46 | 0.00 | 2.141 | 7.51 | 0.84 | 6.6 | 93.2 | 0.3 | -0.90 | 0.43 | 0.79 | 0.83 | 2.26 | 26865 | 3295 | 29 | 0 | 81 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2024-04-05 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.49 | 0.0 | 0.03 | 15.37 | 0.00 | 2.207 | 3.05 | 1.73 | 0.6 | 99.4 | 0.0 | 5.36 | 3.07 | 0.73 | 0.87 | 2.50 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AQT | 15589 | 2024-04-05 | 2022-08-13 | 4.4 | 4.64 | 4.72 | 4.5 | 0.003 | 0.70 | 1.0 | 0.04 | 14.46 | 0.01 | 2.165 | 9.80 | 0.45 | 5.4 | 93.8 | 0.8 | -1.80 | 0.59 | 0.59 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.05 | 14.55 | 0.00 | 2.124 | 11.34 | 0.15 | 5.7 | 94.2 | 0.1 | -1.24 | 1.65 | 0.62 | 0.63 | — | 6321 | 777 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6oER | 20035 | 2024-04-10 | 2019-03-27 | 3.29 | 3.60 | — | 3.4 | 0.007 | 0.78 | 0.0 | 0.05 | 20.06 | 0.01 | 1.709 | 13.72 | 0.30 | 9.5 | 90.3 | 0.2 | -4.65 | 0.85 | 0.84 | 3.60 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 20.63 | 0.00 | 2.223 | 10.48 | 0.73 | 5.3 | 94.6 | 0.1 | -0.84 | 1.60 | 0.86 | 0.85 | 2.57 | 19482 | 1952 | 11 | 206 | 6 | 0 | 0 | logfile |
✘ | 7MiY | 23868 | 2024-04-11 | 2021-04-18 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21483 | 2598 | 10 | 0 | 28 | 0 | 0 | logfile |
✘ | 7MiX | 23867 | 2024-04-11 | 2021-04-18 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21652 | 2623 | 11 | 0 | 28 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2024-04-13 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.131 | 22.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2024-04-05 | 2022-04-21 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7E7i | 31000 | 2024-04-09 | 2021-02-26 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.16 | 1.0 | 0.06 | 18.45 | 0.01 | 1.593 | 13.82 | 1.82 | 15.3 | 84.0 | 0.8 | -4.06 | 0.71 | 0.84 | 3.18 | 3.4 | 0.003 | 0.72 | 0.0 | 0.04 | 16.70 | 0.00 | 2.152 | 7.07 | 2.77 | 10.8 | 89.1 | 0.1 | -1.77 | 0.43 | 0.71 | 0.84 | 1.86 | 15724 | 2011 | 4 | 0 | 19 | 0 | 0 | logfile |