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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QLD | 4579 | 2024-04-13 | 2019-01-31 | 4.15 | 4.29 | — | 4.1 | 0.004 | 0.86 | 1.0 | 0.05 | 21.70 | 0.01 | 2.289 | 5.03 | 0.25 | 5.1 | 94.8 | 0.2 | -3.52 | 0.83 | 0.76 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 21.26 | 0.00 | 2.175 | 13.11 | 0.12 | 5.8 | 94.2 | 0.0 | 1.00 | 0.70 | 0.83 | 0.76 | — | 29086 | 3157 | 22 | 248 | 0 | 0 | 0 | logfile |
✔ | 7VYF | 32203 | 2024-04-13 | 2021-11-14 | 2.8 | 2.86 | — | 2.8 | 0.007 | 0.75 | 0.0 | 0.05 | 14.27 | 0.01 | 2.078 | 6.44 | 0.03 | 3.9 | 96.0 | 0.1 | -0.15 | 0.74 | 0.88 | 4.24 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 16.35 | 0.00 | 2.171 | 6.24 | 1.51 | 3.4 | 96.5 | 0.0 | 0.23 | 0.31 | 0.75 | 0.90 | 3.88 | 28456 | 3543 | 27 | 0 | 17 | 0 | 0 | logfile |
✔ | 6XJB | 22205 | 2024-04-07 | 2020-06-23 | 3.8 | 4.06 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 13.11 | 0.00 | 2.165 | 9.70 | 0.00 | 8.6 | 91.4 | 0.0 | -3.06 | 0.88 | 0.82 | 1.76 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.36 | 0.00 | 2.083 | 12.82 | 4.27 | 7.5 | 92.5 | 0.0 | -1.34 | 1.82 | 0.88 | 0.85 | 1.85 | 10070 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VHN | 32000 | 2024-04-12 | 2021-09-22 | 3.8 | 3.96 | — | 3.8 | 0.006 | 0.85 | 1.0 | 0.06 | 13.37 | 0.02 | 1.473 | 11.70 | 0.72 | 7.7 | 92.2 | 0.1 | -2.94 | 0.85 | 0.83 | 2.37 | 3.9 | 0.005 | 0.67 | 0.0 | 0.04 | 14.77 | 0.00 | 2.089 | 9.95 | 1.83 | 7.2 | 92.8 | 0.0 | -1.66 | 0.44 | 0.85 | 0.84 | 2.02 | 25403 | 3192 | 6 | 0 | 31 | 0 | 0 | logfile |
✔ | 7MQF | 23945 | 2024-04-11 | 2021-05-05 | 2.88 | 2.74 | 2.86 | 2.8 | 0.006 | 0.72 | 0.0 | 0.06 | 13.21 | 0.00 | 2.175 | 1.01 | 0.00 | 0.5 | 99.5 | 0.0 | 1.24 | 0.72 | 0.87 | 6.16 | 2.7 | 0.005 | 0.56 | 0.0 | 0.05 | 14.57 | 0.00 | 2.250 | 2.35 | 0.00 | 1.5 | 98.5 | 0.0 | 0.81 | 0.27 | 0.77 | 0.91 | 5.71 | 12288 | 1608 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7TC0 | 25803 | 2024-04-08 | 2021-12-22 | 3.1 | 3.02 | 2.78 | 3.2 | 0.003 | 0.59 | 3.0 | 0.04 | 15.73 | 0.01 | 1.817 | 8.24 | 2.49 | 4.1 | 95.9 | 0.0 | -1.78 | 0.74 | 0.81 | 1.67 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 15.03 | 0.00 | 2.151 | 6.74 | 2.70 | 5.0 | 95.0 | 0.0 | 0.69 | 1.31 | 0.77 | 0.89 | 2.28 | 13809 | 1781 | 4 | 0 | 11 | 0 | 0 | logfile |
✔ | 7NEQ | 12290 | 2024-04-08 | 2021-02-04 | 3.12 | 2.80 | — | 3.1 | 0.007 | 0.79 | 0.0 | 0.05 | 16.91 | 0.00 | 1.600 | 15.40 | 5.56 | 7.9 | 92.1 | 0.0 | -3.70 | 0.74 | 0.81 | 3.24 | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 17.19 | 0.00 | 2.208 | 8.74 | 6.59 | 6.9 | 93.1 | 0.0 | -1.01 | 0.79 | 0.75 | 0.83 | 3.27 | 12529 | 1582 | 11 | 0 | 7 | 16 | 0 | logfile |
✔ | 6FFC | 4256 | 2024-04-06 | 2018-01-06 | 3.56 | 3.73 | — | 3.7 | 0.009 | 1.09 | 0.0 | 0.06 | 11.44 | 0.01 | 2.235 | 3.86 | 0.00 | 3.9 | 95.9 | 0.2 | -3.27 | 0.70 | 0.86 | 3.78 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.02 | 0.00 | 2.188 | 9.38 | 2.16 | 3.4 | 96.6 | 0.0 | 1.23 | 1.00 | 0.71 | 0.86 | 2.47 | 8974 | 1144 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WHW | 32513 | 2024-04-08 | 2021-12-31 | 3.1 | 2.64 | — | 3.0 | 0.009 | 1.17 | 0.0 | 0.07 | 12.72 | 0.01 | 2.107 | 7.84 | 0.54 | 8.4 | 91.6 | 0.1 | -5.16 | 0.62 | 0.76 | 3.64 | 3.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.70 | 0.00 | 1.970 | 13.50 | 2.63 | 6.9 | 93.1 | 0.0 | -1.67 | 0.64 | 0.63 | 0.80 | 3.04 | 11978 | 1488 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6HTS | 3954 | 2024-04-16 | 2018-10-04 | 4.8 | 5.78 | — | 4.7 | 0.004 | 0.55 | 0.0 | 0.04 | 17.81 | 0.00 | 1.820 | 11.76 | 1.39 | 1.7 | 98.3 | 0.0 | -2.23 | 0.86 | 0.69 | — | 4.7 | 0.004 | 0.67 | 0.0 | 0.04 | 19.07 | 0.00 | 2.042 | 21.63 | 0.00 | 3.5 | 96.5 | 0.0 | 0.64 | 3.55 | 0.88 | 0.79 | — | 38744 | 4453 | 26 | 300 | 7 | 0 | 0 | logfile |
✔ | 8FK7 | 29249 | 2024-04-10 | 2022-12-20 | 4.3 | 4.38 | 4.11 | 4.2 | 0.003 | 0.56 | 0.0 | 0.05 | 11.64 | 0.00 | 2.156 | 10.45 | 0.00 | 0.7 | 99.3 | 0.0 | 2.48 | 0.56 | 0.82 | — | 4.2 | 0.004 | 0.61 | 0.0 | 0.05 | 12.21 | 0.00 | 2.140 | 11.57 | 0.09 | 0.6 | 99.4 | 0.0 | 2.35 | 0.55 | 0.57 | 0.83 | — | 19740 | 2720 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BC2 | 15960 | 2024-04-09 | 2022-10-14 | 2.6 | 2.43 | 2.67 | 2.8 | 0.012 | 1.66 | 0.0 | 0.10 | 18.31 | 0.03 | 2.311 | 3.08 | 13.21 | 4.2 | 95.8 | 0.0 | -4.52 | 0.75 | 0.85 | 4.09 | 2.7 | 0.003 | 0.55 | 0.0 | 0.04 | 17.09 | 0.00 | 2.079 | 5.04 | 1.07 | 1.8 | 98.2 | 0.0 | 1.88 | 1.05 | 0.76 | 0.87 | 4.40 | 16770 | 2180 | 20 | 0 | 0 | 460 | 0 | logfile |
✔ | 6K7i | 9934 | 2024-04-07 | 2019-06-07 | 3.22 | 3.34 | 3.11 | 3.3 | 0.015 | 1.31 | 0.0 | 0.08 | 15.64 | 0.01 | 2.253 | 5.97 | 0.78 | 8.9 | 90.7 | 0.4 | -4.41 | 0.60 | 0.84 | 3.87 | 3.3 | 0.002 | 0.64 | 0.0 | 0.04 | 16.05 | 0.00 | 2.102 | 8.42 | 1.30 | 5.5 | 94.5 | 0.0 | -0.80 | 0.45 | 0.68 | 0.82 | 2.76 | 10590 | 1310 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7DCE | 30636 | 2024-04-06 | 2020-10-26 | 3.8 | 4.00 | — | 3.9 | 0.009 | 1.21 | 0.0 | 0.06 | 15.00 | 0.01 | 2.220 | 11.92 | 3.27 | 7.4 | 92.3 | 0.2 | -3.04 | 0.70 | 0.81 | 1.88 | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 16.82 | 0.00 | 2.196 | 14.67 | 4.31 | 5.3 | 94.7 | 0.0 | 1.32 | 1.42 | 0.69 | 0.81 | 2.07 | 7102 | 912 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2024-04-06 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 0.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 0.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 7EGM | 31136 | 2024-04-10 | 2021-03-24 | 3.6 | 3.90 | — | 3.7 | 0.005 | 0.81 | 0.0 | 0.05 | 15.46 | 0.01 | 1.440 | 6.88 | 8.61 | 6.3 | 93.4 | 0.3 | -3.86 | 0.81 | 0.81 | 1.89 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.26 | 0.00 | 2.137 | 8.94 | 4.06 | 6.8 | 93.2 | 0.0 | 0.44 | 0.67 | 0.81 | 0.81 | 1.32 | 19819 | 2431 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KZ4 | 0785 | 2024-04-09 | 2019-09-23 | 3.0 | 3.18 | — | 3.1 | 0.005 | 0.64 | 0.0 | 0.05 | 13.57 | 0.00 | 2.170 | 10.13 | 0.00 | 9.5 | 90.5 | 0.0 | -4.51 | 0.80 | 0.86 | 2.99 | 3.1 | 0.004 | 0.66 | 0.0 | 0.05 | 15.66 | 0.00 | 2.151 | 9.87 | 2.62 | 9.8 | 90.2 | 0.0 | -2.04 | 1.42 | 0.79 | 0.87 | 3.08 | 16698 | 2196 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K7N | 9942 | 2024-04-07 | 2019-06-07 | 2.84 | 2.94 | 2.68 | 2.9 | 0.013 | 1.53 | 0.0 | 0.07 | 16.04 | 0.01 | 2.046 | 6.84 | 0.44 | 8.0 | 91.9 | 0.1 | -3.74 | 0.61 | 0.85 | 3.92 | 2.9 | 0.004 | 0.67 | 0.0 | 0.04 | 16.16 | 0.00 | 1.936 | 10.29 | 2.09 | 6.3 | 93.7 | 0.0 | -0.63 | 0.43 | 0.65 | 0.88 | 3.45 | 10544 | 1308 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 6U9F | 20696 | 2024-04-10 | 2019-09-08 | 4.35 | 4.41 | — | 4.3 | 0.009 | 1.10 | 0.0 | 0.06 | 9.47 | 0.01 | 2.193 | 7.59 | 0.15 | 13.4 | 86.6 | 0.0 | -4.71 | 0.78 | 0.78 | — | 4.3 | 0.002 | 0.64 | 0.0 | 0.05 | 12.11 | 0.00 | 2.104 | 11.49 | 0.00 | 7.4 | 92.6 | 0.0 | -1.94 | 0.85 | 0.79 | 0.79 | — | 19179 | 2550 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N23 | 9321 | 2024-04-09 | 2018-11-12 | 3.1 | 3.91 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 9.58 | 0.01 | 2.231 | 2.43 | 0.00 | 3.3 | 96.7 | 0.0 | -5.52 | 0.79 | 0.87 | 4.09 | 3.6 | 0.002 | 0.55 | 0.0 | 0.04 | 12.61 | 0.00 | 2.264 | 5.02 | 1.04 | 2.1 | 97.9 | 0.0 | 1.95 | 2.23 | 0.71 | 0.83 | 2.85 | 14935 | 1815 | 10 | 0 | 5 | 0 | 0 | logfile |