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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UM2 | 20816 | 2024-04-08 | 2019-10-08 | 4.32 | 4.49 | — | 4.3 | 0.013 | 1.78 | 10.0 | 0.09 | 15.41 | 0.01 | 1.505 | 10.33 | 0.41 | 6.7 | 92.9 | 0.4 | -4.93 | 0.73 | 0.67 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.05 | 13.63 | 0.01 | 2.061 | 14.94 | 0.00 | 12.1 | 87.9 | 0.0 | -3.70 | 1.39 | 0.79 | 0.75 | — | 13094 | 1686 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 7U5C | 26346 | 2024-04-14 | 2022-03-02 | 4.6 | 4.72 | 4.53 | 4.6 | 0.006 | 0.87 | 1.0 | 0.05 | 15.09 | 0.01 | 1.932 | 28.65 | 0.39 | 16.4 | 83.6 | 0.1 | -5.85 | 0.77 | 0.76 | — | 4.6 | 0.003 | 0.71 | 0.0 | 0.04 | 14.55 | 0.01 | 1.968 | 16.14 | 0.00 | 9.2 | 90.8 | 0.0 | -2.25 | 0.70 | 0.77 | 0.76 | — | 30077 | 3740 | 12 | 4 | 5 | 0 | 0 | logfile |
✔ | 6PSN | 20459 | 2024-04-14 | 2019-07-12 | 4.6 | 4.92 | — | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 9.42 | 0.01 | 2.107 | 7.18 | 0.65 | 3.2 | 96.8 | 0.0 | -1.98 | 0.81 | 0.80 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 10.42 | 0.00 | 2.077 | 14.26 | 0.00 | 4.7 | 95.3 | 0.0 | -0.13 | 2.25 | 0.81 | 0.78 | — | 32830 | 4154 | 15 | 0 | 14 | 0 | 0 | logfile |
✔ | 7JPS | 22421 | 2024-04-09 | 2020-08-09 | 4.4 | 5.22 | — | 3.8 | 0.006 | 1.19 | 1.0 | 0.06 | 16.82 | 0.01 | 2.102 | 4.24 | 0.00 | 3.1 | 96.9 | 0.0 | -2.45 | 0.67 | 0.46 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.25 | 0.00 | 1.963 | 15.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.13 | 2.69 | 0.84 | 0.72 | — | 16352 | 1932 | 11 | 26 | 7 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2024-04-11 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.8 | 0.003 | 0.73 | 0.0 | 0.04 | 12.90 | 0.00 | 2.145 | 14.98 | 0.00 | 10.1 | 89.7 | 0.1 | -1.36 | 3.44 | 0.75 | 0.53 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XW3 | 33490 | 2024-04-08 | 2022-05-26 | 4.04 | 4.31 | 4.11 | 4.2 | 0.009 | 1.24 | 4.0 | 0.07 | 16.20 | 0.01 | 2.218 | 16.13 | 2.51 | 8.4 | 91.5 | 0.1 | -4.09 | 0.72 | 0.64 | — | 4.2 | 0.005 | 0.81 | 0.0 | 0.05 | 15.01 | 0.01 | 1.984 | 16.58 | 0.00 | 7.4 | 92.5 | 0.1 | -1.59 | 1.35 | 0.72 | 0.64 | — | 12081 | 1502 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWF | 20507 | 2024-04-09 | 2019-07-22 | 4.07 | 4.13 | — | 4.1 | 0.009 | 1.01 | 0.0 | 0.06 | 26.98 | 0.01 | 2.066 | 6.15 | 0.11 | 9.8 | 90.2 | 0.0 | -6.10 | 0.64 | 0.76 | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 26.90 | 0.00 | 2.060 | 11.29 | 0.00 | 6.9 | 93.1 | 0.0 | -2.60 | 1.13 | 0.64 | 0.76 | — | 15197 | 1208 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 5WVE | 6690 | 2024-04-12 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.50 | 0.01 | 1.493 | 69.05 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | 4.5 | 0.004 | 0.84 | 0.0 | 0.04 | 13.65 | 0.00 | 1.771 | 25.54 | 0.00 | 7.8 | 91.5 | 0.7 | -1.97 | 1.60 | 0.79 | 0.60 | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2024-04-07 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 24.88 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.005 | 0.87 | 0.0 | 0.05 | 13.20 | 0.00 | 2.038 | 27.53 | 0.00 | 18.3 | 81.7 | 0.1 | -3.49 | 1.35 | 0.74 | 0.73 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YQ6 | 34021 | 2024-04-08 | 2022-08-05 | 4.18 | 4.67 | 4.33 | 4.4 | 0.019 | 1.34 | 0.0 | 0.06 | 19.26 | 0.03 | 2.222 | 7.46 | 0.35 | 8.5 | 91.5 | 0.0 | -3.94 | 0.84 | 0.79 | — | 4.4 | 0.003 | 1.03 | 0.0 | 0.05 | 18.60 | 0.01 | 2.160 | 16.08 | 0.00 | 10.1 | 89.9 | 0.0 | -2.55 | 0.69 | 0.84 | 0.78 | — | 13990 | 1592 | 4 | 48 | 0 | 0 | 0 | logfile |
✔ | 7SQQ | 25390 | 2024-04-15 | 2021-11-06 | 4.2 | 7.22 | 4.25 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 13.76 | 0.00 | 1.134 | 8.38 | 0.00 | 3.1 | 96.9 | 0.0 | 1.04 | 0.93 | 0.83 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.50 | 0.00 | 2.206 | 10.84 | 0.00 | 3.5 | 96.5 | 0.0 | 1.22 | 0.82 | 0.92 | 0.86 | — | 103632 | 13296 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VQi | 21351 | 2024-04-05 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 4.43 | 0.00 | 2.212 | 4.17 | 0.00 | 6.5 | 93.4 | 0.1 | 1.98 | 0.77 | 0.56 | 0.74 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DK2 | 27481 | 2024-04-11 | 2022-07-01 | 4.1 | 4.81 | 4.17 | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 13.70 | 0.00 | 1.988 | 7.72 | 2.88 | 3.7 | 96.3 | 0.0 | 2.05 | 0.84 | 0.80 | — | 4.1 | 0.002 | 0.49 | 0.0 | 0.04 | 14.12 | 0.00 | 2.038 | 6.61 | 0.00 | 3.4 | 96.6 | 0.0 | 2.16 | 0.58 | 0.85 | 0.80 | — | 23727 | 2840 | 12 | 52 | 4 | 0 | 0 | logfile |
✔ | 6UDA | 20735 | 2024-04-11 | 2019-09-19 | 4.2 | 4.81 | — | 4.4 | 0.017 | 1.89 | 3.0 | 0.22 | 11.96 | 0.01 | 2.004 | 2.10 | 0.34 | 2.4 | 97.1 | 0.5 | 0.89 | 0.71 | 0.65 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 12.44 | 0.00 | 2.109 | 12.33 | 0.00 | 5.6 | 94.3 | 0.1 | -0.33 | 0.83 | 0.85 | 0.83 | — | 23733 | 3024 | 18 | 0 | 18 | 0 | 0 | logfile |
✔ | 5U0P | 8479 | 2024-04-10 | 2016-11-26 | 4.4 | 4.99 | — | 4.2 | 0.007 | 1.19 | 1.0 | 0.05 | 8.61 | 0.01 | 1.541 | 18.54 | 0.00 | 8.3 | 88.2 | 3.4 | -2.22 | 0.75 | 0.62 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 11.05 | 0.00 | 2.046 | 15.42 | 0.00 | 7.9 | 91.4 | 0.6 | -0.16 | 1.61 | 0.82 | 0.78 | — | 20268 | 2557 | 16 | 0 | 372 | 0 | 0 | logfile |
✔ | 8HAL | 34595 | 2024-04-09 | 2022-10-26 | 4.4 | 3.43 | 4.32 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 24.76 | 0.00 | 2.187 | 12.41 | 0.00 | 1.7 | 98.3 | 0.0 | 1.26 | 0.85 | 0.73 | — | 2.9 | 0.004 | 0.66 | 0.0 | 0.04 | 26.61 | 0.00 | 2.151 | 17.87 | 0.00 | 2.3 | 97.7 | 0.0 | 0.87 | 2.70 | 0.87 | 0.79 | — | 16585 | 1292 | 11 | 302 | 0 | 0 | 0 | logfile |
✔ | 7M7G | 23712 | 2024-04-12 | 2021-03-28 | 4.1 | 4.36 | — | 4.2 | 0.012 | 1.67 | 59.0 | 0.10 | 19.69 | 0.01 | 1.751 | 14.96 | 18.86 | 9.1 | 90.9 | 0.0 | -4.21 | 0.69 | 0.51 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.46 | 0.00 | 2.083 | 19.78 | 0.00 | 6.0 | 94.0 | 0.1 | -1.44 | 2.54 | 0.82 | 0.76 | — | 26480 | 3557 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2024-04-09 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 18.29 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 17.09 | 0.00 | 1.997 | 30.54 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 6VFK | 21185 | 2024-04-16 | 2020-01-05 | 4.25 | 4.39 | 4.20 | 4.3 | 0.021 | 1.41 | 0.0 | 0.09 | 10.30 | 0.01 | 2.389 | 0.73 | 0.00 | 1.3 | 98.7 | 0.0 | 2.59 | 0.84 | 0.81 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 13.06 | 0.00 | 2.204 | 9.04 | 0.00 | 1.4 | 98.4 | 0.2 | 4.06 | 1.00 | 0.84 | 0.83 | — | 37032 | 4764 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8Y | 22735 | 2024-04-13 | 2020-09-27 | 4.4 | 5.34 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.05 | 10.96 | 0.00 | 1.137 | 21.70 | 0.04 | 2.8 | 97.0 | 0.3 | -2.11 | 0.80 | 0.77 | — | 4.4 | 0.004 | 0.66 | 0.0 | 0.04 | 11.44 | 0.00 | 2.045 | 19.44 | 0.00 | 5.6 | 94.2 | 0.2 | -0.67 | 1.16 | 0.82 | 0.82 | — | 25560 | 3242 | 8 | 0 | 23 | 0 | 0 | logfile |