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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UBS | 20714 | 2024-04-09 | 2019-09-12 | 3.33 | 3.89 | 3.31 | 3.6 | 0.006 | 0.98 | 0.0 | 0.06 | 16.05 | 0.01 | 2.194 | 5.31 | 1.22 | 4.2 | 95.8 | 0.0 | -4.10 | 0.81 | 0.81 | 1.71 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.31 | 0.00 | 2.148 | 8.79 | 3.30 | 5.0 | 95.0 | 0.0 | 0.23 | 0.84 | 0.84 | 0.87 | 2.32 | 15270 | 1810 | 15 | 0 | 25 | 0 | 0 | logfile |
✔ | 6U8A | 20686 | 2024-04-10 | 2019-09-04 | 3.4 | 3.52 | 3.45 | 3.5 | 0.008 | 0.97 | 0.0 | 0.05 | 15.90 | 0.01 | 2.296 | 3.45 | 0.37 | 3.6 | 96.4 | 0.0 | -3.94 | 0.68 | 0.82 | 2.60 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 16.88 | 0.00 | 2.225 | 7.78 | 1.82 | 1.9 | 98.1 | 0.0 | 1.19 | 0.53 | 0.68 | 0.83 | 2.37 | 20032 | 2468 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 8F5Z | 28869 | 2024-04-08 | 2022-11-15 | 3.2 | 2.36 | — | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 17.24 | 0.01 | 2.234 | 9.25 | 0.47 | 2.5 | 97.5 | 0.0 | 0.05 | 0.75 | 0.77 | 1.85 | 2.1 | 0.003 | 0.62 | 0.0 | 0.04 | 17.69 | 0.00 | 2.222 | 11.04 | 5.30 | 2.7 | 97.3 | 0.0 | 0.22 | 0.33 | 0.75 | 0.76 | 1.77 | 13598 | 1724 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7PMX | 13543 | 2024-04-07 | 2021-09-03 | 3.5 | 3.85 | 3.50 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 10.52 | 0.00 | 2.134 | 6.34 | 2.13 | 3.2 | 96.8 | 0.0 | 0.60 | 0.61 | 0.80 | 1.97 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 13.04 | 0.00 | 2.128 | 7.88 | 1.60 | 4.2 | 95.8 | 0.0 | 1.24 | 0.99 | 0.61 | 0.79 | 1.43 | 10417 | 659 | 2 | 0 | 0 | 0 | 5253 | logfile |
✔ | 6QS8 | 4627 | 2024-04-14 | 2019-02-20 | 3.9 | 4.01 | 3.80 | 3.9 | 0.011 | 1.05 | 0.0 | 0.06 | 11.14 | 0.01 | 2.018 | 5.95 | 0.17 | 6.7 | 93.3 | 0.0 | -3.91 | 0.75 | 0.76 | 2.00 | 3.9 | 0.004 | 0.82 | 1.0 | 0.04 | 15.56 | 0.00 | 1.849 | 16.42 | 2.06 | 4.8 | 95.2 | 0.0 | 0.16 | 1.00 | 0.78 | 0.82 | 1.66 | 28875 | 3603 | 13 | 0 | 43 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2024-04-13 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 11.08 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.005 | 0.89 | 1.0 | 0.05 | 16.89 | 0.01 | 1.698 | 22.36 | 1.98 | 5.5 | 94.5 | 0.0 | -0.45 | 1.39 | 0.74 | 0.77 | 0.76 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 7WTA | 32773 | 2024-04-11 | 2022-02-04 | 3.9 | 6.12 | — | 3.5 | 0.008 | 0.82 | 0.0 | 0.04 | 13.25 | 0.00 | 2.171 | 19.58 | 0.00 | 8.2 | 91.8 | 0.0 | -0.51 | 0.89 | 0.81 | 0.46 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 14.65 | 0.00 | 2.070 | 15.62 | 1.11 | 6.7 | 93.2 | 0.1 | -0.55 | 0.42 | 0.89 | 0.81 | 0.46 | 21080 | 2736 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7LFX | 23308 | 2024-04-09 | 2021-01-19 | 3.1 | 2.80 | — | 3.0 | 0.012 | 0.64 | 0.0 | 0.05 | 13.11 | 0.00 | 2.226 | 9.82 | 0.25 | 2.3 | 97.7 | 0.0 | -1.18 | 0.64 | 0.81 | 2.40 | 3.0 | 0.003 | 0.51 | 0.0 | 0.04 | 15.87 | 0.00 | 2.258 | 15.29 | 1.91 | 3.3 | 96.7 | 0.0 | 0.82 | 0.80 | 0.64 | 0.86 | 2.77 | 14846 | 1800 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 7o73 | 12744 | 2024-04-11 | 2021-04-12 | 3.4 | 3.36 | 3.51 | 3.3 | 0.002 | 0.44 | 2.0 | 0.04 | 14.45 | 0.00 | 1.888 | 4.22 | 0.01 | 2.2 | 97.8 | 0.0 | 1.66 | 0.79 | 0.78 | 1.84 | 3.3 | 0.004 | 0.67 | 1.0 | 0.04 | 16.80 | 0.00 | 2.001 | 11.03 | 1.78 | 3.1 | 96.9 | 0.0 | 0.38 | 1.30 | 0.80 | 0.81 | 1.69 | 73768 | 8880 | 43 | 130 | 22 | 0 | 0 | logfile |
✔ | 6E7Z | 9002 | 2024-04-09 | 2018-07-27 | 3.73 | 3.74 | — | 3.7 | 0.011 | 1.20 | 0.0 | 0.49 | 17.18 | 0.01 | 2.249 | 6.03 | 0.06 | 10.8 | 89.2 | 0.0 | -5.80 | 0.58 | 0.77 | 2.35 | 3.7 | 0.003 | 0.82 | 0.0 | 0.04 | 16.86 | 0.00 | 2.183 | 9.20 | 4.31 | 8.6 | 91.4 | 0.0 | -1.95 | 0.88 | 0.58 | 0.77 | 1.15 | 15616 | 1900 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7TJH | 25925 | 2024-04-11 | 2022-01-16 | 2.5 | 3.01 | 2.54 | 2.7 | 0.005 | 0.91 | 0.0 | 0.05 | 19.97 | 0.01 | 2.076 | 3.51 | 2.06 | 3.0 | 97.0 | 0.0 | -1.38 | 0.83 | 0.89 | 3.79 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 19.42 | 0.00 | 1.910 | 6.58 | 1.66 | 2.8 | 97.2 | 0.0 | 1.26 | 0.65 | 0.84 | 0.91 | 3.47 | 23899 | 2689 | 22 | 82 | 8 | 148 | 0 | logfile |
✔ | 6H67 | 0146 | 2024-04-15 | 2018-07-26 | 3.6 | 3.68 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.06 | 11.07 | 0.01 | 2.050 | 5.44 | 0.05 | 7.5 | 92.5 | 0.0 | -4.14 | 0.68 | 0.72 | 2.07 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.74 | 0.00 | 1.951 | 11.14 | 2.01 | 4.8 | 95.2 | 0.0 | -1.26 | 3.27 | 0.69 | 0.74 | 1.45 | 33803 | 4140 | 22 | 43 | 7 | 0 | 0 | logfile |
✔ | 7V0Y | 26953 | 2024-04-05 | 2022-05-11 | 3.0 | 2.81 | 2.91 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 19.40 | 0.00 | 2.203 | 5.27 | 1.46 | 1.5 | 98.5 | 0.0 | 0.80 | 0.62 | 0.85 | 3.45 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 19.52 | 0.00 | 2.064 | 9.75 | 2.49 | 1.6 | 98.4 | 0.0 | 1.03 | 0.35 | 0.61 | 0.86 | 3.13 | 4454 | 558 | 3 | 0 | 0 | 1 | 0 | logfile |
✔ | 6QVU | 4657 | 2024-04-07 | 2019-03-05 | 4.2 | 6.05 | 4.20 | 6.9 | 0.006 | 1.31 | 0.0 | 0.06 | 12.34 | 0.01 | 2.191 | 10.73 | 1.99 | 9.3 | 90.7 | 0.0 | -4.21 | 0.65 | 0.75 | — | 7.0 | 0.003 | 0.88 | 0.0 | 0.05 | 11.30 | 0.01 | 2.202 | 18.48 | 0.00 | 7.1 | 92.9 | 0.0 | -0.51 | 1.38 | 0.66 | 0.76 | — | 9272 | 1198 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RH9 | 24458 | 2024-04-08 | 2021-07-16 | 2.61 | 2.09 | — | 2.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.27 | 0.01 | 2.214 | 5.79 | 0.00 | 1.3 | 98.7 | 0.0 | 1.30 | 0.64 | 0.84 | 4.07 | 2.5 | 0.004 | 0.55 | 0.0 | 0.04 | 15.60 | 0.00 | 2.189 | 9.07 | 1.24 | 1.6 | 98.4 | 0.0 | 2.40 | 0.91 | 0.64 | 0.86 | 3.98 | 14680 | 1792 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RHH | 24461 | 2024-04-08 | 2021-07-17 | 3.31 | 3.03 | — | 3.0 | 0.012 | 0.65 | 0.0 | 0.05 | 13.00 | 0.00 | 2.231 | 5.58 | 0.06 | 2.2 | 97.8 | 0.0 | 0.69 | 0.68 | 0.84 | 2.48 | 3.0 | 0.003 | 0.48 | 0.0 | 0.04 | 14.41 | 0.00 | 2.203 | 8.93 | 1.75 | 2.0 | 98.0 | 0.0 | 1.60 | 0.35 | 0.69 | 0.87 | 2.37 | 14717 | 1784 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8AG5 | 15416 | 2024-04-08 | 2022-07-19 | 3.47 | 2.11 | — | 1.9 | 0.003 | 0.49 | 0.0 | 0.04 | 17.82 | 0.00 | 2.194 | 6.46 | 0.26 | 3.8 | 96.2 | 0.0 | 0.35 | 0.75 | 0.75 | 3.20 | 1.9 | 0.002 | 0.49 | 0.0 | 0.04 | 17.78 | 0.00 | 2.206 | 6.76 | 2.55 | 3.8 | 96.2 | 0.0 | 0.65 | 0.24 | 0.76 | 0.78 | 2.88 | 13762 | 1703 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AA3 | 11689 | 2024-04-06 | 2020-09-03 | 3.56 | 3.97 | 3.53 | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.11 | 0.00 | 2.046 | 9.33 | 0.00 | 10.1 | 89.9 | 0.0 | -3.38 | 0.75 | 0.80 | 3.29 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.68 | 0.00 | 2.108 | 8.29 | 1.77 | 8.5 | 91.5 | 0.0 | -1.84 | 0.31 | 0.74 | 0.79 | 1.93 | 8389 | 1094 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LFY | 23309 | 2024-04-09 | 2021-01-19 | 3.6 | 3.05 | — | 3.4 | 0.012 | 0.64 | 0.0 | 0.05 | 13.11 | 0.00 | 2.226 | 10.09 | 0.25 | 2.3 | 97.7 | 0.0 | -1.18 | 0.65 | 0.81 | 2.47 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 15.61 | 0.00 | 2.130 | 12.50 | 2.47 | 2.2 | 97.8 | 0.0 | 0.93 | 1.13 | 0.67 | 0.82 | 1.44 | 14851 | 1800 | 12 | 0 | 7 | 4 | 0 | logfile |
✔ | 7FD9 | 31537 | 2024-04-07 | 2021-07-16 | 4.0 | 4.34 | 3.85 | 3.8 | 0.007 | 1.28 | 0.0 | 0.13 | 17.54 | 0.00 | 2.266 | 9.05 | 0.00 | 6.4 | 93.6 | 0.0 | -0.84 | 0.71 | 0.80 | — | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 14.70 | 0.00 | 2.186 | 12.10 | 1.94 | 6.4 | 93.6 | 0.0 | -0.32 | 0.99 | 0.72 | 0.82 | — | 11476 | 1534 | 4 | 0 | 4 | 0 | 0 | logfile |