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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DLo | 27508 | 2024-04-12 | 2022-07-08 | 2.25 | 2.89 | 2.48 | 2.7 | 0.005 | 0.78 | 0.0 | 0.06 | 13.69 | 0.01 | 2.276 | 3.05 | 0.00 | 2.6 | 97.4 | 0.0 | -0.19 | 0.77 | 0.82 | 3.35 | 2.7 | 0.005 | 0.59 | 0.0 | 0.05 | 14.42 | 0.00 | 2.146 | 8.31 | 0.80 | 3.2 | 96.8 | 0.0 | -0.02 | 0.39 | 0.77 | 0.83 | 3.02 | 25257 | 3120 | 24 | 0 | 60 | 0 | 0 | logfile |
✔ | 7MJM | 23878 | 2024-04-15 | 2021-04-20 | 2.83 | 3.74 | — | 3.0 | 0.004 | 0.78 | 0.0 | 0.05 | 13.35 | 0.01 | 2.285 | 2.96 | 0.00 | 2.7 | 97.3 | 0.0 | -0.95 | 0.83 | 0.79 | 2.12 | 3.1 | 0.008 | 0.74 | 0.0 | 0.05 | 14.77 | 0.00 | 2.076 | 12.66 | 0.69 | 3.9 | 96.1 | 0.0 | 0.19 | 1.59 | 0.84 | 0.82 | 2.19 | 35096 | 4312 | 28 | 0 | 68 | 0 | 0 | logfile |
✔ | 7SXZ | 25511 | 2024-04-13 | 2021-11-24 | 2.61 | 3.54 | — | 2.9 | 0.005 | 0.82 | 0.0 | 0.06 | 12.89 | 0.01 | 2.280 | 3.23 | 0.00 | 2.0 | 98.0 | 0.0 | -0.12 | 0.83 | 0.83 | 2.27 | 2.9 | 0.005 | 0.61 | 0.0 | 0.04 | 14.18 | 0.00 | 2.158 | 9.57 | 0.65 | 2.5 | 97.5 | 0.0 | 0.87 | 1.55 | 0.83 | 0.84 | 2.57 | 28583 | 3517 | 26 | 0 | 64 | 0 | 0 | logfile |
✔ | 6KPE | 0743 | 2024-04-07 | 2019-08-15 | 2.83 | 4.04 | — | 3.7 | 0.009 | 0.82 | 0.0 | 0.14 | 13.07 | 0.00 | 2.040 | 13.53 | 0.00 | 10.4 | 89.6 | 0.0 | -5.24 | 0.83 | 0.84 | 3.18 | 3.5 | 0.005 | 0.83 | 0.0 | 0.16 | 15.58 | 0.00 | 2.046 | 11.01 | 1.62 | 7.2 | 92.8 | 0.0 | -0.52 | 1.69 | 0.83 | 0.85 | 3.39 | 62184 | 3936 | 24 | 0 | 12 | 0 | 31212 | logfile |
✔ | 7E9P | 31035 | 2024-04-05 | 2021-03-04 | 3.69 | 4.11 | — | 4.0 | 0.005 | 0.78 | 0.0 | 0.05 | 16.13 | 0.00 | 2.218 | 11.34 | 0.00 | 7.5 | 92.5 | 0.0 | -2.51 | 0.74 | 0.81 | 2.88 | 4.0 | 0.004 | 0.69 | 0.0 | 0.05 | 15.30 | 0.00 | 2.170 | 12.28 | 2.03 | 6.4 | 93.6 | 0.0 | -1.78 | 1.18 | 0.74 | 0.82 | 2.17 | 4898 | 639 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WR2 | 21875 | 2024-04-17 | 2020-04-29 | 2.88 | 3.14 | — | 3.1 | 0.014 | 0.88 | 0.0 | 0.06 | 12.47 | 0.01 | 2.203 | 4.10 | 0.00 | 0.1 | 99.9 | 0.0 | -0.06 | 0.51 | 0.72 | 2.95 | 3.1 | 0.004 | 0.56 | 0.0 | 0.04 | 17.08 | 0.00 | 1.927 | 6.42 | 1.78 | 2.4 | 97.6 | 0.0 | 1.07 | 1.57 | 0.69 | 0.88 | 4.06 | 42671 | 2729 | 34 | 0 | 0 | 14 | 21361 | logfile |
✘ | 8F6E | 28881 | 2024-04-07 | 2022-11-16 | 3.8 | 4.02 | 3.70 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.52 | 0.00 | 2.060 | 5.75 | 0.00 | 5.4 | 94.2 | 0.4 | -0.77 | 0.72 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10478 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2024-04-09 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 18.29 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 17.09 | 0.00 | 1.997 | 30.54 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 7SXY | 25510 | 2024-04-06 | 2021-11-24 | 2.79 | 3.53 | — | 3.2 | 0.005 | 0.84 | 0.0 | 0.06 | 13.17 | 0.01 | 2.303 | 2.81 | 0.00 | 1.3 | 98.7 | 0.0 | -0.48 | 0.82 | 0.87 | 3.37 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 14.78 | 0.00 | 2.219 | 7.03 | 0.71 | 1.9 | 98.1 | 0.0 | 1.67 | 0.41 | 0.82 | 0.87 | 3.05 | 6557 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 7MBV | 23748 | 2024-04-14 | 2021-04-01 | 2.8 | 3.34 | — | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 12.27 | 0.01 | 2.280 | 6.88 | 0.00 | 2.3 | 97.7 | 0.0 | 1.48 | 0.77 | 0.82 | 3.83 | 3.1 | 0.007 | 0.64 | 0.0 | 0.04 | 14.05 | 0.00 | 2.247 | 5.77 | 1.15 | 3.8 | 96.2 | 0.0 | 2.29 | 0.44 | 0.75 | 0.91 | 3.42 | 30804 | 3984 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 6JD1 | 9801 | 2024-04-07 | 2019-01-30 | 3.38 | 4.55 | — | 3.9 | 0.013 | 1.00 | 0.0 | 0.05 | 16.01 | 0.00 | 2.005 | 6.39 | 0.00 | 7.3 | 92.7 | 0.0 | -4.95 | 0.85 | 0.70 | 1.18 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 15.93 | 0.00 | 1.753 | 18.27 | 1.77 | 8.7 | 91.3 | 0.0 | -2.57 | 1.32 | 0.89 | 0.85 | 1.80 | 63427 | 3953 | 36 | 0 | 60 | 192 | 31469 | logfile |
✘ | 6DNF | 7971 | 2024-04-08 | 2018-06-06 | 3.2 | 4.05 | — | 4.0 | 0.009 | 1.06 | 0.0 | 0.04 | 9.99 | 0.01 | 2.295 | 2.79 | 0.00 | 4.6 | 95.4 | 0.0 | -1.20 | 0.59 | 0.77 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14119 | 900 | 8 | 0 | 11 | 0 | 6868 | logfile |
✔ | 7ZS9 | 14927 | 2024-04-13 | 2022-05-06 | 3.1 | 2.94 | 3.01 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 16.83 | 0.01 | 2.117 | 5.57 | 0.00 | 2.5 | 97.5 | 0.0 | -0.69 | 0.77 | 0.74 | 1.70 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 18.95 | 0.00 | 2.094 | 12.34 | 2.16 | 2.9 | 97.1 | 0.0 | 0.58 | 1.65 | 0.78 | 0.80 | 1.51 | 86357 | 9719 | 50 | 418 | 19 | 0 | 0 | logfile |
✔ | 8EAU | 27986 | 2024-04-11 | 2022-08-29 | 3.1 | 3.32 | 3.11 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 12.72 | 0.00 | 2.097 | 9.07 | 0.00 | 1.7 | 98.3 | 0.0 | 1.07 | 0.67 | 0.82 | 3.62 | 3.3 | 0.004 | 0.58 | 0.0 | 0.04 | 14.82 | 0.00 | 2.086 | 9.03 | 2.32 | 1.7 | 98.3 | 0.0 | 1.58 | 1.52 | 0.68 | 0.85 | 2.82 | 21909 | 2946 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JiC | 22344 | 2024-04-05 | 2020-07-23 | 3.8 | 4.28 | 3.86 | 4.1 | 0.002 | 0.45 | 0.0 | 0.04 | 9.26 | 0.00 | 2.241 | 5.66 | 0.00 | 4.4 | 95.6 | 0.0 | -1.97 | 0.68 | 0.80 | 2.30 | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 14.14 | 0.00 | 2.236 | 9.11 | 2.43 | 3.0 | 96.9 | 0.1 | 0.53 | 1.99 | 0.68 | 0.81 | 2.27 | 5980 | 842 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LMT | 0919 | 2024-04-09 | 2019-12-26 | 2.66 | 2.77 | 2.50 | 2.7 | 0.012 | 1.14 | 0.0 | 0.06 | 11.69 | 0.01 | 2.409 | 4.14 | 0.00 | 2.4 | 97.6 | 0.0 | -4.48 | 0.52 | 0.75 | 5.03 | 2.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.58 | 0.00 | 2.267 | 11.92 | 1.45 | 1.6 | 98.4 | 0.0 | 2.68 | 1.30 | 0.69 | 0.88 | 3.08 | 17552 | 2032 | 16 | 0 | 32 | 0 | 0 | logfile |
✔ | 7ZR6 | 14884 | 2024-04-09 | 2022-05-03 | 4.2 | 2.74 | 4.56 | 3.4 | 0.003 | 0.79 | 0.0 | 0.05 | 14.74 | 0.00 | 2.106 | 16.41 | 0.00 | 7.7 | 92.0 | 0.3 | -1.90 | 0.65 | 0.64 | — | 2.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.94 | 0.01 | 2.128 | 12.84 | 0.00 | 8.4 | 91.4 | 0.2 | -1.64 | 1.09 | 0.69 | 0.63 | — | 17700 | 2168 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 7WRL | 32732 | 2024-04-05 | 2022-01-27 | 3.51 | 3.69 | — | 3.6 | 0.006 | 1.03 | 0.0 | 0.06 | 14.71 | 0.01 | 2.289 | 5.84 | 0.00 | 13.4 | 86.6 | 0.0 | -4.19 | 0.64 | 0.78 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3251 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VTK | 21380 | 2024-04-07 | 2020-02-12 | 2.82 | 3.35 | — | 3.3 | 0.005 | 0.82 | 0.0 | 0.05 | 9.13 | 0.01 | 2.287 | 3.10 | 0.00 | 3.2 | 96.8 | 0.0 | -4.44 | 0.71 | 0.81 | 4.37 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 13.93 | 0.00 | 2.252 | 6.44 | 1.50 | 1.9 | 98.1 | 0.0 | -0.14 | 1.20 | 0.70 | 0.83 | 3.83 | 10686 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7L8A | 23227 | 2024-04-09 | 2020-12-31 | 3.3 | 3.46 | 3.34 | 3.4 | 0.023 | 1.69 | 1.0 | 0.15 | 10.98 | 0.01 | 2.195 | 1.36 | 0.00 | 1.8 | 98.2 | 0.0 | 0.68 | 0.74 | 0.86 | 4.33 | 3.4 | 0.004 | 0.60 | 0.0 | 0.04 | 12.86 | 0.00 | 2.165 | 4.97 | 2.47 | 2.6 | 97.4 | 0.0 | -0.19 | 1.59 | 0.72 | 0.87 | 3.55 | 15728 | 1687 | 47 | 0 | 317 | 0 | 0 | logfile |