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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EFB | 28077 | 2024-04-06 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7E8C | 31014 | 2024-04-16 | 2021-03-01 | 3.16 | 2.56 | 3.11 | 2.5 | 0.006 | 0.98 | 3.0 | 0.06 | 16.36 | 0.01 | 1.508 | 13.70 | 9.23 | 7.7 | 92.0 | 0.3 | -1.93 | 0.71 | 0.70 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40225 | 5218 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SBF | 24978 | 2024-04-06 | 2021-09-24 | 2.9 | 3.28 | — | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 12.82 | 0.00 | 2.200 | 7.87 | 0.23 | 3.8 | 96.1 | 0.1 | -0.02 | 0.75 | 0.82 | 3.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8525 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6M5U | 30093 | 2024-04-07 | 2020-03-11 | 3.8 | 3.78 | — | 3.8 | 0.007 | 0.86 | 1.0 | 0.05 | 16.07 | 0.00 | 2.210 | 18.52 | 5.59 | 9.0 | 90.8 | 0.2 | -3.03 | 0.62 | 0.81 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10549 | 1359 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7MUE | 24006 | 2024-04-16 | 2021-05-14 | 2.8 | 2.99 | — | 2.9 | 0.004 | 0.78 | 0.0 | 0.05 | 13.97 | 0.01 | 2.345 | 1.38 | 0.00 | 3.1 | 96.9 | 0.0 | -1.29 | 0.83 | 0.88 | 3.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40266 | 4626 | 72 | 0 | 864 | 0 | 0 | logfile |
✘ | 5XTC | 6772 | 2024-04-16 | 2017-06-19 | 3.7 | 3.85 | — | 3.7 | 0.014 | 1.55 | 1.0 | 0.07 | 13.90 | 0.01 | 1.049 | 26.41 | 1.20 | 6.4 | 90.9 | 2.8 | -1.64 | 0.74 | 0.82 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38835 | 4701 | 40 | 0 | 19 | 0 | 0 | logfile |
✘ | 7WSi | 32759 | 2024-04-05 | 2022-01-29 | 3.32 | 3.90 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 12.25 | 0.00 | 2.122 | 8.82 | 0.00 | 7.9 | 92.1 | 0.0 | -0.23 | 0.66 | 0.77 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5701 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E0K | 30935 | 2024-04-06 | 2021-01-28 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8044 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 5NV3 | 3699 | 2024-04-16 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.22 | 2.0 | 0.07 | 14.59 | 0.00 | 2.164 | 2.84 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |
✘ | 6BQ1 | 7129 | 2024-04-16 | 2017-11-27 | 3.6 | 3.71 | — | 3.6 | 0.007 | 0.95 | 6.0 | 0.05 | 9.33 | 0.01 | 1.899 | 27.65 | 0.11 | 5.2 | 94.8 | 0.0 | -3.86 | 0.60 | 0.49 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37163 | 4050 | 8 | 0 | 955 | 0 | 0 | logfile |
✘ | 7BP9 | 30148 | 2024-04-15 | 2020-03-21 | 3.6 | 3.66 | — | 3.6 | 0.009 | 1.26 | 0.0 | 0.08 | 14.69 | 0.01 | 2.215 | 9.40 | 0.47 | 5.0 | 94.8 | 0.1 | -3.34 | 0.78 | 0.78 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35214 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7BP8 | 30147 | 2024-04-15 | 2020-03-21 | 3.9 | 4.00 | — | 3.9 | 0.008 | 1.38 | 0.0 | 0.08 | 15.25 | 0.01 | 2.313 | 5.30 | 0.18 | 5.3 | 94.7 | 0.0 | -3.18 | 0.80 | 0.80 | 1.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35190 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2024-04-09 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 11.99 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 7E2Y | 30972 | 2024-04-06 | 2021-02-07 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6987 | 868 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6S0Z | 10077 | 2024-04-17 | 2019-06-18 | 2.3 | 2.39 | — | 2.4 | 0.006 | 0.80 | 0.0 | 0.06 | 23.76 | 0.00 | 2.007 | 2.91 | 6.96 | 7.1 | 92.8 | 0.0 | -2.89 | 0.62 | 0.73 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145796 | 3106 | 31 | 3019 | 1 | 0 | 57218 | logfile |
✘ | 6BAJ | 7074 | 2024-04-12 | 2017-10-13 | 3.2 | 3.67 | — | 3.6 | 0.008 | 1.40 | 0.0 | 0.06 | 16.65 | 0.01 | 2.131 | 6.76 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.60 | 0.79 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✘ | 6R91 | 4765 | 2024-04-16 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.87 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |
✘ | 5XNN | 6743 | 2024-04-07 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 7MHS | 23835 | 2024-04-11 | 2021-04-15 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21148 | 2652 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 7D5i | 30582 | 2024-04-05 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |