Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HJ4	34832	2023-04-22	2022-11-22	3.1	3.53	3.17	3.4	0.003	0.60	0.0	0.04	15.16	0.00	2.211	12.99	0.73	6.9	92.9	0.3	-1.12	0.78	0.73	2.10	3.4	0.005	0.66	0.0	0.04	16.40	0.00	2.173	14.98	0.31	7.2	92.8	0.0	-0.85	0.47	0.80	0.78	1.83	11652	1163	3	113	0	0	0	logfile
✔	8HJ3	34831	2023-04-20	2022-11-22	3.29	3.43	3.19	3.3	0.005	0.80	0.0	0.05	14.92	0.01	2.200	16.79	0.30	3.6	96.4	0.0	1.21	0.46	0.76	2.55	3.3	0.004	0.65	0.0	0.04	16.20	0.00	2.165	16.79	0.30	3.4	96.6	0.0	0.77	0.38	0.47	0.79	2.05	3274	416	1	0	1	0	0	logfile
✔	8HJ2	33481	2023-04-20	2022-11-22	3.8	3.53	3.77	3.5	0.007	1.20	0.0	0.07	13.41	0.01	2.242	5.80	0.00	4.9	95.1	0.0	-2.19	0.59	0.75	1.57	3.5	0.004	0.70	0.0	0.04	15.51	0.00	2.177	13.44	0.72	4.8	95.2	0.0	0.67	0.53	0.58	0.74	1.04	7467	1027	5	0	0	0	0	logfile
✔	8HJ0	33482	2023-04-20	2022-11-22	3.12	2.73	3.10	2.8	0.006	1.07	0.0	0.06	14.89	0.01	2.254	6.47	0.00	4.6	95.4	0.0	-1.89	0.52	0.66	2.34	2.8	0.003	0.63	0.0	0.04	16.56	0.00	2.172	12.52	0.44	3.9	96.1	0.0	0.41	0.43	0.52	0.68	1.74	8260	1043	5	0	0	0	0	logfile
✔	8HiZ	34830	2023-04-20	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile
✔	8HiX	33480	2023-04-20	2022-11-22	3.12	2.87	3.08	3.0	0.006	0.94	0.0	0.06	15.23	0.01	2.178	6.64	0.00	4.1	95.9	0.0	-1.52	0.55	0.70	2.46	3.0	0.003	0.57	0.0	0.04	16.67	0.00	2.130	11.27	0.11	3.3	96.7	0.0	0.72	0.39	0.54	0.72	2.04	8274	1043	5	0	0	0	0	logfile
✔	8HiQ	34826	2023-04-20	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	15.96	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.58	0.0	0.04	16.76	0.01	2.272	14.79	0.00	3.6	96.4	0.0	1.72	1.06	0.43	0.78	2.24	3274	416	1	0	1	0	0	logfile
✔	8HiM	34821	2023-04-26	2022-11-21	2.8	2.61	2.87	2.6	0.008	0.99	1.0	0.06	17.20	0.01	2.173	6.40	0.60	5.7	94.2	0.1	-3.49	0.73	0.83	3.18	2.6	0.003	0.61	0.0	0.04	18.65	0.00	2.096	7.63	2.26	5.1	94.9	0.0	-0.52	1.23	0.73	0.85	2.68	23948	2849	18	63	7	0	0	logfile
✔	8HiL	34820	2023-04-26	2022-11-20	3.57	3.29	3.64	3.2	0.007	1.12	0.0	0.06	11.20	0.01	2.105	6.12	1.12	13.3	86.4	0.3	-4.62	0.82	0.79	2.26	3.1	0.003	0.67	0.0	0.04	14.51	0.00	1.728	10.27	0.04	11.7	88.3	0.0	-1.91	1.26	0.83	0.79	1.59	23134	2914	15	0	7	0	0	logfile
✔	8HiK	34819	2023-04-20	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.44	0.01	2.282	4.81	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	2.2	0.005	0.78	0.0	0.04	14.64	0.00	2.107	18.03	0.56	7.5	92.5	0.0	-1.02	0.81	0.69	0.67	1.60	8238	1055	5	0	1	0	0	logfile
✔	8HiJ	34818	2023-04-20	2022-11-20	3.54	2.56	3.51	3.0	0.004	0.72	1.0	0.05	9.56	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	3.0	0.003	0.72	1.0	0.04	14.39	0.00	2.029	12.48	0.22	5.0	95.0	0.0	-0.82	1.33	0.72	0.71	2.04	8245	1055	5	0	1	0	0	logfile
✔	8Hii	34817	2023-04-20	2022-11-20	3.57	2.49	3.54	3.0	0.004	0.80	0.0	0.05	9.45	0.01	2.260	3.48	0.00	5.4	94.6	0.0	-3.43	0.72	0.70	2.19	3.3	0.003	0.69	0.0	0.04	14.41	0.00	2.106	11.66	0.34	4.3	95.7	0.0	0.29	1.65	0.73	0.72	1.61	8212	1055	4	0	0	0	0	logfile
✔	8HHY	34807	2023-04-28	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.69	0.0	0.05	13.81	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.003	0.64	0.0	0.04	16.08	0.00	2.079	14.07	2.11	4.7	95.3	0.0	-1.60	0.41	0.60	0.61	1.59	27420	3483	16	0	32	0	0	logfile
✔	8HHX	34806	2023-04-28	2022-11-17	3.62	3.70	3.71	3.6	0.004	0.64	0.0	0.05	13.16	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.003	0.70	0.0	0.05	15.54	0.00	2.050	15.02	0.27	7.2	92.8	0.0	-1.84	0.49	0.46	0.61	0.93	27435	3477	17	0	35	0	0	logfile
✔	8HHo	34805	2023-04-20	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	14.81	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.003	0.61	0.0	0.04	16.30	0.00	2.139	14.64	0.30	2.2	97.8	0.0	1.41	0.39	0.47	0.80	1.96	3274	416	1	0	1	0	0	logfile
✔	8HGS	34746	2023-04-25	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	8.45	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.89	0.0	0.05	14.70	0.00	2.142	13.72	0.54	9.0	90.7	0.2	-1.68	1.48	0.71	0.70	2.42	10080	1280	8	0	12	0	0	logfile
✔	8HGP	34745	2023-04-21	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✘	8HGo	34744	2023-04-21	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✔	8HGH	34739	2023-04-27	2022-11-14	4.16	3.79	4.05	3.7	0.003	0.62	2.0	0.05	12.05	0.01	2.298	3.92	5.83	3.4	96.6	0.0	-1.78	0.76	0.69	—	3.7	0.003	0.64	0.0	0.04	12.54	0.00	2.120	11.31	0.00	3.5	96.5	0.0	-0.79	0.95	0.78	0.72	—	25512	3266	6	0	2	0	0	logfile
✔	8HGG	34738	2023-04-27	2022-11-14	3.64	3.02	3.51	3.5	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.003	0.57	0.0	0.04	14.32	0.00	2.112	8.48	0.18	4.8	95.2	0.0	-0.86	0.62	0.68	0.70	2.22	25404	3238	6	0	2	0	0	logfile

• ← previous
• Page 2 of 372
• next →