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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7ZRZ | 14923 | 2024-03-11 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6XZR | 10666 | 2024-03-13 | 2020-02-05 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7SPi | 24771 | 2024-03-11 | 2021-11-02 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6XZP | 10664 | 2024-03-13 | 2020-02-05 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HL2 | 34867 | 2024-03-10 | 2022-11-28 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6TU7 | 10590 | 2024-03-19 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7Z37 | 14472 | 2024-03-16 | 2022-03-01 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6ZJi | 11234 | 2024-03-15 | 2020-06-29 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HKV | 34861 | 2024-03-21 | 2022-11-28 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6oJ3 | 20086 | 2024-03-25 | 2019-04-10 | 4.5 | 4.52 | 4.52 | 4.5 | 0.010 | 1.29 | 0.0 | 0.07 | 10.21 | 0.01 | 2.062 | 3.55 | 0.01 | 9.0 | 91.0 | 0.0 | -3.41 | 0.63 | 0.73 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 13.81 | 0.01 | 1.822 | 15.77 | 0.04 | 7.6 | 92.4 | 0.0 | -1.24 | 2.16 | 0.66 | 0.78 | — | 148557 | 9072 | 11 | 0 | 0 | 0 | 74462 | logfile |
✔ | 6oJ4 | 20087 | 2024-03-25 | 2019-04-10 | 3.3 | 3.39 | 3.34 | 3.3 | 0.011 | 0.90 | 0.0 | 0.05 | 10.20 | 0.01 | 2.007 | 3.88 | 0.01 | 9.3 | 90.7 | 0.0 | -3.56 | 0.71 | 0.83 | 4.12 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.45 | 0.00 | 1.899 | 7.75 | 1.55 | 6.5 | 93.5 | 0.0 | -0.06 | 1.73 | 0.70 | 0.86 | 3.27 | 148556 | 9072 | 11 | 0 | 0 | 0 | 74461 | logfile |
✔ | 6oJ6 | 20089 | 2024-03-25 | 2019-04-10 | 4.2 | 4.24 | 4.28 | 4.2 | 0.010 | 1.26 | 2.0 | 0.06 | 10.77 | 0.01 | 2.060 | 3.08 | 0.01 | 9.2 | 90.7 | 0.1 | -3.44 | 0.64 | 0.75 | — | 4.2 | 0.004 | 0.66 | 0.0 | 0.04 | 14.02 | 0.00 | 1.829 | 12.81 | 0.02 | 8.4 | 91.6 | 0.0 | -0.95 | 1.23 | 0.65 | 0.80 | — | 148661 | 9030 | 13 | 24 | 0 | 0 | 74396 | logfile |
✔ | 6GSi | 0056 | 2024-03-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 13.34 | 0.00 | 1.865 | 11.53 | 1.50 | 9.4 | 90.5 | 0.1 | -2.58 | 0.94 | 0.57 | 0.84 | 2.80 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✔ | 6YL3 | 10835 | 2024-03-27 | 2020-04-06 | 1.98 | 2.04 | 1.99 | 2.0 | 0.067 | 3.60 | 246.0 | 0.36 | 16.31 | 0.02 | 1.877 | 4.50 | 2.74 | 5.3 | 94.4 | 0.4 | -2.46 | 0.78 | 0.83 | 6.40 | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 16.13 | 0.01 | 1.767 | 5.13 | 1.70 | 3.8 | 96.0 | 0.1 | -0.04 | 0.82 | 0.81 | 0.86 | 6.97 | 150156 | 9552 | 84 | 0 | 24 | 3672 | 73044 | logfile |
✔ | 8TKF | 41349 | 2024-03-24 | 2023-07-25 | 3.2 | 2.48 | — | 3.1 | 0.002 | 0.79 | 0.0 | 0.03 | 11.62 | 0.00 | 2.056 | 3.94 | 0.44 | 2.0 | 98.0 | 0.0 | 3.77 | 0.72 | 0.81 | 2.97 | 3.1 | 0.003 | 0.46 | 0.0 | 0.03 | 13.99 | 0.00 | 2.025 | 5.55 | 1.21 | 2.5 | 97.5 | 0.0 | 2.79 | 0.79 | 0.77 | 0.85 | 3.44 | 147076 | 9088 | 8 | 0 | 36 | 0 | 72976 | logfile |
✔ | 8TKi | 41352 | 2024-03-22 | 2023-07-25 | 3.6 | 4.33 | 3.84 | 3.9 | 0.002 | 0.47 | 0.0 | 0.04 | 16.76 | 0.00 | 0.845 | 19.42 | 0.07 | 1.6 | 98.4 | 0.0 | 2.93 | 0.77 | 0.65 | 1.27 | 3.9 | 0.007 | 0.66 | 0.0 | 0.04 | 16.22 | 0.00 | 1.746 | 13.84 | 1.98 | 4.4 | 95.6 | 0.0 | 1.52 | 1.45 | 0.85 | 0.82 | 1.45 | 145816 | 9072 | 8 | 0 | 12 | 0 | 72844 | logfile |
✔ | 8TKH | 41351 | 2024-03-22 | 2023-07-25 | 3.5 | 4.26 | 3.69 | 3.9 | 0.002 | 0.44 | 0.0 | 0.04 | 15.91 | 0.00 | 0.530 | 13.82 | 0.09 | 1.3 | 98.7 | 0.0 | 3.61 | 0.80 | 0.74 | 1.44 | 3.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.62 | 0.00 | 1.887 | 10.39 | 1.99 | 2.7 | 97.3 | 0.0 | 2.38 | 2.06 | 0.83 | 0.84 | 1.39 | 145816 | 9072 | 8 | 0 | 12 | 0 | 72844 | logfile |
✔ | 8TK8 | 41323 | 2024-03-25 | 2023-07-25 | 2.7 | 2.30 | — | 2.8 | 0.002 | 0.41 | 0.0 | 0.03 | 12.27 | 0.00 | 1.679 | 2.77 | 0.69 | 2.0 | 98.0 | 0.0 | 3.26 | 0.75 | 0.80 | 3.11 | 2.8 | 0.004 | 0.51 | 0.0 | 0.04 | 15.16 | 0.00 | 1.493 | 5.02 | 1.37 | 2.7 | 97.3 | 0.0 | 2.30 | 0.67 | 0.77 | 0.84 | 3.50 | 146910 | 9072 | 8 | 0 | 36 | 0 | 72830 | logfile |
✔ | 8TKE | 41348 | 2024-03-21 | 2023-07-25 | 3.6 | 2.58 | — | 3.5 | 0.002 | 0.46 | 0.0 | 0.03 | 16.85 | 0.00 | 1.947 | 5.36 | 0.13 | 1.4 | 98.6 | 0.0 | 3.69 | 0.71 | 0.73 | 1.81 | 3.5 | 0.013 | 0.77 | 1.0 | 0.04 | 16.63 | 0.00 | 1.716 | 9.94 | 2.07 | 3.2 | 96.8 | 0.0 | 2.45 | 0.60 | 0.73 | 0.78 | 2.50 | 144372 | 8996 | 8 | 0 | 16 | 0 | 72052 | logfile |
✔ | 8TKD | 41347 | 2024-03-21 | 2023-07-25 | 3.7 | 2.74 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 16.64 | 0.00 | 2.042 | 6.60 | 0.26 | 1.8 | 98.2 | 0.0 | 2.98 | 0.70 | 0.74 | 1.30 | 3.7 | 0.003 | 0.52 | 0.0 | 0.03 | 16.25 | 0.00 | 1.996 | 8.83 | 1.30 | 2.1 | 97.8 | 0.0 | 2.84 | 0.60 | 0.71 | 0.75 | 1.62 | 144368 | 8996 | 8 | 0 | 12 | 0 | 72052 | logfile |