Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7JQB	22432	2021-08-11	2020-08-10	2.7	3.10	—	3.0	0.007	0.83	0.0	0.05	16.30	0.01	2.217	6.43	0.36	6.9	93.0	0.1	-4.40	0.70	0.73	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74976	4859	34	1697	0	0	0	logfile
✘	7D65	30589	2021-08-09	2020-09-29	2.94	3.09	—	3.2	0.008	0.94	0.0	0.05	16.49	0.01	2.328	1.94	0.14	4.3	95.7	0.0	-7.00	0.66	0.81	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✘	7A01	11590	2021-08-20	2020-08-05	3.6	4.04	—	3.9	0.007	0.94	0.0	0.05	18.48	0.01	1.639	25.86	0.04	14.5	85.3	0.2	-3.57	0.69	0.74	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	224880	11858	91	6055	6	0	0	logfile
✘	6PLU	20376	2021-08-08	2019-07-01	3.3	3.44	—	3.4	0.009	0.96	0.0	0.06	8.84	0.01	1.256	5.28	0.00	3.2	96.8	0.0	-4.81	0.66	0.82	4.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14665	1720	15	0	80	0	0	logfile
✘	7K1K	22625	2021-08-11	2020-09-07	4.1	4.21	—	4.1	0.008	1.12	0.0	0.06	17.45	0.01	2.224	7.18	0.91	14.0	85.5	0.4	-5.07	0.73	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38243	4620	7	74	0	0	0	logfile
✘	6WKX	21812	2021-08-08	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12915	1575	105	0	0	0	0	logfile
✘	6YEZ	10798	2021-08-11	2020-03-25	2.7	3.21	2.66	3.1	0.025	2.90	6.0	0.13	22.85	0.02	1.193	30.64	0.64	5.2	94.5	0.3	-1.96	0.77	0.87	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39226	3438	35	0	244	2	0	logfile
✘	6PLS	20374	2021-08-08	2019-07-01	3.0	3.13	—	3.1	0.008	0.99	0.0	0.06	8.87	0.01	1.445	4.80	0.00	2.6	97.4	0.0	-4.00	0.71	0.85	5.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14610	1720	15	0	75	0	0	logfile
✘	6M23	30061	2021-08-08	2020-02-26	3.2	3.49	—	3.3	0.010	1.09	0.0	0.07	15.14	0.01	2.216	7.63	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14744	1872	12	0	18	2	0	logfile
✘	7JRP	22448	2021-08-11	2020-08-12	3.8	3.87	—	3.9	0.009	0.91	0.0	0.20	14.95	0.01	1.282	11.65	0.11	7.4	92.5	0.1	0.07	0.61	0.85	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45166	5472	46	0	57	0	0	logfile
✘	6PLR	20373	2021-08-08	2019-07-01	3.2	3.44	—	3.4	0.007	0.91	0.0	0.05	8.74	0.01	1.522	4.45	0.00	3.8	96.2	0.0	-4.64	0.64	0.81	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14685	1735	15	0	75	0	0	logfile
✘	6YAC	10746	2021-08-11	2020-03-12	2.5	2.57	—	2.5	0.025	2.88	2.0	0.12	23.31	0.02	1.192	16.49	0.48	6.3	93.5	0.2	-2.59	0.72	0.84	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38469	3332	45	0	243	56	0	logfile
✘	7JMN	22397	2021-08-08	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	10.55	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13633	1756	5	0	52	0	0	logfile
✘	6YP7	10865	2021-08-10	2020-04-15	3.8	4.64	—	3.8	0.013	0.80	0.0	0.04	14.72	0.01	0.864	21.67	2.15	4.8	95.2	0.0	-1.92	0.80	0.83	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71784	7002	77	0	325	0	0	logfile
✘	7L09	23097	2021-08-11	2020-12-11	3.1	3.71	—	3.5	0.014	1.54	4.0	0.10	11.84	0.01	2.369	1.20	0.76	3.3	96.7	0.0	-0.26	0.77	0.74	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44124	3776	23	0	70	0	13841	logfile
✘	7BP0	30138	2021-08-11	2020-03-20	4.6	4.05	—	4.2	0.014	2.50	229.0	0.17	20.41	0.02	1.115	148.19	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41388	5244	12	0	0	0	0	logfile
✘	6X43	22039	2021-08-10	2020-05-22	3.6	3.68	—	3.6	0.010	1.02	0.0	0.06	16.79	0.01	1.966	10.22	0.17	9.1	90.7	0.2	-2.48	0.77	0.84	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36055	4316	11	111	5	0	0	logfile
✘	7AGG	11779	2021-08-07	2020-09-22	3.3	3.68	—	3.6	0.007	0.79	0.0	0.05	13.16	0.01	1.980	6.95	0.00	4.2	95.8	0.0	-1.18	0.83	0.80	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8252	1056	5	0	0	0	0	logfile
✘	7JZU	22574	2021-08-07	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.52	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1987	248	3	0	3	0	0	logfile
✘	7BC4	12138	2021-08-09	2020-12-18	3.1	2.99	2.99	3.0	0.008	0.88	1.0	0.06	15.49	0.01	2.285	5.35	1.19	6.4	93.6	0.0	-5.07	0.51	0.85	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27610	3514	2	0	1	0	0	logfile

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