Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6oPC	20149	2022-07-06	2019-04-24	3.7	4.08	—	3.7	0.006	1.06	4.0	0.06	14.45	0.01	1.515	5.03	0.09	8.2	91.1	0.7	-4.20	0.79	0.71	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30015	4455	13	0	48	0	0	logfile
✘	3J5R	5777	2022-07-04	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✘	6NT3	0500	2022-07-03	2019-01-28	3.4	3.96	3.65	3.9	0.008	1.11	0.0	0.12	16.57	0.01	1.308	11.42	0.53	13.2	86.3	0.5	-4.75	0.50	0.79	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10934	1278	1	0	20	0	0	logfile
✘	6NT4	0501	2022-07-03	2019-01-28	3.5	4.11	3.77	4.0	0.006	1.07	1.0	0.13	16.47	0.00	1.319	12.94	0.64	12.9	86.7	0.4	-4.72	0.51	0.76	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	4	0	20	0	0	logfile
✘	6oF4	20042	2022-07-03	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.85	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10998	1422	4	0	0	0	0	logfile
✘	6KPG	0745	2022-07-03	2019-08-15	3.0	3.46	—	3.4	0.012	1.06	0.0	0.06	14.30	0.01	1.202	7.99	0.74	7.4	92.5	0.1	-5.14	0.65	0.79	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8805	1135	6	0	1	0	0	logfile
✘	6NWA	0524	2022-07-06	2019-02-06	3.48	3.70	—	3.6	0.006	1.04	0.0	0.06	20.04	0.02	1.223	8.20	0.28	4.1	95.9	0.0	-4.64	0.75	0.82	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137509	12666	96	0	771	0	0	logfile
✘	6Y1Z	10673	2022-07-04	2020-02-14	2.82	3.48	—	3.3	0.002	0.47	0.0	0.04	13.28	0.00	1.216	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16610	1930	10	0	35	0	0	logfile
✘	6R9B	4769	2022-07-05	2019-04-03	3.8	3.76	—	3.6	0.003	0.88	1.0	0.06	9.76	0.01	2.296	4.87	0.70	8.0	91.8	0.2	-4.57	0.63	0.51	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25880	3401	7	0	0	0	0	logfile
✘	6JND	9848	2022-07-03	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	4.09	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3294	419	1	0	1	0	0	logfile
✘	6oF3	20041	2022-07-03	2019-03-28	3.0	2.82	—	3.7	0.008	1.59	2.0	0.08	14.70	0.01	2.058	3.96	0.85	16.1	81.9	2.0	-4.36	0.70	0.65	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11096	1430	6	0	4	0	0	logfile
✘	6HiN	0225	2022-07-04	2018-08-30	4.1	4.24	—	4.2	0.009	1.15	0.0	0.07	11.82	0.01	1.347	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	10	0	30	0	0	logfile
✘	6C9A	7435	2022-07-03	2018-01-25	3.2	3.34	—	3.3	0.009	1.04	0.0	0.06	10.18	0.01	1.176	2.82	0.00	5.0	95.0	0.0	-4.37	0.59	0.82	3.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12182	1446	4	0	8	0	0	logfile
✘	6K32	9907	2022-07-03	2019-05-16	3.2	3.73	—	3.8	0.008	1.13	1.0	0.07	11.31	0.01	0.964	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61364	7723	10	8	6	0	0	logfile
✘	6Q0J	20550	2022-07-03	2019-08-01	4.9	4.69	—	4.1	0.012	1.51	3.0	0.09	7.93	0.00	1.185	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8213	1633	8	0	6	0	0	logfile
✘	5TR1	8454	2022-07-03	2016-10-25	3.95	2.78	—	3.8	0.008	1.54	44.0	0.09	12.85	0.01	2.107	5.25	2.23	4.6	95.2	0.2	-0.26	0.65	0.69	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12678	1648	8	0	2	0	0	logfile
✘	5T5H	8361	2022-07-07	2016-08-31	2.54	2.84	—	2.9	0.013	1.29	1.0	0.06	16.26	0.01	0.838	36.92	0.69	5.4	93.4	1.2	-2.36	0.64	0.82	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105112	5369	74	2884	108	83	0	logfile
✘	6NQ2	0479	2022-07-03	2019-01-18	3.4	3.50	—	3.5	0.009	0.94	0.0	0.06	14.40	0.01	1.185	3.85	0.36	5.1	94.9	0.0	-5.59	0.58	0.83	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	6CNA	7529	2022-07-05	2018-03-07	4.6	5.89	—	5.8	0.006	0.91	0.0	0.05	10.19	0.01	2.021	26.64	0.00	9.7	90.1	0.3	-4.80	0.57	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	3160	8	0	22	0	0	logfile
✘	6oRL	20174	2022-07-08	2019-04-30	3.5	4.53	—	3.4	0.009	0.87	0.0	0.05	15.63	0.01	1.173	11.01	0.33	6.0	93.9	0.1	-3.76	0.91	0.87	1.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146039	5890	62	4642	296	0	0	logfile

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