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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6oPC | 20149 | 2022-07-06 | 2019-04-24 | 3.7 | 4.08 | — | 3.7 | 0.006 | 1.06 | 4.0 | 0.06 | 14.45 | 0.01 | 1.515 | 5.03 | 0.09 | 8.2 | 91.1 | 0.7 | -4.20 | 0.79 | 0.71 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30015 | 4455 | 13 | 0 | 48 | 0 | 0 | logfile |
✘ | 3J5R | 5777 | 2022-07-04 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.60 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 6NT3 | 0500 | 2022-07-03 | 2019-01-28 | 3.4 | 3.96 | 3.65 | 3.9 | 0.008 | 1.11 | 0.0 | 0.12 | 16.57 | 0.01 | 1.308 | 11.42 | 0.53 | 13.2 | 86.3 | 0.5 | -4.75 | 0.50 | 0.79 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10934 | 1278 | 1 | 0 | 20 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2022-07-03 | 2019-01-28 | 3.5 | 4.11 | 3.77 | 4.0 | 0.006 | 1.07 | 1.0 | 0.13 | 16.47 | 0.00 | 1.319 | 12.94 | 0.64 | 12.9 | 86.7 | 0.4 | -4.72 | 0.51 | 0.76 | 1.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 4 | 0 | 20 | 0 | 0 | logfile |
✘ | 6oF4 | 20042 | 2022-07-03 | 2019-03-28 | 3.2 | 2.71 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.06 | 15.12 | 0.01 | 2.091 | 11.85 | 2.54 | 19.6 | 76.8 | 3.5 | -4.99 | 0.79 | 0.82 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10998 | 1422 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KPG | 0745 | 2022-07-03 | 2019-08-15 | 3.0 | 3.46 | — | 3.4 | 0.012 | 1.06 | 0.0 | 0.06 | 14.30 | 0.01 | 1.202 | 7.99 | 0.74 | 7.4 | 92.5 | 0.1 | -5.14 | 0.65 | 0.79 | 3.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8805 | 1135 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6NWA | 0524 | 2022-07-06 | 2019-02-06 | 3.48 | 3.70 | — | 3.6 | 0.006 | 1.04 | 0.0 | 0.06 | 20.04 | 0.02 | 1.223 | 8.20 | 0.28 | 4.1 | 95.9 | 0.0 | -4.64 | 0.75 | 0.82 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137509 | 12666 | 96 | 0 | 771 | 0 | 0 | logfile |
✘ | 6Y1Z | 10673 | 2022-07-04 | 2020-02-14 | 2.82 | 3.48 | — | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 13.28 | 0.00 | 1.216 | 3.51 | 2.49 | 2.4 | 97.6 | 0.0 | -1.37 | 0.66 | 0.79 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16610 | 1930 | 10 | 0 | 35 | 0 | 0 | logfile |
✘ | 6R9B | 4769 | 2022-07-05 | 2019-04-03 | 3.8 | 3.76 | — | 3.6 | 0.003 | 0.88 | 1.0 | 0.06 | 9.76 | 0.01 | 2.296 | 4.87 | 0.70 | 8.0 | 91.8 | 0.2 | -4.57 | 0.63 | 0.51 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25880 | 3401 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JND | 9848 | 2022-07-03 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 4.09 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6oF3 | 20041 | 2022-07-03 | 2019-03-28 | 3.0 | 2.82 | — | 3.7 | 0.008 | 1.59 | 2.0 | 0.08 | 14.70 | 0.01 | 2.058 | 3.96 | 0.85 | 16.1 | 81.9 | 2.0 | -4.36 | 0.70 | 0.65 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11096 | 1430 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 6HiN | 0225 | 2022-07-04 | 2018-08-30 | 4.1 | 4.24 | — | 4.2 | 0.009 | 1.15 | 0.0 | 0.07 | 11.82 | 0.01 | 1.347 | 6.61 | 0.32 | 1.5 | 98.5 | 0.0 | -4.98 | 0.81 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14220 | 1675 | 10 | 0 | 30 | 0 | 0 | logfile |
✘ | 6C9A | 7435 | 2022-07-03 | 2018-01-25 | 3.2 | 3.34 | — | 3.3 | 0.009 | 1.04 | 0.0 | 0.06 | 10.18 | 0.01 | 1.176 | 2.82 | 0.00 | 5.0 | 95.0 | 0.0 | -4.37 | 0.59 | 0.82 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12182 | 1446 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 6K32 | 9907 | 2022-07-03 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.008 | 1.13 | 1.0 | 0.07 | 11.31 | 0.01 | 0.964 | 10.28 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✘ | 6Q0J | 20550 | 2022-07-03 | 2019-08-01 | 4.9 | 4.69 | — | 4.1 | 0.012 | 1.51 | 3.0 | 0.09 | 7.93 | 0.00 | 1.185 | 2.10 | 0.00 | 5.4 | 93.3 | 1.3 | -2.84 | 0.74 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8213 | 1633 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 5TR1 | 8454 | 2022-07-03 | 2016-10-25 | 3.95 | 2.78 | — | 3.8 | 0.008 | 1.54 | 44.0 | 0.09 | 12.85 | 0.01 | 2.107 | 5.25 | 2.23 | 4.6 | 95.2 | 0.2 | -0.26 | 0.65 | 0.69 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12678 | 1648 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 5T5H | 8361 | 2022-07-07 | 2016-08-31 | 2.54 | 2.84 | — | 2.9 | 0.013 | 1.29 | 1.0 | 0.06 | 16.26 | 0.01 | 0.838 | 36.92 | 0.69 | 5.4 | 93.4 | 1.2 | -2.36 | 0.64 | 0.82 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105112 | 5369 | 74 | 2884 | 108 | 83 | 0 | logfile |
✘ | 6NQ2 | 0479 | 2022-07-03 | 2019-01-18 | 3.4 | 3.50 | — | 3.5 | 0.009 | 0.94 | 0.0 | 0.06 | 14.40 | 0.01 | 1.185 | 3.85 | 0.36 | 5.1 | 94.9 | 0.0 | -5.59 | 0.58 | 0.83 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2022-07-05 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.006 | 0.91 | 0.0 | 0.05 | 10.19 | 0.01 | 2.021 | 26.64 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 8 | 0 | 22 | 0 | 0 | logfile |
✘ | 6oRL | 20174 | 2022-07-08 | 2019-04-30 | 3.5 | 4.53 | — | 3.4 | 0.009 | 0.87 | 0.0 | 0.05 | 15.63 | 0.01 | 1.173 | 11.01 | 0.33 | 6.0 | 93.9 | 0.1 | -3.76 | 0.91 | 0.87 | 1.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 146039 | 5890 | 62 | 4642 | 296 | 0 | 0 | logfile |