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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7D8X | 30614 | 2023-09-30 | 2020-10-11 | 2.6 | 2.78 | — | 2.7 | 0.010 | 1.31 | 0.0 | 0.06 | 11.16 | 0.01 | 2.221 | 3.29 | 0.18 | 5.1 | 94.9 | 0.0 | -3.36 | 0.70 | 0.86 | 4.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10928 | 1314 | 13 | 0 | 28 | 0 | 0 | logfile |
✔ | 7YGB | 33814 | 2023-09-29 | 2022-07-11 | 2.62 | 3.15 | 2.70 | 2.9 | 0.007 | 0.52 | 0.0 | 0.03 | 14.46 | 0.00 | 2.079 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.84 | — | 2.9 | 0.007 | 0.64 | 0.0 | 0.04 | 14.93 | 0.00 | 1.835 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.90 | 0.91 | — | 8738 | 0 | 5 | 407 | 54 | 0 | 0 | logfile |
✔ | 7YGC | 33815 | 2023-09-29 | 2022-07-11 | 2.65 | 3.28 | 2.77 | 2.9 | 0.007 | 0.50 | 0.0 | 0.03 | 14.76 | 0.00 | 1.778 | 12.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.83 | — | 2.9 | 0.004 | 0.59 | 0.0 | 0.03 | 15.59 | 0.00 | 1.931 | 14.86 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.48 | 0.92 | 0.91 | — | 8690 | 0 | 3 | 407 | 6 | 0 | 0 | logfile |
✔ | 7YG8 | 33811 | 2023-09-29 | 2022-07-11 | 2.97 | 3.59 | 3.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 14.91 | 0.00 | 2.042 | 13.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.82 | — | 3.0 | 0.006 | 0.65 | 0.0 | 0.04 | 16.08 | 0.00 | 1.846 | 19.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.91 | 0.89 | — | 8440 | 0 | 3 | 395 | 5 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-09-29 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2023-09-27 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✘ | 6WD0 | 21619 | 2023-09-01 | 2020-03-31 | 3.0 | 3.31 | 3.13 | 3.2 | 0.006 | 0.97 | 0.0 | 0.08 | 13.22 | 0.01 | 2.187 | 7.90 | 0.75 | 10.1 | 87.9 | 2.1 | -4.83 | 0.83 | 0.86 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148592 | 6024 | 58 | 4734 | 0 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2023-09-28 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 15.98 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 6WDF | 21634 | 2023-09-01 | 2020-03-31 | 3.3 | 3.73 | 3.77 | 3.6 | 0.006 | 0.94 | 0.0 | 0.08 | 13.53 | 0.01 | 1.310 | 11.93 | 0.94 | 11.6 | 86.6 | 1.8 | -4.80 | 0.81 | 0.82 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148582 | 6025 | 57 | 4733 | 0 | 0 | 0 | logfile |
✘ | 6WDG | 21635 | 2023-09-01 | 2020-03-31 | 3.3 | 3.73 | 3.80 | 3.6 | 0.006 | 0.96 | 0.0 | 0.08 | 13.54 | 0.01 | 1.303 | 12.77 | 1.02 | 12.2 | 85.8 | 2.0 | -4.96 | 0.81 | 0.83 | 1.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148582 | 6025 | 57 | 4733 | 0 | 0 | 0 | logfile |
✘ | 7URC | 26708 | 2023-09-28 | 2022-04-21 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5561 | 658 | 4 | 0 | 12 | 0 | 0 | logfile |
✘ | 6X1A | 21994 | 2023-09-30 | 2020-05-18 | 2.5 | 1.99 | 2.50 | 2.6 | 0.006 | 0.93 | 0.0 | 0.07 | 15.41 | 0.00 | 2.140 | 14.37 | 3.79 | 3.9 | 96.1 | 0.0 | -3.15 | 0.51 | 0.71 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1262 | 5 | 0 | 1 | 23 | 0 | logfile |
✘ | 7PSL | 13613 | 2023-09-29 | 2021-09-23 | 3.3 | 3.77 | — | 3.7 | 0.006 | 0.65 | 0.0 | 0.04 | 14.91 | 0.00 | 2.258 | 5.27 | 0.00 | 3.9 | 96.1 | 0.0 | -3.04 | 0.61 | 0.76 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9612 | 1200 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8CXN | 27061 | 2023-09-29 | 2022-05-22 | 2.9 | 3.69 | 2.99 | 3.3 | 0.002 | 0.50 | 3.0 | 0.05 | 11.36 | 0.00 | 1.974 | 5.44 | 0.06 | 3.5 | 96.4 | 0.1 | 0.27 | 0.78 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57131 | 3678 | 9 | 0 | 30 | 0 | 27987 | logfile |
✔ | 7YGA | 33813 | 2023-09-29 | 2022-07-11 | 2.35 | 3.08 | 2.44 | 2.8 | 0.008 | 0.62 | 0.0 | 0.04 | 15.23 | 0.01 | 1.779 | 10.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.87 | — | 2.8 | 0.007 | 0.60 | 0.0 | 0.04 | 15.26 | 0.00 | 1.499 | 12.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.17 | 0.89 | 0.88 | — | 8692 | 0 | 3 | 407 | 8 | 0 | 0 | logfile |
✘ | 7RJE | 24486 | 2023-09-29 | 2021-07-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57232 | 3818 | 24 | 0 | 10 | 0 | 27924 | logfile |
✘ | 7T6X | 25730 | 2023-09-29 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 9.71 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 8DLY | 27520 | 2023-09-27 | 2022-07-08 | 3.0 | 3.63 | 2.92 | 3.6 | 0.005 | 0.94 | 0.0 | 0.06 | 12.37 | 0.01 | 2.317 | 1.86 | 0.37 | 3.5 | 96.5 | 0.0 | -1.46 | 0.63 | 0.81 | 3.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2483 | 314 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7UR5 | 26705 | 2023-09-28 | 2022-04-21 | 2.6 | 2.89 | 2.82 | 2.9 | 0.008 | 1.48 | 0.0 | 0.11 | 25.09 | 0.01 | 2.204 | 2.44 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.58 | — | 2.9 | 0.006 | 0.88 | 0.0 | 0.05 | 20.44 | 0.01 | 2.010 | 16.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.86 | 0.08 | 0.66 | — | 5709 | 0 | 3 | 270 | 0 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2023-09-27 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |