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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ZYA | 6915 | 2024-03-17 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.27 | 0.0 | 0.07 | 11.43 | 0.01 | 1.673 | 8.53 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.004 | 0.82 | 0.0 | 0.05 | 15.29 | 0.00 | 2.111 | 18.65 | 3.03 | 7.6 | 92.4 | 0.0 | -2.10 | 1.80 | 0.77 | 0.73 | 0.86 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 7YoT | 33986 | 2024-03-15 | 2022-08-02 | 3.0 | 3.12 | 2.07 | 3.1 | 0.009 | 1.03 | 0.0 | 0.06 | 10.47 | 0.01 | 2.279 | 4.54 | 0.66 | 4.2 | 95.8 | 0.0 | -3.64 | 0.71 | 0.85 | 3.78 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 15.13 | 0.00 | 2.153 | 8.22 | 1.61 | 3.0 | 97.0 | 0.0 | 0.88 | 0.60 | 0.70 | 0.85 | 2.54 | 12182 | 1551 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F75 | 31485 | 2024-03-20 | 2021-06-28 | 4.2 | 4.30 | — | 4.2 | 0.007 | 0.99 | 0.0 | 0.06 | 19.49 | 0.01 | 1.879 | 10.06 | 2.25 | 9.0 | 90.8 | 0.2 | -4.47 | 0.73 | 0.77 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 18.52 | 0.00 | 2.015 | 10.93 | 0.97 | 8.6 | 91.4 | 0.0 | -1.73 | 1.48 | 0.73 | 0.77 | — | 26887 | 3410 | 13 | 122 | 3 | 0 | 0 | logfile |
✔ | 6NF6 | 9361 | 2024-03-11 | 2018-12-18 | 3.32 | 3.42 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 15.52 | 0.01 | 2.309 | 4.98 | 0.00 | 4.5 | 95.2 | 0.3 | -2.74 | 0.54 | 0.79 | 2.76 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.17 | 0.00 | 2.241 | 11.44 | 3.73 | 4.9 | 95.1 | 0.0 | 2.36 | 0.52 | 0.55 | 0.80 | 2.07 | 6598 | 822 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7W57 | 32316 | 2024-03-17 | 2021-11-29 | 3.2 | 3.16 | — | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 11.44 | 0.00 | 1.990 | 3.69 | 0.20 | 2.0 | 98.0 | 0.0 | 0.67 | 0.63 | 0.79 | 3.55 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 14.46 | 0.00 | 1.992 | 6.88 | 1.10 | 3.0 | 97.0 | 0.0 | 1.35 | 1.28 | 0.64 | 0.83 | 3.40 | 18242 | 1159 | 6 | 0 | 0 | 0 | 9072 | logfile |
✔ | 7DWB | 30880 | 2024-03-19 | 2021-01-17 | 3.15 | 3.84 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.194 | 6.72 | 0.00 | 11.0 | 88.7 | 0.2 | -1.95 | 0.58 | 0.74 | 1.74 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.54 | 0.00 | 2.080 | 9.61 | 1.60 | 11.9 | 87.9 | 0.2 | -1.53 | 0.56 | 0.49 | 0.69 | 1.71 | 23464 | 2947 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2024-03-18 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.014 | 0.88 | 0.0 | 0.06 | 14.46 | 0.01 | 2.057 | 2.18 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.002 | 0.60 | 0.0 | 0.04 | 15.86 | 0.00 | 2.208 | 6.82 | 0.95 | 4.5 | 95.5 | 0.0 | -1.15 | 0.55 | 0.70 | 0.84 | 3.07 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 7VLA | 32022 | 2024-03-14 | 2021-10-02 | 2.7 | 2.79 | — | 2.8 | 0.006 | 0.87 | 0.0 | 0.06 | 12.46 | 0.01 | 1.634 | 9.80 | 0.09 | 2.4 | 97.6 | 0.0 | 1.07 | 0.67 | 0.79 | 3.93 | 2.8 | 0.002 | 0.56 | 0.0 | 0.04 | 15.05 | 0.00 | 2.127 | 6.07 | 1.70 | 2.1 | 97.9 | 0.0 | 1.40 | 0.48 | 0.68 | 0.83 | 3.28 | 9675 | 1222 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8A05 | 15048 | 2024-03-10 | 2022-05-26 | 3.4 | 3.47 | 3.11 | 3.5 | 0.002 | 0.43 | 0.0 | 0.05 | 12.67 | 0.00 | 2.328 | 2.02 | 0.00 | 2.2 | 97.8 | 0.0 | 0.42 | 0.37 | 0.84 | 2.71 | 3.5 | 0.002 | 0.46 | 0.0 | 0.05 | 14.84 | 0.00 | 2.255 | 2.02 | 2.41 | 2.2 | 97.8 | 0.0 | 0.36 | 0.20 | 0.36 | 0.85 | 2.71 | 764 | 91 | 2 | 0 | 5 | 0 | 0 | logfile |
✔ | 7E21 | 30949 | 2024-03-15 | 2021-02-04 | 2.9 | 3.14 | — | 3.2 | 0.014 | 1.35 | 0.0 | 0.72 | 28.00 | 0.01 | 2.077 | 13.59 | 0.89 | 7.8 | 91.3 | 0.9 | -3.81 | 0.69 | 0.85 | 2.58 | 3.2 | 0.003 | 1.54 | 0.0 | 0.15 | 24.99 | 0.00 | 2.133 | 7.47 | 1.43 | 6.8 | 93.0 | 0.2 | -0.26 | 0.56 | 0.67 | 0.85 | 2.11 | 10636 | 1302 | 8 | 0 | 17 | 5 | 0 | logfile |
✔ | 8oHP | 16883 | 2024-03-10 | 2023-03-21 | 2.7 | 3.15 | 1.65 | 3.0 | 0.015 | 1.28 | 0.0 | 1.27 | 31.06 | 0.00 | 2.283 | 2.70 | 0.00 | 0.0 | 100.0 | 0.0 | -3.72 | 0.52 | 0.82 | 4.81 | 3.0 | 0.002 | 0.54 | 0.0 | 0.05 | 19.78 | 0.00 | 2.224 | 2.89 | 0.76 | 0.0 | 100.0 | 0.0 | -2.47 | 1.11 | 0.49 | 0.81 | 4.16 | 2784 | 312 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7XAU | 33099 | 2024-03-11 | 2022-03-19 | 2.97 | 3.19 | 3.01 | 3.2 | 0.011 | 1.19 | 0.0 | 0.06 | 14.13 | 0.01 | 2.187 | 7.25 | 1.17 | 8.1 | 91.9 | 0.0 | -4.69 | 0.64 | 0.76 | 3.22 | 3.2 | 0.002 | 0.70 | 0.0 | 0.04 | 16.04 | 0.00 | 2.081 | 10.23 | 2.57 | 4.0 | 96.0 | 0.0 | -1.48 | 1.23 | 0.60 | 0.74 | 2.31 | 8443 | 1141 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6QNU | 4609 | 2024-03-11 | 2019-02-12 | 3.8 | 3.99 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.06 | 13.91 | 0.01 | 2.324 | 3.68 | 0.61 | 10.0 | 90.0 | 0.0 | -4.05 | 0.77 | 0.81 | 2.85 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.06 | 0.00 | 2.179 | 9.57 | 3.44 | 7.3 | 92.7 | 0.0 | -2.19 | 1.63 | 0.77 | 0.81 | 2.10 | 7250 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ET9 | 28589 | 2024-03-11 | 2022-10-16 | 3.61 | 3.97 | 3.84 | 3.9 | 0.005 | 0.61 | 0.0 | 0.04 | 10.84 | 0.01 | 2.058 | 8.46 | 0.52 | 1.8 | 98.2 | 0.0 | 1.38 | 0.46 | 0.67 | 2.05 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 14.58 | 0.00 | 1.929 | 9.24 | 2.62 | 3.3 | 96.7 | 0.0 | 0.98 | 4.54 | 0.47 | 0.69 | 2.05 | 7685 | 517 | 1 | 0 | 1 | 0 | 3796 | logfile |
✔ | 7YCi | 33740 | 2024-03-11 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 24.35 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 24.57 | 0.00 | 1.865 | 23.49 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.95 | 0.90 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 6ZKV | 11263 | 2024-03-12 | 2020-06-30 | 2.9 | 2.66 | — | 2.9 | 0.007 | 0.97 | 0.0 | 1.04 | 12.09 | 0.01 | 2.225 | 4.97 | 0.06 | 3.6 | 96.4 | 0.0 | -2.96 | 0.59 | 0.80 | 3.53 | 2.9 | 0.008 | 1.62 | 0.0 | 0.32 | 16.57 | 0.00 | 2.095 | 12.29 | 2.62 | 3.6 | 96.4 | 0.0 | 0.36 | 1.62 | 0.61 | 0.83 | 2.72 | 65224 | 7932 | 66 | 0 | 36 | 0 | 0 | logfile |
✔ | 6YHS | 10809 | 2024-03-18 | 2020-03-30 | 2.7 | 2.79 | 2.60 | 2.8 | 0.007 | 0.79 | 0.0 | 0.05 | 23.30 | 0.01 | 1.890 | 3.54 | 7.08 | 5.5 | 94.5 | 0.0 | -2.86 | 0.79 | 0.88 | 3.87 | 2.8 | 0.004 | 0.65 | 0.0 | 0.04 | 22.94 | 0.00 | 1.894 | 4.04 | 3.77 | 4.7 | 95.2 | 0.1 | -0.77 | 0.20 | 0.80 | 0.89 | 3.76 | 83514 | 3069 | 34 | 2800 | 161 | 0 | 0 | logfile |
✔ | 7N8o | 24239 | 2024-03-11 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 22.23 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.76 | 0.0 | 0.05 | 18.02 | 0.01 | 2.008 | 11.90 | 1.84 | 2.9 | 97.1 | 0.0 | 0.97 | 0.35 | 0.75 | 0.77 | 5.38 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✔ | 5XJY | 6724 | 2024-03-15 | 2017-05-04 | 4.1 | 4.17 | — | 4.1 | 0.010 | 1.31 | 0.0 | 0.07 | 14.80 | 0.01 | 2.200 | 9.25 | 1.27 | 14.1 | 85.8 | 0.2 | -6.01 | 0.64 | 0.76 | — | 4.1 | 0.003 | 0.81 | 0.0 | 0.05 | 12.36 | 0.01 | 2.110 | 11.90 | 0.11 | 9.4 | 90.6 | 0.0 | -1.48 | 3.01 | 0.63 | 0.74 | — | 12785 | 1901 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7XAT | 33098 | 2024-03-11 | 2022-03-19 | 2.85 | 3.05 | 2.92 | 3.1 | 0.010 | 1.00 | 0.0 | 0.06 | 13.72 | 0.01 | 2.215 | 5.11 | 0.82 | 6.7 | 93.3 | 0.0 | -4.15 | 0.66 | 0.82 | 3.83 | 3.1 | 0.005 | 0.69 | 0.0 | 0.04 | 15.72 | 0.00 | 2.182 | 9.61 | 3.04 | 5.6 | 94.4 | 0.0 | -1.04 | 0.50 | 0.65 | 0.83 | 3.37 | 8470 | 1153 | 6 | 0 | 0 | 0 | 0 | logfile |