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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XUM | 33474 | 2023-08-09 | 2022-05-19 | 3.8 | 3.49 | 3.48 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 13.82 | 0.00 | 1.938 | 6.52 | 0.00 | 3.7 | 96.3 | 0.0 | -0.15 | 0.56 | 0.76 | 1.43 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 2.119 | 9.07 | 0.44 | 4.1 | 95.9 | 0.0 | 0.17 | 0.35 | 0.57 | 0.76 | 0.69 | 6155 | 816 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7UJA | 26562 | 2023-08-16 | 2022-03-30 | 3.7 | 3.48 | 3.68 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 15.00 | 0.00 | 2.114 | 7.74 | 0.13 | 5.6 | 94.4 | 0.0 | -2.29 | 0.69 | 0.82 | 2.28 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.97 | 0.00 | 2.174 | 8.74 | 0.43 | 6.7 | 93.3 | 0.0 | -1.77 | 0.32 | 0.69 | 0.82 | 1.91 | 20748 | 2694 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 8D7E | 27228 | 2023-08-13 | 2022-06-07 | 2.93 | 3.17 | 2.98 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 12.14 | 0.00 | 2.257 | 5.40 | 0.70 | 2.9 | 97.1 | 0.0 | -2.25 | 0.67 | 0.81 | 3.32 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 16.05 | 0.00 | 2.244 | 5.80 | 4.60 | 3.7 | 96.3 | 0.0 | 0.15 | 1.58 | 0.66 | 0.85 | 3.34 | 8959 | 1143 | 9 | 0 | 8 | 0 | 0 | logfile |
✔ | 7WP0 | 32665 | 2023-08-09 | 2022-01-22 | 3.71 | 3.94 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 14.49 | 0.01 | 2.281 | 5.81 | 0.59 | 8.5 | 91.5 | 0.0 | -4.57 | 0.65 | 0.80 | 3.41 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.95 | 0.00 | 2.286 | 10.65 | 0.00 | 8.0 | 92.0 | 0.0 | -1.94 | 0.56 | 0.64 | 0.79 | 2.56 | 3174 | 407 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XKT | 33270 | 2023-08-24 | 2022-04-20 | 2.2 | 2.42 | 2.32 | 2.4 | 0.029 | 1.85 | 0.0 | 0.12 | 18.94 | 0.01 | 2.223 | 2.63 | 1.33 | 1.2 | 98.8 | 0.0 | 1.53 | 0.59 | 0.82 | 4.13 | 2.4 | 0.002 | 0.57 | 0.0 | 0.04 | 16.83 | 0.00 | 2.157 | 3.24 | 0.22 | 2.5 | 97.5 | 0.0 | 4.54 | 1.26 | 0.56 | 0.81 | 4.01 | 34488 | 1992 | 36 | 0 | 108 | 444 | 16008 | logfile |
✔ | 6BUZ | 7293 | 2023-08-12 | 2017-12-11 | 3.92 | 4.51 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 27.46 | 0.01 | 2.308 | 8.08 | 0.00 | 5.6 | 94.4 | 0.0 | -5.03 | 0.85 | 0.86 | 3.06 | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 28.79 | 0.00 | 2.047 | 22.68 | 0.82 | 7.2 | 92.8 | 0.0 | -0.15 | 1.30 | 0.85 | 0.86 | 1.64 | 12509 | 878 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 8FEL | 29032 | 2023-08-11 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 12.77 | 0.00 | 2.288 | 10.75 | 0.00 | 3.8 | 96.2 | 0.0 | 0.13 | 1.69 | 0.74 | 0.45 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2023-08-17 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.40 | 0.0 | 0.02 | 12.74 | 0.03 | 1.702 | 3.90 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.005 | 0.75 | 0.0 | 0.04 | 15.49 | 0.01 | 1.995 | 11.55 | 5.52 | 8.1 | 91.7 | 0.2 | -2.21 | 0.50 | 0.63 | 0.83 | 1.98 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6Z6o | 11101 | 2023-08-19 | 2020-05-28 | 3.8 | 4.70 | — | 4.2 | 0.006 | 0.92 | 0.0 | 0.05 | 15.43 | 0.01 | 2.104 | 8.05 | 0.96 | 7.9 | 92.1 | 0.0 | -3.37 | 0.84 | 0.81 | 0.94 | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 16.45 | 0.00 | 1.974 | 16.06 | 0.27 | 7.1 | 92.9 | 0.0 | -0.37 | 0.54 | 0.85 | 0.81 | 0.91 | 77516 | 9628 | 24 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PCQ | 20304 | 2023-08-17 | 2019-06-18 | 2.6 | 3.06 | — | 2.9 | 0.008 | 0.46 | 0.0 | 0.02 | 12.76 | 0.03 | 1.976 | 3.10 | 1.84 | 6.8 | 93.2 | 0.0 | -4.00 | 0.66 | 0.84 | 4.35 | 2.9 | 0.006 | 0.73 | 0.0 | 0.04 | 15.08 | 0.01 | 2.032 | 9.59 | 3.95 | 7.7 | 92.1 | 0.2 | -1.58 | 1.72 | 0.67 | 0.86 | 3.88 | 72125 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PC7 | 20298 | 2023-08-17 | 2019-06-16 | 2.5 | 3.01 | — | 2.9 | 0.006 | 0.51 | 0.0 | 0.03 | 12.98 | 0.03 | 1.954 | 2.85 | 2.23 | 6.2 | 93.7 | 0.1 | -3.93 | 0.66 | 0.85 | 3.71 | 2.9 | 0.006 | 0.71 | 0.0 | 0.04 | 14.71 | 0.01 | 1.999 | 7.54 | 4.34 | 6.8 | 93.0 | 0.2 | -1.16 | 1.25 | 0.67 | 0.88 | 4.01 | 72146 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCS | 20306 | 2023-08-17 | 2019-06-18 | 2.8 | 3.17 | — | 3.0 | 0.005 | 0.40 | 0.0 | 0.02 | 12.69 | 0.03 | 1.658 | 3.31 | 1.31 | 5.7 | 94.1 | 0.1 | -3.87 | 0.66 | 0.86 | 3.98 | 3.0 | 0.006 | 0.72 | 0.0 | 0.04 | 15.09 | 0.01 | 1.964 | 8.80 | 4.06 | 7.2 | 92.5 | 0.3 | -1.60 | 1.27 | 0.67 | 0.89 | 3.52 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7WP1 | 32666 | 2023-08-09 | 2022-01-22 | 3.77 | 3.91 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 14.56 | 0.02 | 2.338 | 3.88 | 0.00 | 12.2 | 87.5 | 0.2 | -5.40 | 0.64 | 0.78 | 2.71 | 3.9 | 0.004 | 0.80 | 0.0 | 0.05 | 16.26 | 0.00 | 2.064 | 13.18 | 1.13 | 11.8 | 88.2 | 0.0 | -3.82 | 0.96 | 0.63 | 0.78 | 2.11 | 3305 | 423 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PCR | 20305 | 2023-08-17 | 2019-06-18 | 2.5 | 3.04 | — | 2.9 | 0.006 | 0.47 | 0.0 | 0.03 | 13.21 | 0.03 | 1.808 | 2.72 | 2.36 | 5.2 | 94.6 | 0.2 | -3.36 | 0.72 | 0.89 | 4.33 | 2.9 | 0.005 | 0.69 | 0.0 | 0.03 | 14.91 | 0.01 | 1.905 | 6.82 | 2.36 | 6.1 | 93.9 | 0.0 | -0.53 | 1.23 | 0.72 | 0.91 | 4.47 | 72166 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 8i0Q | 35106 | 2023-08-10 | 2023-01-11 | 4.45 | 4.83 | 5.07 | 4.4 | 0.003 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 2.167 | 9.44 | 0.00 | 5.1 | 94.9 | 0.0 | -1.41 | 0.82 | 0.81 | — | 4.4 | 0.002 | 0.59 | 0.0 | 0.04 | 13.14 | 0.00 | 2.202 | 8.97 | 0.00 | 4.9 | 95.1 | 0.0 | -0.72 | 0.47 | 0.82 | 0.82 | — | 8842 | 1192 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WS4 | 32743 | 2023-08-19 | 2022-01-28 | 3.7 | 4.11 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.05 | 13.41 | 0.00 | 2.110 | 9.30 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.83 | 0.85 | 2.54 | 3.9 | 0.007 | 0.69 | 0.0 | 0.05 | 14.93 | 0.00 | 2.105 | 10.56 | 0.31 | 4.4 | 95.6 | 0.0 | -0.12 | 0.34 | 0.84 | 0.87 | 2.50 | 26566 | 3327 | 22 | 0 | 38 | 0 | 0 | logfile |
✔ | 8A9A | 15274 | 2023-08-12 | 2022-06-28 | 3.3 | 3.59 | 3.34 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 18.00 | 0.00 | 2.116 | 12.52 | 0.14 | 10.5 | 89.1 | 0.4 | -1.45 | 0.63 | 0.58 | 1.12 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.22 | 0.00 | 2.151 | 16.93 | 0.43 | 10.9 | 88.8 | 0.3 | -2.17 | 1.47 | 0.70 | 0.69 | 1.25 | 12772 | 1618 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoN | 32652 | 2023-08-09 | 2022-01-22 | 3.9 | 4.07 | — | 4.0 | 0.006 | 0.98 | 0.0 | 0.06 | 14.56 | 0.01 | 2.035 | 5.41 | 0.28 | 9.8 | 90.2 | 0.0 | -4.42 | 0.67 | 0.83 | 2.49 | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 16.23 | 0.00 | 2.133 | 11.91 | 0.28 | 10.0 | 90.0 | 0.0 | -3.09 | 0.99 | 0.67 | 0.83 | 2.57 | 3318 | 425 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6MSG | 9219 | 2023-08-26 | 2018-10-16 | 3.5 | 3.75 | — | 3.0 | 0.006 | 0.98 | 0.0 | 0.05 | 10.85 | 0.01 | 2.089 | 5.53 | 0.43 | 8.6 | 91.1 | 0.3 | -5.41 | 0.84 | 0.78 | 1.87 | 3.0 | 0.004 | 0.71 | 1.0 | 0.04 | 13.75 | 0.00 | 1.926 | 12.55 | 0.25 | 8.2 | 91.7 | 0.1 | -0.61 | 1.44 | 0.85 | 0.82 | 1.62 | 104399 | 13398 | 54 | 0 | 33 | 0 | 0 | logfile |
✔ | 7W3J | 32282 | 2023-08-10 | 2021-11-25 | 3.5 | 4.46 | — | 3.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.71 | 0.01 | 1.739 | 6.46 | 0.55 | 6.9 | 93.0 | 0.1 | -1.22 | 0.83 | 0.81 | 1.76 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.75 | 0.00 | 2.064 | 11.67 | 0.20 | 6.5 | 93.5 | 0.0 | 0.42 | 0.78 | 0.87 | 0.85 | 1.50 | 110559 | 14071 | 55 | 0 | 7 | 0 | 0 | logfile |