Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XUM	33474	2023-08-09	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.003	0.60	0.0	0.04	15.91	0.00	2.119	9.07	0.44	4.1	95.9	0.0	0.17	0.35	0.57	0.76	0.69	6155	816	1	0	1	0	0	logfile
✔	7UJA	26562	2023-08-16	2022-03-30	3.7	3.48	3.68	3.8	0.003	0.58	0.0	0.04	15.00	0.00	2.114	7.74	0.13	5.6	94.4	0.0	-2.29	0.69	0.82	2.28	3.7	0.003	0.64	0.0	0.04	15.97	0.00	2.174	8.74	0.43	6.7	93.3	0.0	-1.77	0.32	0.69	0.82	1.91	20748	2694	21	0	3	0	0	logfile
✔	8D7E	27228	2023-08-13	2022-06-07	2.93	3.17	2.98	3.1	0.002	0.49	0.0	0.04	12.14	0.00	2.257	5.40	0.70	2.9	97.1	0.0	-2.25	0.67	0.81	3.32	3.1	0.003	0.60	0.0	0.04	16.05	0.00	2.244	5.80	4.60	3.7	96.3	0.0	0.15	1.58	0.66	0.85	3.34	8959	1143	9	0	8	0	0	logfile
✔	7WP0	32665	2023-08-09	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✔	7XKT	33270	2023-08-24	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	18.94	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.57	0.0	0.04	16.83	0.00	2.157	3.24	0.22	2.5	97.5	0.0	4.54	1.26	0.56	0.81	4.01	34488	1992	36	0	108	444	16008	logfile
✔	6BUZ	7293	2023-08-12	2017-12-11	3.92	4.51	—	4.2	0.008	0.88	0.0	0.05	27.46	0.01	2.308	8.08	0.00	5.6	94.4	0.0	-5.03	0.85	0.86	3.06	4.2	0.005	0.79	0.0	0.04	28.79	0.00	2.047	22.68	0.82	7.2	92.8	0.0	-0.15	1.30	0.85	0.86	1.64	12509	878	11	290	0	0	0	logfile
✔	8FEL	29032	2023-08-11	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	6PCH	20300	2023-08-17	2019-06-17	2.9	3.23	—	3.1	0.005	0.40	0.0	0.02	12.74	0.03	1.702	3.90	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.005	0.75	0.0	0.04	15.49	0.01	1.995	11.55	5.52	8.1	91.7	0.2	-2.21	0.50	0.63	0.83	1.98	72134	964	8	3015	1	0	0	logfile
✔	6Z6o	11101	2023-08-19	2020-05-28	3.8	4.70	—	4.2	0.006	0.92	0.0	0.05	15.43	0.01	2.104	8.05	0.96	7.9	92.1	0.0	-3.37	0.84	0.81	0.94	4.2	0.003	0.68	0.0	0.04	16.45	0.00	1.974	16.06	0.27	7.1	92.9	0.0	-0.37	0.54	0.85	0.81	0.91	77516	9628	24	0	8	0	0	logfile
✔	6PCQ	20304	2023-08-17	2019-06-18	2.6	3.06	—	2.9	0.008	0.46	0.0	0.02	12.76	0.03	1.976	3.10	1.84	6.8	93.2	0.0	-4.00	0.66	0.84	4.35	2.9	0.006	0.73	0.0	0.04	15.08	0.01	2.032	9.59	3.95	7.7	92.1	0.2	-1.58	1.72	0.67	0.86	3.88	72125	963	8	3015	1	0	0	logfile
✔	6PC7	20298	2023-08-17	2019-06-16	2.5	3.01	—	2.9	0.006	0.51	0.0	0.03	12.98	0.03	1.954	2.85	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.006	0.71	0.0	0.04	14.71	0.01	1.999	7.54	4.34	6.8	93.0	0.2	-1.16	1.25	0.67	0.88	4.01	72146	964	8	3015	1	0	0	logfile
✔	6PCS	20306	2023-08-17	2019-06-18	2.8	3.17	—	3.0	0.005	0.40	0.0	0.02	12.69	0.03	1.658	3.31	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.72	0.0	0.04	15.09	0.01	1.964	8.80	4.06	7.2	92.5	0.3	-1.60	1.27	0.67	0.89	3.52	72169	967	8	3015	1	0	0	logfile
✔	7WP1	32666	2023-08-09	2022-01-22	3.77	3.91	—	3.9	0.006	1.17	0.0	0.07	14.56	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	3.9	0.004	0.80	0.0	0.05	16.26	0.00	2.064	13.18	1.13	11.8	88.2	0.0	-3.82	0.96	0.63	0.78	2.11	3305	423	4	0	2	0	0	logfile
✔	6PCR	20305	2023-08-17	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	8i0Q	35106	2023-08-10	2023-01-11	4.45	4.83	5.07	4.4	0.003	0.59	0.0	0.04	12.56	0.00	2.167	9.44	0.00	5.1	94.9	0.0	-1.41	0.82	0.81	—	4.4	0.002	0.59	0.0	0.04	13.14	0.00	2.202	8.97	0.00	4.9	95.1	0.0	-0.72	0.47	0.82	0.82	—	8842	1192	8	0	0	0	0	logfile
✔	7WS4	32743	2023-08-19	2022-01-28	3.7	4.11	—	3.9	0.004	0.62	0.0	0.05	13.41	0.00	2.110	9.30	0.00	3.5	96.5	0.0	0.09	0.83	0.85	2.54	3.9	0.007	0.69	0.0	0.05	14.93	0.00	2.105	10.56	0.31	4.4	95.6	0.0	-0.12	0.34	0.84	0.87	2.50	26566	3327	22	0	38	0	0	logfile
✔	8A9A	15274	2023-08-12	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.004	0.78	0.0	0.04	18.22	0.00	2.151	16.93	0.43	10.9	88.8	0.3	-2.17	1.47	0.70	0.69	1.25	12772	1618	2	0	0	0	0	logfile
✔	7WoN	32652	2023-08-09	2022-01-22	3.9	4.07	—	4.0	0.006	0.98	0.0	0.06	14.56	0.01	2.035	5.41	0.28	9.8	90.2	0.0	-4.42	0.67	0.83	2.49	4.0	0.004	0.71	0.0	0.04	16.23	0.00	2.133	11.91	0.28	10.0	90.0	0.0	-3.09	0.99	0.67	0.83	2.57	3318	425	4	0	2	0	0	logfile
✔	6MSG	9219	2023-08-26	2018-10-16	3.5	3.75	—	3.0	0.006	0.98	0.0	0.05	10.85	0.01	2.089	5.53	0.43	8.6	91.1	0.3	-5.41	0.84	0.78	1.87	3.0	0.004	0.71	1.0	0.04	13.75	0.00	1.926	12.55	0.25	8.2	91.7	0.1	-0.61	1.44	0.85	0.82	1.62	104399	13398	54	0	33	0	0	logfile
✔	7W3J	32282	2023-08-10	2021-11-25	3.5	4.46	—	3.0	0.005	0.84	0.0	0.05	14.71	0.01	1.739	6.46	0.55	6.9	93.0	0.1	-1.22	0.83	0.81	1.76	3.0	0.003	0.62	0.0	0.04	15.75	0.00	2.064	11.67	0.20	6.5	93.5	0.0	0.42	0.78	0.87	0.85	1.50	110559	14071	55	0	7	0	0	logfile

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