Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	5A8L	3099	2023-02-20	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.91	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	7JSE	22451	2023-02-20	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.006	1.04	0.0	0.08	14.36	0.00	2.181	8.70	0.00	15.8	84.2	0.0	-2.47	2.74	0.84	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	7XSK	33425	2023-02-20	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSL	33426	2023-02-20	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	5G2X	3331	2023-02-22	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.03	18.97	0.00	2.000	29.45	0.91	18.5	80.5	1.1	-5.04	2.32	0.80	0.65	0.86	19072	487	3	704	0	0	0	logfile
✔	6UES	20755	2023-02-17	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7JSH	22454	2023-02-18	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7V9A	31813	2023-02-22	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	14.82	0.00	2.260	6.87	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.003	0.71	0.0	0.04	17.01	0.00	2.138	13.49	0.33	8.4	91.6	0.0	-2.16	1.88	0.72	0.68	1.10	16876	1723	10	146	0	0	0	logfile
✔	6HD5	0201	2023-02-19	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.78	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7oBQ	12799	2023-02-22	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	12.88	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.003	0.72	0.0	0.04	15.48	0.00	1.906	16.54	0.73	4.1	95.9	0.0	0.38	0.65	0.77	0.81	1.12	16668	1642	11	165	39	0	0	logfile
✔	7N0K	24107	2023-02-17	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	7V99	31811	2023-02-21	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	14.51	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.003	0.60	0.0	0.03	15.54	0.00	2.191	12.54	0.40	5.9	94.1	0.1	-0.02	1.36	0.82	0.75	0.86	14582	1170	5	249	0	0	0	logfile
✔	7NAF	24271	2023-02-22	2021-06-21	3.13	3.14	3.06	3.1	0.005	0.62	0.0	0.03	15.40	0.01	2.172	7.07	0.00	4.2	95.8	0.0	0.43	0.70	0.78	3.17	3.1	0.005	0.66	0.0	0.04	16.46	0.00	2.125	7.42	0.43	5.9	94.1	0.0	-0.06	0.31	0.71	0.82	3.06	18868	1342	17	378	0	2	0	logfile
✔	6NEQ	9358	2023-02-24	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.28	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.66	0.0	0.04	16.27	0.00	2.100	12.83	0.23	5.4	94.6	0.1	-0.31	1.98	0.85	0.85	1.31	65776	5509	32	952	147	0	0	logfile
✔	7WB0	32391	2023-02-19	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.58	0.0	0.03	19.27	0.00	2.184	8.33	0.00	4.3	95.6	0.1	0.39	1.06	0.71	0.77	1.00	10096	797	4	175	0	0	0	logfile
✔	7WiJ	32531	2023-02-20	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7KoD	22972	2023-02-26	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.86	0.00	1.860	2.84	0.22	0.6	99.4	0.0	5.19	0.83	0.87	0.93	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	7AJQ	11806	2023-02-19	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.92	0.0	0.05	15.83	0.00	2.139	20.36	0.21	3.6	96.4	0.0	0.85	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile

• ← previous
• Page 2 of 353
• next →