Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N8o	24239	2023-08-10	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	8CEU	16613	2023-08-22	2023-02-02	1.83	1.74	1.82	1.7	0.009	1.57	16.0	0.11	13.99	0.03	1.830	0.53	0.65	2.7	97.2	0.0	-1.11	0.79	0.85	6.99	1.7	0.005	0.94	16.0	0.05	14.24	0.01	1.796	4.66	0.33	1.9	98.0	0.0	-0.28	0.77	0.84	0.89	6.85	92838	3076	79	2872	304	6830	0	logfile
✔	7QKW	14055	2023-08-09	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	7M4X	23669	2023-08-23	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7VD9	31911	2023-08-14	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7EFC	31083	2023-08-09	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✔	7UUR	26801	2023-08-13	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	8ooS	17027	2023-08-12	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.89	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.80	0.0	0.04	25.73	0.00	1.975	9.92	0.12	3.2	96.8	0.0	0.79	1.61	0.74	0.74	1.54	12307	966	10	217	3	0	0	logfile
✔	8CAi	16526	2023-08-24	2023-01-24	2.08	1.77	1.93	1.9	0.014	1.53	2.0	0.14	13.98	0.03	1.839	0.59	0.86	3.7	96.2	0.1	-1.66	0.65	0.81	5.19	1.9	0.005	0.84	0.0	0.05	14.26	0.01	1.790	7.42	1.41	3.0	97.0	0.0	0.45	1.58	0.74	0.85	4.96	37814	1552	33	1114	90	1416	0	logfile
✔	7M4U	23666	2023-08-09	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	7o6E	12738	2023-08-23	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7RCV	24407	2023-08-10	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✔	7EFD	31084	2023-08-09	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✘	7ZG7	14705	2023-08-24	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.06	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39086	4128	72	0	382	2680	0	logfile
✔	7PQU	13605	2023-08-12	2021-09-20	3.03	1.80	—	3.4	0.008	0.88	0.0	0.05	16.74	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.62	0.0	0.04	16.43	0.01	2.258	9.01	0.18	6.0	94.0	0.0	-0.28	0.99	0.75	0.79	2.45	10798	1312	12	0	8	14	0	logfile
✔	8AB6	15312	2023-08-22	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.93	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.004	0.68	0.0	0.04	16.61	0.00	1.996	3.87	0.65	1.7	98.3	0.0	1.95	0.98	0.73	0.87	6.06	32914	3878	53	0	30	1326	0	logfile
✔	8ooA	17008	2023-08-10	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	28.16	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.005	0.62	0.0	0.04	28.81	0.00	2.125	7.71	0.00	2.3	97.7	0.0	1.67	1.03	0.77	0.77	2.62	8405	529	8	204	0	0	0	logfile
✔	7PF1	13364	2023-08-25	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.25	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.004	0.61	0.0	0.04	17.28	0.00	1.913	10.65	0.00	2.3	97.7	0.0	4.72	1.38	0.78	0.83	6.97	41646	4176	72	0	263	7207	0	logfile
✔	8G6Y	29788	2023-08-22	2023-02-16	2.09	1.85	2.01	1.9	0.007	0.89	0.0	0.05	14.74	0.03	1.446	5.72	3.72	3.5	96.3	0.2	-1.60	0.73	0.86	6.08	2.0	0.006	0.94	0.0	0.05	15.01	0.01	1.694	5.60	2.44	3.6	96.3	0.1	-0.30	1.19	0.73	0.89	6.01	93683	3175	69	3037	250	3460	0	logfile
✔	7V66	31736	2023-08-22	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	5.1	0.004	0.76	0.0	0.04	15.44	0.00	2.197	20.43	1.35	4.9	95.1	0.0	2.55	1.19	0.16	0.14	-0.14	33216	4128	24	0	0	0	0	logfile

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