Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RCV	24407	2022-05-12	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.01	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.004	0.79	0.0	0.05	18.79	0.01	2.078	12.10	1.79	2.8	97.2	0.0	0.86	0.91	0.79	0.82	5.23	54656	5544	114	0	228	1236	0	logfile
✔	7o6E	12738	2022-05-17	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✘	7EFD	31084	2022-05-14	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	7F4V	31455	2022-05-14	2021-06-21	2.04	1.80	—	2.0	0.025	2.41	0.0	0.08	19.51	0.03	1.163	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✘	7ATE	11921	2022-05-13	2020-10-30	2.4	1.80	2.30	1.8	0.011	1.33	6.0	0.07	16.98	0.01	1.340	17.56	1.67	3.2	96.8	0.0	0.62	0.62	0.78	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9056	1098	10	0	9	145	0	logfile
✔	7PF1	13364	2022-05-17	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✘	7SA3	24943	2022-05-14	2021-09-22	2.25	1.86	—	2.2	0.022	2.27	0.0	0.08	19.95	0.01	1.206	11.63	4.04	3.7	96.0	0.2	-1.16	0.78	0.84	4.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15960	1644	19	0	79	230	0	logfile
✔	7M4Z	23671	2022-05-17	2021-03-22	2.92	1.87	—	1.6	0.007	0.56	0.0	0.04	15.16	0.02	1.833	4.66	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.008	0.78	2.0	0.04	16.16	0.01	1.709	7.63	1.68	3.3	96.5	0.2	0.34	0.35	0.79	0.75	2.67	138172	5625	70	4373	190	229	0	logfile
✔	6ZGL	11210	2022-05-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✘	7D1T	30547	2022-05-12	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6S61	10101	2022-05-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	7P6A	13223	2022-05-12	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7RYG	24739	2022-05-17	2021-08-25	2.38	1.92	—	2.2	0.006	0.63	0.0	0.07	15.89	0.02	1.799	3.80	2.32	2.6	97.2	0.1	1.15	0.77	0.74	3.06	1.6	0.007	0.91	0.0	0.05	16.36	0.01	1.723	5.37	4.22	3.4	96.5	0.1	0.14	1.13	0.79	0.77	3.19	137579	5505	55	4408	8	0	0	logfile
✘	7D1U	30548	2022-05-18	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	7RYH	24740	2022-05-16	2021-08-25	2.43	1.94	—	2.2	0.005	0.63	0.0	0.07	15.90	0.02	1.844	3.81	2.55	2.2	97.7	0.1	1.17	0.77	0.74	2.99	1.6	0.005	0.78	0.0	0.05	16.18	0.01	1.851	5.60	4.94	2.7	97.1	0.1	0.53	0.29	0.78	0.76	3.01	135829	5499	53	4328	8	0	0	logfile
✔	7MiJ	23853	2022-05-15	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.003	0.58	0.0	0.04	18.50	0.00	2.156	4.67	1.18	2.8	97.2	0.0	1.00	1.08	0.77	0.82	4.97	23010	2556	12	0	38	328	0	logfile
✔	7P13	13154	2022-05-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.7	0.004	0.52	0.0	0.04	17.33	0.00	2.087	15.59	1.88	2.8	97.2	0.0	4.89	0.51	0.84	0.88	3.66	13727	1743	7	0	0	0	154	logfile
✔	7SiL	25143	2022-05-13	2021-10-14	2.7	1.97	—	1.5	0.004	0.72	0.0	0.05	13.50	0.00	2.160	6.73	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.009	1.04	1.0	0.05	15.86	0.00	1.980	9.76	1.11	2.8	97.2	0.0	0.40	0.34	0.77	0.77	3.05	12924	1564	8	0	34	0	0	logfile
✔	7P6B	13224	2022-05-12	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	7PBW	13307	2022-05-13	2021-08-02	2.1	1.98	—	2.1	0.015	4.32	0.0	0.05	16.89	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	2.36	0.0	0.04	16.71	0.01	2.127	7.68	0.15	0.0	100.0	0.0	4.33	0.30	0.77	0.89	7.33	9500	873	54	0	81	230	0	logfile

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