Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GTD	0062	2021-06-01	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.66	—	3.8	0.004	0.76	0.0	0.04	19.99	0.00	2.122	15.58	0.00	16.1	83.9	0.0	-3.05	1.33	0.78	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6GTE	0063	2021-06-02	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	16.15	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.003	0.66	0.0	0.04	16.29	0.00	2.170	14.87	0.00	9.7	90.3	0.0	-3.06	0.84	0.73	0.70	—	10872	1274	4	67	0	0	0	logfile
✔	6GTF	0064	2021-06-02	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	16.19	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.003	0.69	0.0	0.04	17.75	0.01	2.106	14.04	0.32	8.7	91.3	0.0	-2.99	1.46	0.74	0.65	1.37	10871	1280	4	66	0	0	0	logfile
✔	6GTG	0065	2021-06-02	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	14.80	0.01	2.051	6.61	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.003	0.61	0.0	0.04	16.90	0.00	2.144	11.72	0.52	9.6	90.4	0.0	-3.17	0.80	0.70	0.76	1.86	12538	1298	8	91	4	3	0	logfile
✔	6GVE	0071	2021-06-04	2018-06-20	3.9	4.13	3.97	4.0	0.073	1.80	0.0	0.07	11.90	0.01	1.441	7.01	0.11	4.2	95.8	0.0	-3.72	0.77	0.75	1.99	4.0	0.003	0.76	0.0	0.05	16.12	0.01	2.139	14.16	0.62	3.9	96.0	0.0	-0.60	1.36	0.81	0.82	1.45	33412	4272	24	0	8	0	0	logfile
✘	6GWT	0076	2021-06-05	2018-06-25	3.8	4.53	—	4.2	0.004	0.84	5.0	0.04	13.81	0.01	1.229	5.98	0.19	8.2	91.3	0.5	-4.05	0.85	0.83	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151484	6670	59	4639	1	0	0	logfile
✔	6GX5	0077	2021-06-01	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.75	0.0	0.05	16.68	0.00	2.294	6.87	1.23	6.2	93.8	0.0	-2.82	0.65	0.82	0.86	5.18	2133	282	3	0	0	0	0	logfile
✘	6GXM	0080	2021-06-05	2018-06-27	3.8	4.73	—	4.3	0.004	0.81	0.0	0.04	13.85	0.01	1.229	6.05	0.20	8.4	91.2	0.4	-4.08	0.85	0.83	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151394	6643	59	4639	1	0	0	logfile
✘	6GXN	0081	2021-06-05	2018-06-27	3.9	4.79	—	4.3	0.003	0.80	4.0	0.04	13.87	0.01	1.098	6.05	0.17	8.1	91.4	0.5	-4.05	0.86	0.83	0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151860	6741	59	4638	1	0	0	logfile
✘	6GXo	0082	2021-06-05	2018-06-27	3.9	4.77	—	4.3	0.004	0.82	4.0	0.04	13.92	0.01	0.695	7.12	0.15	8.2	91.3	0.5	-3.98	0.85	0.83	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151479	6643	59	4643	1	0	0	logfile
✘	6GXP	0083	2021-06-04	2018-06-27	4.4	5.60	—	5.1	0.003	0.80	6.0	0.04	14.00	0.01	1.229	5.43	0.27	8.3	91.2	0.5	-4.12	0.84	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147637	6392	56	4555	1	0	0	logfile
✔	6GY6	0088	2021-06-02	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.003	0.65	0.0	0.04	14.68	0.00	2.049	11.68	0.18	2.1	97.9	0.0	2.61	1.46	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6GYB	0089	2021-06-05	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.03	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.004	0.61	0.0	0.04	14.32	0.00	2.161	7.01	0.32	5.2	94.8	0.0	-0.82	0.58	0.80	0.87	3.62	59318	7546	42	0	0	0	0	logfile
✔	6GYL	0091	2021-06-05	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.13	0.16	6.2	92.7	1.1	-3.33	0.32	0.00	—	3.3	0.003	0.79	0.0	0.04	14.39	0.01	2.097	19.63	0.00	7.2	92.6	0.2	-1.51	2.19	0.52	0.21	—	43409	5250	30	112	11	0	0	logfile
✔	6GYN	0093	2021-06-02	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.52	0.0	0.04	13.26	0.00	2.246	6.64	0.23	2.6	97.4	0.0	2.78	1.96	0.67	0.85	2.16	16932	1980	8	0	36	0	0	logfile
✘	6GYo	0094	2021-06-02	2018-06-30	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17540	2004	8	0	48	0	0	logfile
✔	6GYP	0095	2021-06-02	2018-07-01	3.6	3.70	—	3.7	0.006	0.95	0.0	0.05	10.75	0.01	2.259	4.80	0.50	7.1	92.8	0.1	-4.51	0.57	0.68	2.48	3.6	0.003	0.66	0.0	0.04	15.17	0.00	2.167	10.95	0.35	5.6	94.3	0.0	-0.44	1.34	0.75	0.82	1.53	17811	2148	6	0	0	0	0	logfile
✔	6GYS	0096	2021-06-04	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	15.38	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.003	0.66	0.0	0.04	15.43	0.00	1.419	17.36	0.00	7.4	92.6	0.0	-0.81	1.69	0.92	0.81	—	38890	4441	16	104	8	0	0	logfile
✔	6GYU	0097	2021-06-02	2018-07-02	3.0	3.35	—	3.3	0.005	0.94	0.0	0.05	10.80	0.01	1.349	5.92	0.74	6.4	93.4	0.3	-4.30	0.70	0.73	3.36	3.2	0.003	0.70	0.0	0.04	15.43	0.00	2.164	11.43	2.21	5.6	94.4	0.0	0.15	1.35	0.81	0.85	2.47	18159	2193	6	0	2	0	0	logfile
✔	6GZ3	0098	2021-06-05	2018-07-03	3.6	3.96	—	3.7	0.003	0.80	0.0	0.04	13.94	0.01	1.579	5.35	0.12	8.5	91.3	0.2	-3.73	0.79	0.71	1.58	3.7	0.006	0.75	1.0	0.04	16.37	0.01	1.090	16.94	0.81	9.6	90.2	0.2	-1.24	1.35	0.86	0.86	1.28	225624	12699	106	5760	333	0	0	logfile

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