Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GTG	0065	2022-07-03	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	14.80	0.01	2.051	6.69	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.003	0.66	0.0	0.04	16.93	0.00	2.050	13.34	0.26	10.2	89.8	0.0	-3.31	1.15	0.69	0.75	1.70	12538	1298	8	91	4	3	0	logfile
✔	6GVE	0071	2022-07-06	2018-06-20	3.9	4.13	3.97	4.0	0.010	0.99	0.0	0.06	10.07	0.01	2.133	7.04	0.11	4.2	95.8	0.0	-3.72	0.77	0.75	1.99	4.0	0.003	0.73	0.0	0.05	14.79	0.01	2.134	14.80	0.62	4.2	95.8	0.0	-0.81	1.32	0.81	0.82	1.59	33412	4272	24	0	8	0	0	logfile
✔	6GWT	0076	2022-07-10	2018-06-25	3.8	4.53	—	4.2	0.004	0.84	5.0	0.04	13.81	0.01	1.272	6.08	0.19	8.2	91.3	0.5	-4.05	0.85	0.83	0.58	4.2	0.005	0.77	0.0	0.04	16.25	0.01	1.979	26.63	1.57	11.0	88.6	0.4	-2.23	1.78	0.87	0.88	0.61	151484	6670	59	4639	1	0	0	logfile
✔	6GX5	0077	2022-07-02	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.005	0.77	0.0	0.05	17.37	0.00	2.112	7.56	0.82	5.4	94.6	0.0	-2.84	0.66	0.83	0.86	4.48	2133	282	3	0	0	0	0	logfile
✔	6GXM	0080	2022-07-10	2018-06-27	3.8	4.73	—	4.3	0.004	0.81	0.0	0.04	13.85	0.01	1.322	6.12	0.20	8.4	91.2	0.4	-4.08	0.85	0.83	0.31	4.3	0.005	0.75	1.0	0.04	15.88	0.01	1.501	29.85	1.15	10.6	89.2	0.2	-1.99	1.75	0.87	0.87	0.38	151394	6643	59	4639	1	0	0	logfile
✔	6GXN	0081	2022-07-10	2018-06-27	3.9	4.79	—	4.3	0.003	0.80	4.0	0.04	13.88	0.01	1.098	6.13	0.17	8.1	91.4	0.5	-4.05	0.86	0.83	0.48	4.3	0.005	0.76	0.0	0.04	16.32	0.01	2.034	29.51	1.35	10.9	88.9	0.2	-2.02	1.81	0.88	0.87	0.55	151860	6741	59	4638	1	0	0	logfile
✔	6GXo	0082	2022-07-10	2018-06-27	3.9	4.77	—	4.3	0.004	0.82	4.0	0.04	13.92	0.01	0.695	7.20	0.15	8.2	91.3	0.5	-3.98	0.85	0.83	0.32	4.3	0.005	0.77	0.0	0.04	16.46	0.01	2.014	29.71	1.26	10.6	89.1	0.3	-2.17	1.81	0.87	0.87	0.47	151479	6643	59	4643	1	0	0	logfile
✔	6GXP	0083	2022-07-08	2018-06-27	4.4	5.60	—	5.1	0.003	0.80	6.0	0.04	14.00	0.01	1.608	5.48	0.27	8.3	91.2	0.5	-4.12	0.84	0.79	—	5.1	0.006	0.83	0.0	0.04	16.84	0.01	1.954	45.31	0.02	12.5	87.3	0.2	-2.55	2.26	0.87	0.86	—	147637	6392	56	4555	1	0	0	logfile
✔	6GY6	0088	2022-07-04	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.003	0.67	0.0	0.04	14.57	0.00	2.131	11.60	0.17	2.1	97.9	0.0	2.52	0.93	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6GYB	0089	2022-07-03	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.15	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.005	0.62	0.0	0.04	14.16	0.00	2.146	7.29	0.39	5.7	94.3	0.0	-0.98	0.55	0.81	0.89	3.80	59318	7546	42	0	0	0	0	logfile
✔	6GYL	0091	2022-07-07	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.28	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.009	1.01	3.0	0.05	14.53	0.01	1.407	24.14	0.02	6.3	93.4	0.3	-1.66	1.22	0.50	0.18	—	43409	5250	30	112	11	0	0	logfile
✔	6GYN	0093	2022-07-04	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.32	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.54	0.0	0.04	13.29	0.00	2.264	7.70	0.17	2.6	97.4	0.0	2.33	0.49	0.65	0.83	2.26	16932	1980	8	0	36	0	0	logfile
✘	6GYo	0094	2022-07-04	2018-06-30	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17540	2004	8	0	48	0	0	logfile
✔	6GYP	0095	2022-07-04	2018-07-01	3.6	3.70	—	3.7	0.006	0.95	0.0	0.05	10.75	0.01	2.259	4.85	0.50	7.1	92.8	0.1	-4.51	0.57	0.68	2.48	3.7	0.004	0.73	0.0	0.04	15.05	0.00	2.162	11.83	0.40	6.1	93.8	0.0	-0.54	0.79	0.74	0.82	1.49	17811	2148	6	0	0	0	0	logfile
✔	6GYS	0096	2022-07-07	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	15.69	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.004	0.72	0.0	0.04	15.55	0.00	1.337	22.21	0.00	9.1	90.9	0.0	-1.22	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	6GYU	0097	2022-07-04	2018-07-02	3.0	3.35	—	3.3	0.005	0.94	0.0	0.05	10.80	0.01	1.349	6.06	0.74	6.4	93.4	0.3	-4.30	0.70	0.73	3.36	3.2	0.003	0.71	0.0	0.04	15.33	0.00	2.137	11.76	2.01	6.0	94.0	0.0	-0.05	1.72	0.79	0.84	2.63	18159	2193	6	0	2	0	0	logfile
✔	6GZQ	0101	2022-07-07	2018-07-04	3.28	3.72	—	3.6	0.017	1.33	0.0	0.06	17.34	0.01	1.769	5.59	0.58	15.1	84.4	0.5	-5.41	0.79	0.83	2.31	3.6	0.007	0.87	1.0	0.04	17.36	0.01	1.216	13.91	0.72	13.1	86.8	0.1	-3.60	0.64	0.79	0.83	1.63	144138	5820	53	4540	0	0	0	logfile
✔	6H05	0108	2022-07-07	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.007	1.02	0.0	0.05	15.81	0.01	1.535	23.05	2.30	5.2	94.8	0.0	-1.96	1.64	0.58	0.48	0.74	44544	5664	24	0	0	0	0	logfile
✔	6H25	0128	2022-07-05	2018-07-13	3.8	3.89	—	3.9	0.006	1.10	1.0	0.06	10.98	0.01	1.101	12.97	1.51	5.7	93.9	0.4	-2.77	0.49	0.63	1.51	3.9	0.003	0.72	0.0	0.04	15.89	0.00	2.110	9.92	0.49	5.1	94.9	0.0	-0.02	1.58	0.69	0.81	1.47	22138	2971	12	6	0	0	0	logfile
✔	6H3C	0132	2022-07-08	2018-07-18	3.9	3.99	3.83	3.9	0.020	1.86	0.0	0.10	10.54	0.01	1.965	2.20	0.00	5.3	94.2	0.4	-0.37	0.73	0.68	1.52	3.9	0.006	0.89	0.0	0.04	14.65	0.00	1.714	14.87	0.36	7.1	92.5	0.4	-0.84	1.02	0.75	0.71	1.80	49982	3146	14	0	2	2	24860	logfile

• ← previous
• Page 2 of 392
• next →