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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GX5 | 0077 | 2022-12-11 | 2018-06-26 | 3.2 | 2.51 | 2.94 | 3.2 | 0.017 | 1.20 | 0.0 | 0.11 | 16.09 | 0.01 | 2.596 | 5.96 | 4.94 | 4.3 | 95.7 | 0.0 | -3.50 | 0.85 | 0.88 | 5.60 | 3.2 | 0.005 | 0.77 | 0.0 | 0.05 | 17.37 | 0.00 | 2.112 | 7.56 | 0.82 | 5.4 | 94.6 | 0.0 | -2.84 | 0.66 | 0.83 | 0.86 | 4.48 | 2133 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GY6 | 0088 | 2022-12-14 | 2018-06-28 | 4.0 | 3.98 | — | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 10.55 | 0.01 | 2.234 | 4.84 | 1.08 | 2.6 | 97.4 | 0.0 | -4.40 | 0.90 | 0.84 | — | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.61 | 0.00 | 2.139 | 11.29 | 0.27 | 2.0 | 98.0 | 0.0 | 2.55 | 0.93 | 0.90 | 0.85 | — | 72462 | 9139 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYB | 0089 | 2022-12-12 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.15 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 14.21 | 0.00 | 2.150 | 7.39 | 0.35 | 6.1 | 93.9 | 0.0 | -1.08 | 0.55 | 0.81 | 0.89 | 3.69 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2022-12-21 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.36 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.004 | 0.85 | 0.0 | 0.05 | 14.68 | 0.01 | 2.050 | 23.50 | 0.00 | 7.9 | 91.9 | 0.3 | -1.55 | 1.32 | 0.51 | 0.20 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6GYN | 0093 | 2022-12-13 | 2018-06-30 | 3.4 | 3.66 | 3.52 | 3.6 | 0.008 | 0.85 | 0.0 | 0.05 | 9.32 | 0.01 | 2.273 | 3.32 | 0.00 | 4.7 | 95.3 | 0.0 | -2.56 | 0.66 | 0.83 | 3.51 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.23 | 0.00 | 2.248 | 7.67 | 0.17 | 2.4 | 97.6 | 0.0 | 2.34 | 0.49 | 0.64 | 0.83 | 2.28 | 16932 | 1980 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6GYP | 0095 | 2022-12-13 | 2018-07-01 | 3.6 | 3.70 | — | 3.7 | 0.006 | 0.95 | 0.0 | 0.05 | 10.75 | 0.01 | 2.259 | 4.89 | 0.50 | 7.1 | 92.8 | 0.1 | -4.51 | 0.57 | 0.68 | 2.48 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 15.04 | 0.00 | 2.165 | 12.03 | 0.40 | 5.8 | 94.1 | 0.0 | -0.50 | 0.79 | 0.74 | 0.82 | 1.51 | 17811 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2022-12-20 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.13 | 0.01 | 0.873 | 15.06 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.04 | 15.55 | 0.00 | 1.337 | 21.94 | 0.00 | 9.1 | 90.9 | 0.0 | -1.22 | 1.29 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 6GYU | 0097 | 2022-12-14 | 2018-07-02 | 3.0 | 3.35 | — | 3.3 | 0.005 | 0.94 | 0.0 | 0.05 | 10.80 | 0.01 | 1.349 | 6.08 | 0.74 | 6.4 | 93.4 | 0.3 | -4.30 | 0.70 | 0.73 | 3.36 | 3.2 | 0.004 | 0.72 | 0.0 | 0.04 | 15.34 | 0.00 | 2.127 | 11.44 | 2.26 | 6.0 | 94.0 | 0.0 | -0.06 | 1.72 | 0.79 | 0.84 | 2.65 | 18159 | 2193 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H25 | 0128 | 2022-12-14 | 2018-07-13 | 3.8 | 3.89 | — | 3.9 | 0.006 | 1.10 | 1.0 | 0.06 | 10.98 | 0.01 | 1.101 | 12.97 | 1.51 | 5.7 | 93.9 | 0.4 | -2.77 | 0.49 | 0.63 | 1.51 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.95 | 0.00 | 2.133 | 10.18 | 0.58 | 5.5 | 94.4 | 0.0 | -0.02 | 1.58 | 0.70 | 0.82 | 1.61 | 22138 | 2971 | 12 | 6 | 0 | 0 | 0 | logfile |
✔ | 6H3C | 0132 | 2022-12-22 | 2018-07-18 | 3.9 | 3.99 | 3.83 | 3.9 | 0.020 | 1.86 | 0.0 | 0.10 | 10.54 | 0.01 | 1.965 | 2.20 | 0.00 | 5.3 | 94.2 | 0.4 | -0.37 | 0.73 | 0.68 | 1.52 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 14.71 | 0.00 | 1.787 | 11.83 | 0.36 | 6.6 | 93.0 | 0.3 | -0.63 | 1.03 | 0.75 | 0.71 | 1.78 | 49982 | 3146 | 14 | 0 | 2 | 2 | 24860 | logfile |
✔ | 6H3i | 0133 | 2022-12-14 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | 3.5 | 0.007 | 0.71 | 0.0 | 0.04 | 13.40 | 0.00 | 1.972 | 52.60 | 0.27 | 22.1 | 77.8 | 0.1 | -4.48 | 2.52 | 0.78 | 0.87 | 3.41 | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 6H3J | 0134 | 2022-12-14 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.43 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.39 | 0.00 | 1.860 | 56.32 | 0.32 | 21.3 | 78.7 | 0.0 | -4.95 | 2.68 | 0.78 | 0.86 | 2.86 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 6H3L | 0135 | 2022-12-16 | 2018-07-19 | 4.2 | 4.88 | — | 3.9 | 0.015 | 1.70 | 0.0 | 0.08 | 11.55 | 0.01 | 2.124 | 6.00 | 0.06 | 7.7 | 91.4 | 0.9 | -1.43 | 0.92 | 0.69 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 13.29 | 0.00 | 1.868 | 17.06 | 0.00 | 6.2 | 93.6 | 0.2 | -2.05 | 1.35 | 0.91 | 0.76 | — | 29319 | 1881 | 3 | 0 | 0 | 0 | 14388 | logfile |
✔ | 6H3N | 0136 | 2022-12-16 | 2018-07-19 | 3.25 | 3.45 | — | 3.4 | 0.015 | 1.52 | 0.0 | 0.07 | 10.78 | 0.01 | 2.457 | 2.39 | 0.00 | 4.7 | 94.6 | 0.7 | -0.43 | 0.77 | 0.79 | 4.55 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.86 | 0.00 | 1.906 | 5.73 | 0.32 | 4.1 | 95.9 | 0.0 | -0.12 | 1.46 | 0.71 | 0.76 | 4.08 | 29319 | 1881 | 3 | 0 | 0 | 0 | 14388 | logfile |
✔ | 6H5i | 0140 | 2022-12-11 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.15 | 0.00 | 2.076 | 14.87 | 0.34 | 4.1 | 95.9 | 0.0 | 1.09 | 1.96 | 0.38 | 0.25 | 0.14 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5Q | 0141 | 2022-12-22 | 2018-07-25 | 3.3 | 3.43 | — | 3.4 | 0.010 | 1.14 | 0.0 | 0.06 | 11.79 | 0.01 | 1.628 | 11.72 | 1.54 | 4.0 | 96.0 | 0.0 | -4.31 | 0.46 | 0.87 | 4.00 | 3.4 | 0.006 | 0.72 | 0.0 | 0.04 | 14.91 | 0.00 | 2.122 | 11.78 | 0.64 | 3.9 | 96.1 | 0.0 | 0.25 | 0.61 | 0.49 | 0.90 | 2.87 | 46650 | 5715 | 30 | 90 | 0 | 0 | 0 | logfile |
✔ | 6H5S | 0142 | 2022-12-21 | 2018-07-25 | 3.3 | 3.45 | — | 3.4 | 0.010 | 1.12 | 0.0 | 0.06 | 10.77 | 0.01 | 1.817 | 7.18 | 0.65 | 7.3 | 92.7 | 0.0 | -5.39 | 0.51 | 0.88 | 4.96 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.04 | 0.00 | 2.116 | 8.57 | 0.30 | 3.3 | 96.7 | 0.0 | -0.13 | 0.63 | 0.53 | 0.90 | 3.33 | 44700 | 5445 | 30 | 90 | 0 | 0 | 0 | logfile |
✔ | 6H61 | 0143 | 2022-12-12 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 9.67 | 0.00 | 2.107 | 14.83 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 12.00 | 0.00 | 2.087 | 22.68 | 0.00 | 6.1 | 93.9 | 0.0 | 0.63 | 1.83 | 0.63 | 0.77 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |
✔ | 6H66 | 0145 | 2022-12-12 | 2018-07-26 | 4.16 | 4.23 | 3.99 | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 9.41 | 0.01 | 2.070 | 15.50 | 0.17 | 10.4 | 89.4 | 0.2 | -3.09 | 0.61 | 0.76 | — | 4.2 | 0.002 | 0.63 | 0.0 | 0.04 | 11.99 | 0.00 | 2.063 | 21.64 | 0.00 | 7.8 | 92.2 | 0.0 | 0.56 | 1.86 | 0.62 | 0.77 | — | 10017 | 667 | 4 | 30 | 1 | 0 | 4120 | logfile |