Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HQE	0252	2023-09-29	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.77	0.0	0.04	11.97	0.01	2.226	19.13	0.00	2.7	97.3	0.0	1.18	1.68	0.64	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	6HRA	0257	2023-09-30	2018-09-26	3.7	3.89	3.68	3.8	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.64	0.18	7.4	92.6	0.0	-5.34	0.70	0.83	2.52	3.8	0.003	0.72	0.0	0.04	13.93	0.00	2.089	12.23	1.06	4.9	95.1	0.0	-0.84	1.64	0.71	0.85	1.41	10818	1450	5	0	3	0	0	logfile
✔	6HRB	0258	2023-09-30	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.73	0.0	0.04	13.52	0.00	2.051	13.69	0.26	3.4	96.6	0.0	-0.23	1.28	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6HRE	0259	2023-09-27	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.005	0.88	0.0	0.05	17.64	0.00	2.152	9.22	0.25	8.4	91.6	0.0	-3.58	0.82	0.29	0.78	3.78	3522	462	6	0	0	0	0	logfile
✔	6HRF	0260	2023-09-27	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.52	0.00	2.196	8.66	0.50	6.9	93.1	0.0	-3.41	3.56	0.37	0.78	3.67	3522	462	6	0	0	0	0	logfile
✔	6HS7	0264	2023-09-27	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.05	0.00	2.131	10.59	0.07	7.9	92.1	0.0	-2.30	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6HU7	0273	2023-09-28	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.61	0.0	0.04	15.33	0.00	2.301	9.54	2.19	2.2	97.5	0.3	2.86	1.61	0.53	0.87	3.58	4890	609	7	0	0	0	0	logfile
✔	6HUD	0274	2023-09-27	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.72	0.0	0.04	12.84	0.00	2.150	15.41	0.61	3.3	96.7	0.0	-5.02	1.49	0.59	0.78	—	2905	385	5	0	0	0	0	logfile
✔	6HV8	0287	2023-09-29	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.78	0.00	2.083	14.58	0.00	14.2	85.8	0.0	-2.84	1.02	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6i1X	0326	2023-09-28	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	6i1Y	0327	2023-09-28	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	75.63	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.004	0.72	0.0	0.05	16.10	0.01	2.139	15.53	0.48	6.4	93.3	0.2	-1.66	1.47	0.77	0.79	1.57	56520	7440	15	0	0	0	0	logfile
✔	6i2i	0331	2023-09-28	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	12.38	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.7	0.004	0.74	0.0	0.05	15.73	0.00	1.880	15.21	0.69	5.1	94.9	0.0	-1.91	0.88	0.76	0.75	1.76	6830	856	4	0	5	0	0	logfile
✔	6N3C	0334	2023-09-27	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.005	0.71	0.0	0.04	15.41	0.00	2.401	13.69	1.32	11.3	88.7	0.0	-3.70	2.40	0.52	0.83	3.98	4260	640	20	0	0	0	0	logfile
✔	6N3Q	0336	2023-09-29	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.005	0.80	0.0	0.04	15.42	0.00	2.175	12.10	0.86	4.4	95.6	0.0	0.89	2.71	0.69	0.81	1.66	9931	1290	6	0	0	0	0	logfile
✔	6N4B	0339	2023-09-29	2018-11-18	3.0	3.84	—	3.8	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.003	0.66	0.0	0.04	15.02	0.00	2.209	6.16	2.28	4.1	95.9	0.0	-0.82	0.67	0.51	0.79	2.88	8453	1121	6	0	3	0	0	logfile
✔	6N52	0346	2023-09-30	2018-11-20	4.0	4.42	—	3.9	0.004	0.70	0.0	0.05	8.42	0.01	2.328	4.22	0.00	4.1	95.9	0.0	-4.16	0.72	0.78	—	3.9	0.004	0.69	0.0	0.04	11.54	0.00	2.181	12.75	0.29	6.6	93.4	0.0	-0.61	2.40	0.73	0.81	—	11108	1548	4	0	4	0	0	logfile
✔	6N7i	0357	2023-09-30	2018-11-27	3.2	3.34	—	3.3	0.005	0.91	0.0	0.06	14.82	0.02	2.157	2.64	0.53	3.9	96.1	0.0	-3.45	0.69	0.75	2.35	3.3	0.003	0.66	0.0	0.04	17.64	0.00	1.961	8.93	0.62	4.1	95.9	0.0	-0.76	1.31	0.73	0.81	2.15	10833	1350	12	15	8	1	0	logfile
✔	6N7W	0365	2023-09-28	2018-11-28	4.5	4.41	—	4.1	0.006	0.75	0.0	0.05	19.17	0.02	2.125	3.09	0.46	4.4	95.5	0.1	-2.55	0.85	0.81	—	4.1	0.003	0.59	0.0	0.04	19.46	0.00	1.980	11.90	0.00	4.1	95.9	0.0	1.33	1.91	0.86	0.83	—	7837	808	5	70	2	0	0	logfile
✔	6N9U	0379	2023-09-29	2018-12-04	3.7	3.80	—	3.7	0.007	0.84	0.0	0.06	12.72	0.01	2.205	3.66	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	3.7	0.003	0.62	0.0	0.04	16.58	0.00	1.949	7.03	0.34	4.4	95.6	0.0	-1.69	1.14	0.78	0.84	1.86	8822	1063	7	18	4	0	0	logfile
✔	6N9Y	0383	2023-09-27	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.68	0.0	0.04	15.57	0.00	2.156	13.06	0.00	7.8	92.2	0.0	-0.84	1.77	0.40	0.79	—	4527	552	1	0	0	0	0	logfile

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