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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GWT | 0076 | 2024-03-27 | 2018-06-25 | 3.8 | 4.53 | — | 4.2 | 0.004 | 0.84 | 5.0 | 0.04 | 22.39 | 0.01 | 1.272 | 6.02 | 0.19 | 8.2 | 91.3 | 0.5 | -4.05 | 0.85 | 0.83 | 0.58 | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 23.43 | 0.01 | 1.975 | 25.61 | 6.83 | 11.0 | 88.6 | 0.4 | -1.97 | 1.77 | 0.87 | 0.88 | 0.79 | 151484 | 6670 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 6GX5 | 0077 | 2024-03-10 | 2018-06-26 | 3.2 | 2.51 | 2.94 | 3.2 | 0.017 | 1.20 | 0.0 | 0.11 | 16.09 | 0.01 | 2.596 | 5.96 | 4.94 | 4.3 | 95.7 | 0.0 | -3.50 | 0.85 | 0.88 | 5.60 | 3.2 | 0.004 | 0.71 | 0.0 | 0.05 | 17.59 | 0.00 | 2.370 | 5.96 | 2.88 | 5.8 | 94.2 | 0.0 | -2.79 | 0.61 | 0.83 | 0.86 | 5.18 | 2133 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GXM | 0080 | 2024-03-27 | 2018-06-27 | 3.8 | 4.73 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 22.40 | 0.01 | 1.322 | 6.07 | 0.20 | 8.4 | 91.2 | 0.4 | -4.08 | 0.85 | 0.83 | 0.31 | 4.3 | 0.005 | 0.73 | 0.0 | 0.04 | 23.42 | 0.01 | 2.033 | 27.01 | 5.68 | 10.3 | 89.4 | 0.2 | -1.79 | 1.78 | 0.87 | 0.87 | 0.41 | 151394 | 6643 | 59 | 4639 | 1 | 0 | 0 | logfile |
✔ | 6GXN | 0081 | 2024-03-27 | 2018-06-27 | 3.9 | 4.79 | — | 4.3 | 0.003 | 0.80 | 4.0 | 0.04 | 22.41 | 0.01 | 1.098 | 6.08 | 0.17 | 8.1 | 91.4 | 0.5 | -4.05 | 0.86 | 0.83 | 0.48 | 4.3 | 0.007 | 0.79 | 2.0 | 0.04 | 23.58 | 0.01 | 1.518 | 32.86 | 7.73 | 10.7 | 89.0 | 0.3 | -1.99 | 1.82 | 0.88 | 0.88 | 0.70 | 151860 | 6741 | 59 | 4638 | 1 | 0 | 0 | logfile |
✔ | 6GXo | 0082 | 2024-03-27 | 2018-06-27 | 3.9 | 4.77 | — | 4.3 | 0.004 | 0.82 | 4.0 | 0.04 | 22.42 | 0.01 | 0.695 | 7.13 | 0.15 | 8.2 | 91.3 | 0.5 | -3.98 | 0.85 | 0.83 | 0.32 | 4.3 | 0.003 | 0.69 | 0.0 | 0.03 | 23.42 | 0.00 | 2.039 | 21.91 | 5.57 | 9.4 | 90.3 | 0.2 | -1.77 | 1.78 | 0.87 | 0.87 | 0.66 | 151479 | 6643 | 59 | 4643 | 1 | 0 | 0 | logfile |
✔ | 6GXP | 0083 | 2024-03-24 | 2018-06-27 | 4.4 | 5.60 | — | 5.1 | 0.003 | 0.80 | 6.0 | 0.04 | 22.51 | 0.01 | 1.608 | 5.45 | 0.27 | 8.3 | 91.2 | 0.5 | -4.12 | 0.84 | 0.79 | — | 5.1 | 0.003 | 0.63 | 0.0 | 0.03 | 23.12 | 0.01 | 2.043 | 25.01 | 0.08 | 9.7 | 90.1 | 0.2 | -1.86 | 1.92 | 0.87 | 0.85 | — | 147637 | 6392 | 56 | 4555 | 1 | 0 | 0 | logfile |
✔ | 6GY6 | 0088 | 2024-03-16 | 2018-06-28 | 4.0 | 3.98 | — | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 10.55 | 0.01 | 2.234 | 4.84 | 1.08 | 2.6 | 97.4 | 0.0 | -4.40 | 0.90 | 0.84 | — | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.48 | 0.00 | 2.142 | 10.69 | 1.61 | 1.8 | 98.2 | 0.0 | 2.84 | 0.92 | 0.90 | 0.85 | — | 72462 | 9139 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYB | 0089 | 2024-03-11 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.03 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.62 | 0.0 | 0.04 | 14.18 | 0.00 | 2.154 | 7.14 | 2.87 | 5.9 | 94.1 | 0.0 | -0.97 | 0.54 | 0.81 | 0.89 | 3.72 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2024-03-24 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.78 | 0.00 | 0.860 | 9.27 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.5 | 0.003 | 0.80 | 0.0 | 0.05 | 14.75 | 0.01 | 2.093 | 18.95 | 0.00 | 5.4 | 94.4 | 0.3 | -1.55 | 1.31 | 0.51 | 0.19 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6GYN | 0093 | 2024-03-17 | 2018-06-30 | 3.4 | 3.66 | 3.52 | 3.6 | 0.008 | 0.85 | 0.0 | 0.05 | 10.50 | 0.01 | 2.273 | 3.08 | 0.00 | 4.7 | 95.3 | 0.0 | -2.56 | 0.66 | 0.83 | 3.51 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 13.38 | 0.00 | 2.267 | 6.93 | 0.87 | 3.0 | 97.0 | 0.0 | 2.46 | 0.50 | 0.64 | 0.83 | 2.41 | 16932 | 1980 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6GYP | 0095 | 2024-03-17 | 2018-07-01 | 3.6 | 3.70 | — | 3.7 | 0.006 | 0.95 | 0.0 | 0.05 | 10.75 | 0.01 | 2.259 | 4.86 | 0.50 | 7.1 | 92.8 | 0.1 | -4.51 | 0.57 | 0.68 | 2.48 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.160 | 11.89 | 3.11 | 5.9 | 94.0 | 0.0 | -0.49 | 0.74 | 0.74 | 0.82 | 1.47 | 17811 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2024-03-23 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.42 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 15.76 | 0.00 | 1.219 | 24.37 | 0.00 | 9.6 | 90.3 | 0.1 | -1.35 | 1.28 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 6GYU | 0097 | 2024-03-17 | 2018-07-02 | 3.0 | 3.35 | — | 3.3 | 0.005 | 0.94 | 0.0 | 0.05 | 10.80 | 0.01 | 1.349 | 6.02 | 0.74 | 6.4 | 93.4 | 0.3 | -4.30 | 0.70 | 0.73 | 3.36 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.00 | 0.00 | 2.179 | 11.02 | 1.67 | 5.8 | 94.1 | 0.1 | 0.19 | 1.69 | 0.79 | 0.84 | 2.54 | 18159 | 2193 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6GZQ | 0101 | 2024-03-21 | 2018-07-04 | 3.28 | 3.72 | — | 3.6 | 0.017 | 1.33 | 0.0 | 0.06 | 24.18 | 0.01 | 1.769 | 5.57 | 0.58 | 15.1 | 84.4 | 0.5 | -5.41 | 0.79 | 0.83 | 2.31 | 3.6 | 0.005 | 0.71 | 1.0 | 0.03 | 23.99 | 0.00 | 1.210 | 10.82 | 5.00 | 9.5 | 90.5 | 0.1 | -3.23 | 0.66 | 0.78 | 0.82 | 1.62 | 144138 | 5820 | 53 | 4540 | 0 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2024-03-24 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.80 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.05 | 15.34 | 0.01 | 2.128 | 15.29 | 2.09 | 4.2 | 95.8 | 0.0 | -1.19 | 1.59 | 0.57 | 0.46 | 0.82 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SCT | 0126 | 2024-03-24 | 2019-07-25 | 4.69 | 4.38 | 4.14 | 4.0 | 0.004 | 0.75 | 3.0 | 0.04 | 15.13 | 0.00 | 2.104 | 6.11 | 0.27 | 7.5 | 92.4 | 0.1 | -3.74 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40680 | 4947 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H25 | 0128 | 2024-03-18 | 2018-07-13 | 3.8 | 3.89 | — | 3.9 | 0.006 | 1.10 | 1.0 | 0.06 | 11.14 | 0.01 | 1.101 | 12.90 | 1.51 | 5.7 | 93.9 | 0.4 | -2.77 | 0.49 | 0.63 | 1.51 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.16 | 0.00 | 2.183 | 10.31 | 5.38 | 5.5 | 94.5 | 0.0 | -0.16 | 0.76 | 0.71 | 0.82 | 1.54 | 22138 | 2971 | 12 | 6 | 0 | 0 | 0 | logfile |
✔ | 6H3C | 0132 | 2024-03-25 | 2018-07-18 | 3.9 | 3.99 | 3.83 | 3.9 | 0.020 | 1.86 | 0.0 | 0.10 | 10.54 | 0.01 | 1.965 | 1.76 | 0.00 | 5.3 | 94.2 | 0.4 | -0.37 | 0.73 | 0.68 | 1.52 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 14.92 | 0.00 | 1.722 | 12.93 | 2.31 | 7.4 | 92.3 | 0.3 | -0.77 | 0.99 | 0.75 | 0.71 | 1.73 | 49982 | 3146 | 14 | 0 | 2 | 2 | 24860 | logfile |
✔ | 6H3i | 0133 | 2024-03-18 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | 3.5 | 0.004 | 0.61 | 0.0 | 0.04 | 13.12 | 0.00 | 2.021 | 50.15 | 1.95 | 17.5 | 82.4 | 0.1 | -3.99 | 2.52 | 0.78 | 0.87 | 3.27 | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✔ | 6H3J | 0134 | 2024-03-18 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.38 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.62 | 0.00 | 1.858 | 56.90 | 3.87 | 24.3 | 75.7 | 0.0 | -5.32 | 2.68 | 0.78 | 0.87 | 2.95 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |