Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GX5	0077	2022-12-11	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.005	0.77	0.0	0.05	17.37	0.00	2.112	7.56	0.82	5.4	94.6	0.0	-2.84	0.66	0.83	0.86	4.48	2133	282	3	0	0	0	0	logfile
✔	6GY6	0088	2022-12-14	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.003	0.65	0.0	0.04	14.61	0.00	2.139	11.29	0.27	2.0	98.0	0.0	2.55	0.93	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6GYB	0089	2022-12-12	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.15	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.005	0.63	0.0	0.04	14.21	0.00	2.150	7.39	0.35	6.1	93.9	0.0	-1.08	0.55	0.81	0.89	3.69	59318	7546	42	0	0	0	0	logfile
✔	6GYL	0091	2022-12-21	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.36	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.004	0.85	0.0	0.05	14.68	0.01	2.050	23.50	0.00	7.9	91.9	0.3	-1.55	1.32	0.51	0.20	—	43409	5250	30	112	11	0	0	logfile
✔	6GYN	0093	2022-12-13	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.32	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.54	0.0	0.04	13.23	0.00	2.248	7.67	0.17	2.4	97.6	0.0	2.34	0.49	0.64	0.83	2.28	16932	1980	8	0	36	0	0	logfile
✔	6GYP	0095	2022-12-13	2018-07-01	3.6	3.70	—	3.7	0.006	0.95	0.0	0.05	10.75	0.01	2.259	4.89	0.50	7.1	92.8	0.1	-4.51	0.57	0.68	2.48	3.7	0.004	0.70	0.0	0.04	15.04	0.00	2.165	12.03	0.40	5.8	94.1	0.0	-0.50	0.79	0.74	0.82	1.51	17811	2148	6	0	0	0	0	logfile
✔	6GYS	0096	2022-12-20	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	15.06	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.004	0.72	0.0	0.04	15.55	0.00	1.337	21.94	0.00	9.1	90.9	0.0	-1.22	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	6GYU	0097	2022-12-14	2018-07-02	3.0	3.35	—	3.3	0.005	0.94	0.0	0.05	10.80	0.01	1.349	6.08	0.74	6.4	93.4	0.3	-4.30	0.70	0.73	3.36	3.2	0.004	0.72	0.0	0.04	15.34	0.00	2.127	11.44	2.26	6.0	94.0	0.0	-0.06	1.72	0.79	0.84	2.65	18159	2193	6	0	2	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	6H25	0128	2022-12-14	2018-07-13	3.8	3.89	—	3.9	0.006	1.10	1.0	0.06	10.98	0.01	1.101	12.97	1.51	5.7	93.9	0.4	-2.77	0.49	0.63	1.51	3.9	0.003	0.71	0.0	0.04	15.95	0.00	2.133	10.18	0.58	5.5	94.4	0.0	-0.02	1.58	0.70	0.82	1.61	22138	2971	12	6	0	0	0	logfile
✔	6H3C	0132	2022-12-22	2018-07-18	3.9	3.99	3.83	3.9	0.020	1.86	0.0	0.10	10.54	0.01	1.965	2.20	0.00	5.3	94.2	0.4	-0.37	0.73	0.68	1.52	3.9	0.003	0.66	0.0	0.04	14.71	0.00	1.787	11.83	0.36	6.6	93.0	0.3	-0.63	1.03	0.75	0.71	1.78	49982	3146	14	0	2	2	24860	logfile
✔	6H3i	0133	2022-12-14	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.007	0.71	0.0	0.04	13.40	0.00	1.972	52.60	0.27	22.1	77.8	0.1	-4.48	2.52	0.78	0.87	3.41	20599	2597	3	0	0	0	53	logfile
✔	6H3J	0134	2022-12-14	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.32	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	6H3L	0135	2022-12-16	2018-07-19	4.2	4.88	—	3.9	0.015	1.70	0.0	0.08	11.55	0.01	2.124	6.00	0.06	7.7	91.4	0.9	-1.43	0.92	0.69	—	3.7	0.003	0.63	0.0	0.04	13.29	0.00	1.868	17.06	0.00	6.2	93.6	0.2	-2.05	1.35	0.91	0.76	—	29319	1881	3	0	0	0	14388	logfile
✔	6H3N	0136	2022-12-16	2018-07-19	3.25	3.45	—	3.4	0.015	1.52	0.0	0.07	10.78	0.01	2.457	2.39	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.003	0.58	0.0	0.04	14.86	0.00	1.906	5.73	0.32	4.1	95.9	0.0	-0.12	1.46	0.71	0.76	4.08	29319	1881	3	0	0	0	14388	logfile
✔	6H5i	0140	2022-12-11	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	15.15	0.00	2.076	14.87	0.34	4.1	95.9	0.0	1.09	1.96	0.38	0.25	0.14	43900	5392	26	0	0	0	0	logfile
✔	6H5Q	0141	2022-12-22	2018-07-25	3.3	3.43	—	3.4	0.010	1.14	0.0	0.06	11.79	0.01	1.628	11.72	1.54	4.0	96.0	0.0	-4.31	0.46	0.87	4.00	3.4	0.006	0.72	0.0	0.04	14.91	0.00	2.122	11.78	0.64	3.9	96.1	0.0	0.25	0.61	0.49	0.90	2.87	46650	5715	30	90	0	0	0	logfile
✔	6H5S	0142	2022-12-21	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	10.77	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.003	0.61	0.0	0.04	15.04	0.00	2.116	8.57	0.30	3.3	96.7	0.0	-0.13	0.63	0.53	0.90	3.33	44700	5445	30	90	0	0	0	logfile
✔	6H61	0143	2022-12-12	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.83	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.002	0.57	0.0	0.04	12.00	0.00	2.087	22.68	0.00	6.1	93.9	0.0	0.63	1.83	0.63	0.77	—	9912	660	4	30	1	0	4057	logfile
✔	6H66	0145	2022-12-12	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.50	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	11.99	0.00	2.063	21.64	0.00	7.8	92.2	0.0	0.56	1.86	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile

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