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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HQE | 0252 | 2023-09-29 | 2018-09-24 | 4.4 | 4.34 | — | 4.4 | 0.009 | 1.25 | 0.0 | 0.06 | 9.67 | 0.01 | 2.307 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -7.05 | 0.65 | 0.85 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.04 | 11.97 | 0.01 | 2.226 | 19.13 | 0.00 | 2.7 | 97.3 | 0.0 | 1.18 | 1.68 | 0.64 | 0.83 | — | 9360 | 1196 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HRA | 0257 | 2023-09-30 | 2018-09-26 | 3.7 | 3.89 | 3.68 | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 9.85 | 0.01 | 2.227 | 6.64 | 0.18 | 7.4 | 92.6 | 0.0 | -5.34 | 0.70 | 0.83 | 2.52 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 13.93 | 0.00 | 2.089 | 12.23 | 1.06 | 4.9 | 95.1 | 0.0 | -0.84 | 1.64 | 0.71 | 0.85 | 1.41 | 10818 | 1450 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6HRB | 0258 | 2023-09-30 | 2018-09-26 | 4.0 | 4.20 | 3.96 | 4.0 | 0.008 | 0.96 | 0.0 | 0.05 | 9.28 | 0.01 | 2.186 | 6.75 | 0.26 | 7.2 | 92.8 | 0.0 | -4.97 | 0.74 | 0.84 | — | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.52 | 0.00 | 2.051 | 13.69 | 0.26 | 3.4 | 96.6 | 0.0 | -0.23 | 1.28 | 0.74 | 0.84 | — | 10787 | 1447 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6HRE | 0259 | 2023-09-27 | 2018-09-26 | 3.2 | 2.74 | 2.87 | 3.3 | 0.019 | 1.47 | 0.0 | 0.11 | 13.34 | 0.01 | 2.474 | 6.01 | 0.00 | 12.0 | 88.0 | 0.0 | -4.17 | 0.32 | 0.80 | 4.40 | 2.8 | 0.005 | 0.88 | 0.0 | 0.05 | 17.64 | 0.00 | 2.152 | 9.22 | 0.25 | 8.4 | 91.6 | 0.0 | -3.58 | 0.82 | 0.29 | 0.78 | 3.78 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2023-09-27 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 7.82 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 16.52 | 0.00 | 2.196 | 8.66 | 0.50 | 6.9 | 93.1 | 0.0 | -3.41 | 3.56 | 0.37 | 0.78 | 3.67 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HS7 | 0264 | 2023-09-27 | 2018-09-28 | 4.6 | 3.02 | 4.27 | 4.3 | 0.006 | 1.00 | 1.0 | 0.05 | 14.59 | 0.01 | 2.156 | 6.39 | 0.04 | 10.5 | 89.5 | 0.0 | -5.02 | 0.77 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 14.05 | 0.00 | 2.131 | 10.59 | 0.07 | 7.9 | 92.1 | 0.0 | -2.30 | 0.94 | 0.79 | 0.71 | — | 52890 | 6905 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HU7 | 0273 | 2023-09-28 | 2018-10-05 | 2.8 | 2.82 | 2.83 | 2.9 | 0.008 | 0.78 | 0.0 | 0.05 | 9.81 | 0.01 | 2.130 | 10.26 | 0.36 | 2.7 | 96.8 | 0.5 | -3.47 | 0.49 | 0.84 | 4.61 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 15.33 | 0.00 | 2.301 | 9.54 | 2.19 | 2.2 | 97.5 | 0.3 | 2.86 | 1.61 | 0.53 | 0.87 | 3.58 | 4890 | 609 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HUD | 0274 | 2023-09-27 | 2018-10-06 | 4.0 | 4.06 | — | 4.3 | 0.007 | 1.12 | 0.0 | 0.07 | 8.28 | 0.01 | 2.216 | 5.62 | 0.00 | 8.2 | 91.8 | 0.0 | -5.06 | 0.59 | 0.76 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.84 | 0.00 | 2.150 | 15.41 | 0.61 | 3.3 | 96.7 | 0.0 | -5.02 | 1.49 | 0.59 | 0.78 | — | 2905 | 385 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2023-09-29 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 8.97 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.05 | 12.78 | 0.00 | 2.083 | 14.58 | 0.00 | 14.2 | 85.8 | 0.0 | -2.84 | 1.02 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6i1X | 0326 | 2023-09-28 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 16.37 | 0.00 | 2.134 | 17.07 | 0.28 | 4.8 | 95.0 | 0.2 | -0.88 | 1.06 | 0.65 | 0.60 | 0.83 | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i1Y | 0327 | 2023-09-28 | 2018-10-30 | 3.4 | 3.52 | — | 3.4 | 0.015 | 2.01 | 16.0 | 0.10 | 13.31 | 0.02 | 1.301 | 75.63 | 0.72 | 10.9 | 85.8 | 3.3 | -5.20 | 0.79 | 0.83 | 1.55 | 3.4 | 0.004 | 0.72 | 0.0 | 0.05 | 16.10 | 0.01 | 2.139 | 15.53 | 0.48 | 6.4 | 93.3 | 0.2 | -1.66 | 1.47 | 0.77 | 0.79 | 1.57 | 56520 | 7440 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i2i | 0331 | 2023-09-28 | 2018-11-01 | 3.6 | 3.72 | — | 3.7 | 0.009 | 1.17 | 0.0 | 0.06 | 12.38 | 0.01 | 2.019 | 7.46 | 0.28 | 7.1 | 92.9 | 0.0 | -5.22 | 0.74 | 0.74 | 2.16 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 15.73 | 0.00 | 1.880 | 15.21 | 0.69 | 5.1 | 94.9 | 0.0 | -1.91 | 0.88 | 0.76 | 0.75 | 1.76 | 6830 | 856 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6N3C | 0334 | 2023-09-27 | 2018-11-14 | 3.3 | 3.53 | — | 3.5 | 0.009 | 1.31 | 0.0 | 0.07 | 14.00 | 0.00 | 2.387 | 18.47 | 0.00 | 11.5 | 88.5 | 0.0 | -5.01 | 0.52 | 0.83 | 4.06 | 3.5 | 0.005 | 0.71 | 0.0 | 0.04 | 15.41 | 0.00 | 2.401 | 13.69 | 1.32 | 11.3 | 88.7 | 0.0 | -3.70 | 2.40 | 0.52 | 0.83 | 3.98 | 4260 | 640 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3Q | 0336 | 2023-09-29 | 2018-11-16 | 3.68 | 4.01 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 10.91 | 0.01 | 2.308 | 4.48 | 0.67 | 3.2 | 96.8 | 0.0 | -3.32 | 0.63 | 0.78 | 2.20 | 4.0 | 0.005 | 0.80 | 0.0 | 0.04 | 15.42 | 0.00 | 2.175 | 12.10 | 0.86 | 4.4 | 95.6 | 0.0 | 0.89 | 2.71 | 0.69 | 0.81 | 1.66 | 9931 | 1290 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N4B | 0339 | 2023-09-29 | 2018-11-18 | 3.0 | 3.84 | — | 3.8 | 0.011 | 1.40 | 4.0 | 0.09 | 9.55 | 0.01 | 1.855 | 20.11 | 0.84 | 2.7 | 97.3 | 0.0 | -2.27 | 0.55 | 0.81 | 3.06 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 15.02 | 0.00 | 2.209 | 6.16 | 2.28 | 4.1 | 95.9 | 0.0 | -0.82 | 0.67 | 0.51 | 0.79 | 2.88 | 8453 | 1121 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6N52 | 0346 | 2023-09-30 | 2018-11-20 | 4.0 | 4.42 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 8.42 | 0.01 | 2.328 | 4.22 | 0.00 | 4.1 | 95.9 | 0.0 | -4.16 | 0.72 | 0.78 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 11.54 | 0.00 | 2.181 | 12.75 | 0.29 | 6.6 | 93.4 | 0.0 | -0.61 | 2.40 | 0.73 | 0.81 | — | 11108 | 1548 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6N7i | 0357 | 2023-09-30 | 2018-11-27 | 3.2 | 3.34 | — | 3.3 | 0.005 | 0.91 | 0.0 | 0.06 | 14.82 | 0.02 | 2.157 | 2.64 | 0.53 | 3.9 | 96.1 | 0.0 | -3.45 | 0.69 | 0.75 | 2.35 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 17.64 | 0.00 | 1.961 | 8.93 | 0.62 | 4.1 | 95.9 | 0.0 | -0.76 | 1.31 | 0.73 | 0.81 | 2.15 | 10833 | 1350 | 12 | 15 | 8 | 1 | 0 | logfile |
✔ | 6N7W | 0365 | 2023-09-28 | 2018-11-28 | 4.5 | 4.41 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.05 | 19.17 | 0.02 | 2.125 | 3.09 | 0.46 | 4.4 | 95.5 | 0.1 | -2.55 | 0.85 | 0.81 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 19.46 | 0.00 | 1.980 | 11.90 | 0.00 | 4.1 | 95.9 | 0.0 | 1.33 | 1.91 | 0.86 | 0.83 | — | 7837 | 808 | 5 | 70 | 2 | 0 | 0 | logfile |
✔ | 6N9U | 0379 | 2023-09-29 | 2018-12-04 | 3.7 | 3.80 | — | 3.7 | 0.007 | 0.84 | 0.0 | 0.06 | 12.72 | 0.01 | 2.205 | 3.66 | 0.34 | 5.3 | 94.7 | 0.0 | -4.67 | 0.75 | 0.82 | 3.31 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.58 | 0.00 | 1.949 | 7.03 | 0.34 | 4.4 | 95.6 | 0.0 | -1.69 | 1.14 | 0.78 | 0.84 | 1.86 | 8822 | 1063 | 7 | 18 | 4 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2023-09-27 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 4.80 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.57 | 0.00 | 2.156 | 13.06 | 0.00 | 7.8 | 92.2 | 0.0 | -0.84 | 1.77 | 0.40 | 0.79 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |