Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o6A	0631	2021-09-04	2019-03-05	3.6	3.69	—	3.6	0.012	1.26	0.0	0.16	15.94	0.01	1.986	6.00	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.003	0.74	0.0	0.04	17.47	0.00	2.191	13.69	0.58	5.8	94.2	0.0	-0.66	2.54	0.62	0.77	1.18	27220	3312	8	0	8	0	0	logfile
✔	6KZ4	0785	2021-09-03	2019-09-23	3.0	3.18	—	3.1	0.005	0.64	0.0	0.05	13.57	0.00	2.170	10.07	0.00	9.5	90.5	0.0	-4.51	0.80	0.86	2.99	3.1	0.003	0.62	0.0	0.05	15.62	0.00	2.152	9.81	2.05	8.7	91.3	0.0	-2.25	1.43	0.79	0.86	3.00	16698	2196	6	0	0	0	0	logfile
✔	5G04	3385	2021-09-03	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.35	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.007	0.88	0.0	0.04	18.13	0.01	2.040	18.24	0.32	5.7	93.8	0.5	0.14	1.77	0.83	0.76	0.66	65481	8322	22	0	3	0	0	logfile
✔	5Y4o	6805	2021-09-03	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	77.29	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.5	0.003	0.77	0.0	0.04	17.39	0.00	2.034	13.24	0.82	6.7	92.7	0.6	-0.16	1.94	0.59	0.73	1.29	12341	1561	7	0	0	0	0	logfile
✔	6K7N	9942	2021-09-03	2019-06-07	2.84	2.94	2.68	2.9	0.016	1.45	0.0	0.14	15.74	0.01	2.046	6.84	0.44	8.0	91.9	0.1	-3.74	0.61	0.85	3.92	2.9	0.003	0.65	0.0	0.04	16.72	0.00	1.994	10.72	1.92	5.7	94.3	0.0	-0.66	0.52	0.68	0.88	3.50	10544	1308	4	0	8	0	0	logfile
✔	5NV3	3699	2021-09-06	2017-05-03	3.39	3.43	—	3.4	0.007	1.21	2.0	0.07	14.58	0.00	2.164	3.27	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.008	0.91	0.0	0.04	16.56	0.00	2.070	8.47	0.23	2.8	97.2	0.0	-0.11	1.64	0.68	0.77	4.10	37816	4768	24	0	16	0	0	logfile
✔	5SZS	8331	2021-09-05	2016-08-15	3.4	3.57	—	3.5	0.023	3.00	3.0	0.20	11.39	0.01	1.476	3.30	0.68	5.7	93.7	0.6	-0.27	0.85	0.83	2.56	3.5	0.004	0.64	0.0	0.05	13.17	0.00	2.108	5.68	0.42	5.2	94.5	0.3	0.09	0.75	0.86	0.86	2.70	30306	3531	6	0	222	0	0	logfile
✔	6U9F	20696	2021-09-04	2019-09-08	4.35	4.41	—	4.3	0.009	1.10	0.0	0.06	9.47	0.01	2.193	7.59	0.15	13.4	86.6	0.0	-4.71	0.78	0.78	—	4.3	0.002	0.65	0.0	0.05	12.03	0.00	2.096	12.22	0.00	8.5	91.5	0.0	-2.05	0.90	0.79	0.79	—	19179	2550	6	0	0	0	0	logfile
✔	6KLX	0721	2021-09-04	2019-07-30	2.9	3.09	—	3.0	0.008	0.69	0.0	0.05	13.80	0.01	2.177	6.64	0.13	6.8	93.2	0.0	-3.59	0.73	0.85	4.20	3.0	0.004	0.55	0.0	0.04	16.01	0.00	2.173	6.69	1.75	5.5	94.5	0.0	-1.02	1.18	0.75	0.86	3.93	20055	2576	14	0	14	0	0	logfile
✔	6o77	0639	2021-09-05	2019-03-07	3.2	3.41	—	3.3	0.020	1.66	0.0	0.26	15.91	0.01	1.604	7.97	0.00	6.5	93.4	0.1	-5.77	0.63	0.79	3.12	3.3	0.003	0.73	0.0	0.04	17.10	0.00	2.187	16.22	0.10	6.7	93.2	0.1	-0.38	1.29	0.64	0.80	2.73	28884	3488	8	0	16	0	0	logfile
✔	6EF8	9046	2021-09-04	2018-08-16	3.7	3.63	—	3.6	0.007	1.38	0.0	0.06	14.34	0.01	2.023	12.83	0.00	11.4	88.1	0.5	-4.03	0.76	0.83	2.27	3.6	0.006	0.92	0.0	0.04	17.16	0.01	1.743	15.22	0.32	12.8	86.9	0.3	-2.43	0.58	0.77	0.84	1.83	22911	2849	14	0	42	0	0	logfile
✔	6o6R	0636	2021-09-05	2019-03-07	3.2	3.33	—	3.3	0.013	1.26	0.0	0.16	16.71	0.01	2.114	7.32	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.008	0.89	0.0	0.04	16.87	0.00	2.002	14.92	0.07	7.6	92.4	0.0	-1.38	0.55	0.63	0.81	2.52	27744	3332	8	0	28	0	0	logfile
✔	5YKE	6831	2021-09-05	2017-10-14	4.11	4.22	3.92	4.1	0.006	0.80	0.0	0.05	13.44	0.01	2.246	11.42	7.60	3.7	95.9	0.4	-1.76	0.66	0.76	—	4.1	0.004	0.70	0.0	0.04	12.89	0.00	2.149	11.04	0.00	3.0	97.0	0.0	1.57	1.11	0.68	0.79	—	30636	3912	12	0	4	0	0	logfile
✘	5WP9	8874	2021-09-04	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.22	0.0	0.05	9.98	0.02	1.259	2.07	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	117048	7352	24	0	16	0	59080	logfile
✔	6QZ9	4684	2021-09-04	2019-03-11	3.3	3.51	—	3.4	0.005	0.95	0.0	0.05	9.28	0.01	2.150	6.52	0.00	6.8	93.1	0.1	-4.54	0.70	0.70	0.78	3.4	0.004	0.94	0.0	0.05	17.12	0.01	1.999	24.01	0.79	6.5	93.5	0.0	-0.99	1.04	0.72	0.72	0.79	71724	8808	60	0	0	0	0	logfile
✘	6HWH	0289	2021-09-06	2018-10-12	3.3	3.56	—	3.5	0.013	2.18	1.0	0.20	12.80	0.01	0.691	7.65	0.51	9.4	90.5	0.1	-5.53	0.71	0.81	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile
✔	6o72	0638	2021-09-05	2019-03-07	3.0	3.18	—	3.2	0.012	1.45	0.0	0.16	16.40	0.01	2.062	8.42	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.80	0.0	0.04	17.85	0.01	2.190	12.67	3.16	7.0	93.0	0.0	0.20	0.79	0.64	0.81	1.95	28592	3432	8	0	28	0	0	logfile
✔	6K7M	9941	2021-09-03	2019-06-07	2.95	3.08	2.77	3.0	0.016	1.36	0.0	0.14	15.55	0.01	2.002	5.26	0.61	6.8	93.1	0.1	-3.41	0.65	0.85	3.61	3.0	0.003	0.62	0.0	0.04	16.15	0.00	2.009	9.95	2.53	4.4	95.6	0.0	-0.07	0.53	0.70	0.87	3.12	10591	1307	4	0	9	0	0	logfile
✔	6EU2	3957	2021-09-06	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.05	0.40	13.0	86.5	0.5	-5.22	0.27	0.05	0.18	3.4	0.013	1.26	4.0	0.05	15.23	0.01	1.748	19.25	0.16	12.5	87.2	0.3	-2.93	1.46	0.55	0.49	0.45	38329	4825	22	0	7	0	0	logfile
✔	5ZDH	6917	2021-09-04	2018-02-23	3.2	3.35	—	3.3	0.016	1.35	0.0	0.07	10.62	0.01	1.598	24.51	1.42	6.2	92.2	1.6	-4.98	0.75	0.75	2.34	3.3	0.009	1.01	3.0	0.05	15.24	0.01	1.903	12.00	0.30	6.6	92.7	0.8	-1.56	0.72	0.77	0.82	1.45	66045	8715	30	0	0	0	0	logfile

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