Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✔	6N1V	9319	2022-12-19	2018-11-12	4.0	4.63	—	4.2	0.008	0.96	0.0	0.06	15.13	0.01	2.226	8.06	10.74	6.7	93.1	0.2	-2.97	0.79	0.72	—	4.2	0.003	0.69	0.0	0.05	14.86	0.00	2.129	13.02	0.29	6.9	93.0	0.1	-1.16	1.70	0.86	0.86	—	36498	4470	69	0	144	0	0	logfile
✘	5YKG	6833	2022-12-22	2017-10-14	4.57	4.68	4.39	4.4	0.005	0.71	4.0	0.04	13.41	0.01	2.245	13.43	7.90	4.2	95.6	0.1	-2.42	0.73	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50868	6536	16	0	12	0	0	logfile
✘	6Jo5	9853	2022-12-22	2019-03-20	2.9	2.97	—	2.9	0.028	2.73	0.0	0.09	18.14	0.02	1.209	12.17	0.43	4.0	96.0	0.1	-2.29	0.79	0.84	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48476	4170	40	0	313	0	0	logfile
✔	6K15	9905	2022-12-14	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.003	0.68	0.0	0.04	14.97	0.00	2.132	10.19	0.21	8.1	91.9	0.0	-0.23	1.75	0.76	0.81	1.25	21486	2655	14	0	1	0	0	logfile
✔	6XYP	10651	2022-12-11	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.84	5.05	4955	725	10	0	0	0	0	logfile
✔	6XYQ	10652	2022-12-11	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.85	4.77	4955	725	10	0	0	0	0	logfile
✔	6DZL	8935	2022-12-12	2018-07-05	4.14	4.55	—	4.2	0.011	0.89	0.0	0.08	8.55	0.01	2.069	6.05	0.23	12.7	87.3	0.0	-4.57	0.78	0.84	—	4.2	0.003	0.64	0.0	0.04	10.81	0.00	2.340	11.22	0.00	8.6	91.4	0.0	-1.59	1.44	0.78	0.86	—	12693	1587	21	0	30	0	0	logfile
✔	6CUF	7622	2022-12-16	2018-03-26	4.0	4.57	—	4.2	0.007	0.94	0.0	0.09	9.96	0.01	1.984	9.24	0.81	7.3	92.6	0.1	-3.25	0.83	0.83	—	4.2	0.003	0.70	0.0	0.04	13.03	0.00	2.015	15.47	0.39	6.8	93.2	0.0	-1.29	0.77	0.83	0.84	—	32325	3843	72	0	162	0	0	logfile
✔	6EF1	9043	2022-12-15	2018-08-15	4.73	3.61	—	4.2	0.009	0.99	0.0	0.05	11.78	0.01	2.040	7.30	0.00	14.5	85.5	0.0	-5.20	0.59	0.78	—	4.2	0.005	0.81	0.0	0.05	12.77	0.00	2.102	13.62	0.00	9.4	90.6	0.0	-2.26	1.34	0.60	0.80	—	23658	3294	20	0	6	0	0	logfile
✔	6PEW	20334	2022-12-22	2019-06-21	3.2	3.44	—	3.4	0.009	1.23	12.0	0.08	15.69	0.01	1.770	12.92	3.11	5.2	94.4	0.4	-4.44	0.79	0.85	2.46	3.4	0.003	0.62	0.0	0.05	16.58	0.00	2.149	8.31	0.22	5.0	95.0	0.0	-0.79	1.28	0.79	0.87	2.66	51348	6252	12	0	0	0	0	logfile
✘	6CDi	7460	2022-12-18	2018-02-08	3.6	3.90	—	3.6	0.007	0.90	0.0	0.10	9.66	0.01	1.461	7.90	0.45	5.9	94.0	0.1	-3.25	0.84	0.84	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32763	3843	81	0	210	0	0	logfile
✔	6EF3	9045	2022-12-21	2018-08-15	4.17	3.04	—	3.8	0.016	1.11	0.0	0.07	11.79	0.01	1.340	5.82	0.07	14.7	85.2	0.0	-5.91	0.65	0.81	—	3.8	0.008	0.91	0.0	0.05	13.29	0.01	2.059	11.41	0.07	9.6	90.4	0.0	-2.73	0.74	0.67	0.84	—	44271	5824	30	0	6	0	0	logfile
✔	6i26	0328	2022-12-14	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.002	0.67	0.0	0.04	10.66	0.00	2.210	5.49	0.07	5.9	94.1	0.0	0.04	0.98	0.84	0.77	—	22765	3366	1	0	221	0	0	logfile
✔	6MHQ	9116	2022-12-16	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.72	0.86	2.42	32640	2124	12	0	0	0	15264	logfile
✔	6EF2	9044	2022-12-15	2018-08-15	4.27	3.17	—	4.0	0.011	1.02	0.0	0.06	11.43	0.01	2.139	6.21	0.00	13.4	86.5	0.0	-5.32	0.62	0.80	—	4.0	0.003	0.75	0.0	0.05	12.65	0.00	2.123	9.84	0.08	6.1	93.9	0.0	-1.83	1.63	0.63	0.82	—	24659	3290	20	0	6	0	0	logfile
✔	6NSJ	0498	2022-12-12	2019-01-24	2.7	3.69	2.67	3.6	0.007	1.12	0.0	0.06	13.78	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.004	0.63	0.0	0.04	14.27	0.00	2.223	5.32	1.74	4.1	95.9	0.0	1.71	0.52	0.59	0.75	3.08	9096	1092	12	0	18	0	0	logfile
✔	5YKF	6832	2022-12-22	2017-10-14	4.33	4.45	4.32	4.3	0.006	0.81	4.0	0.05	13.65	0.01	2.030	15.44	8.16	4.4	95.1	0.4	-2.48	0.78	0.77	—	4.3	0.003	0.69	0.0	0.04	12.72	0.00	2.183	12.44	0.00	4.5	95.5	0.1	0.66	4.57	0.79	0.79	—	50988	6536	15	0	12	0	0	logfile
✔	6MZV	9308	2022-12-18	2018-11-05	3.4	3.57	—	3.5	0.006	0.73	0.0	0.05	8.48	0.01	2.343	7.32	0.34	3.4	96.6	0.0	-4.51	0.79	0.86	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✔	6ND1	0440	2022-12-12	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.75	0.00	2.085	7.69	0.00	3.6	96.4	0.0	0.48	0.70	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile

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