Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FHL	4259	2021-06-02	2018-01-15	3.3	3.44	3.10	3.4	0.018	1.60	0.0	0.08	13.05	0.02	1.986	2.03	0.00	5.5	92.3	2.2	-1.84	0.70	0.85	3.43	3.4	0.003	0.67	0.0	0.04	16.01	0.00	2.066	10.28	0.32	2.3	97.6	0.1	0.11	2.56	0.66	0.84	2.37	14665	1855	10	0	15	0	0	logfile
✔	6BGJ	7096	2021-06-01	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.48	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.89	0.0	0.05	14.18	0.01	2.046	16.35	0.41	11.8	88.1	0.1	-0.87	1.46	0.50	0.60	1.51	7418	980	4	0	2	0	0	logfile
✔	5VN3	8713	2021-06-03	2017-04-28	3.7	3.93	3.74	3.8	0.009	1.13	0.0	0.06	9.18	0.01	2.235	6.27	0.12	10.8	88.8	0.4	-5.03	0.73	0.79	2.37	3.8	0.004	0.68	0.0	0.04	13.92	0.00	2.212	9.32	0.12	6.3	93.5	0.2	-1.49	0.76	0.74	0.82	1.67	23727	2814	21	0	129	0	0	logfile
✔	6SH3	10192	2021-06-03	2019-08-05	3.4	3.55	—	3.5	0.006	0.91	0.0	0.05	13.40	0.01	2.287	3.59	0.62	6.5	93.5	0.0	-3.29	0.70	0.80	2.63	3.5	0.004	0.67	0.0	0.04	15.66	0.01	2.225	5.71	0.53	5.6	94.4	0.0	-0.58	2.18	0.71	0.82	2.67	21021	2632	14	0	7	0	0	logfile
✔	6B7N	7063	2021-06-03	2017-10-04	3.3	4.06	—	3.6	0.008	1.11	0.0	0.07	10.65	0.01	2.171	5.41	0.78	12.1	87.5	0.4	-4.33	0.88	0.85	2.77	3.6	0.003	0.68	0.0	0.04	12.36	0.00	2.123	11.09	0.17	11.0	88.6	0.4	-1.42	0.50	0.88	0.86	2.46	22215	2898	6	0	57	0	0	logfile
✔	6NUR	0520	2021-06-01	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.56	0.0	0.09	10.59	0.01	2.270	2.22	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.002	0.60	0.0	0.04	14.73	0.00	2.178	6.36	0.31	2.0	98.0	0.0	0.64	0.78	0.59	0.82	3.03	8647	1087	5	0	2	0	0	logfile
✔	5VN8	8717	2021-06-03	2017-04-28	3.6	3.72	3.44	3.6	0.006	1.09	0.0	0.06	8.54	0.01	2.246	5.49	0.00	12.4	86.9	0.6	-4.89	0.72	0.77	1.93	3.6	0.003	0.69	0.0	0.05	14.45	0.00	2.179	10.46	0.33	9.0	90.9	0.1	-2.20	0.85	0.74	0.80	1.67	20589	2427	18	0	114	0	0	logfile
✔	6oiS	20080	2021-06-02	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.003	0.60	0.0	0.04	14.88	0.00	2.132	7.99	0.42	2.8	97.2	0.0	1.42	2.27	0.79	0.83	2.54	10732	1365	6	0	0	0	0	logfile
✔	6CMX	7526	2021-06-02	2018-03-06	3.1	3.31	—	3.3	0.008	1.00	0.0	0.14	13.02	0.01	1.638	21.12	1.51	9.6	90.2	0.2	-3.85	0.72	0.76	3.77	3.3	0.004	0.72	0.0	0.05	16.24	0.00	2.098	12.66	0.40	9.3	90.7	0.0	-2.17	0.73	0.75	0.79	3.00	10139	1300	1	0	17	0	0	logfile
✔	6oUA	20200	2021-06-01	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	4.3	0.003	0.83	0.0	0.05	14.31	0.00	2.192	11.78	0.00	11.4	88.6	0.0	-1.63	1.89	0.71	0.75	—	5208	637	3	0	0	0	0	logfile
✔	6E1K	8956	2021-06-02	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.74	1.0	0.08	13.56	0.01	2.047	10.32	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.003	0.71	0.0	0.04	14.45	0.00	2.077	11.54	0.83	5.4	94.6	0.0	-1.94	0.80	0.61	0.73	1.72	11641	1450	10	0	21	2	0	logfile
✔	6BCL	7082	2021-06-04	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	3.6	0.004	0.68	0.0	0.04	14.04	0.00	2.157	6.51	0.53	4.9	95.1	0.0	1.35	0.90	0.65	0.81	1.94	30474	3868	5	0	2	0	0	logfile
✔	6BCJ	7081	2021-06-03	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.65	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.004	0.63	0.0	0.04	14.16	0.00	2.181	6.89	0.22	5.6	94.4	0.0	1.13	0.75	0.71	0.85	1.97	29868	3744	9	0	4	8	0	logfile
✔	6BCo	7083	2021-06-04	2017-10-20	2.88	2.96	—	3.0	0.007	0.98	0.0	0.05	9.77	0.01	2.286	3.71	0.37	5.8	94.2	0.0	-4.72	0.67	0.82	3.73	2.9	0.004	0.61	0.0	0.04	15.01	0.00	2.164	6.67	1.60	4.6	95.4	0.0	1.14	1.28	0.67	0.85	2.60	30432	3808	8	0	4	0	0	logfile
✔	6E1N	8958	2021-06-02	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.53	0.0	0.07	15.15	0.01	2.054	10.50	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.004	0.78	0.0	0.04	16.59	0.01	2.062	13.54	0.47	6.4	93.6	0.0	-0.87	0.93	0.53	0.72	0.32	10682	1278	6	0	24	2	0	logfile
✔	6BCQ	7085	2021-06-04	2017-10-20	3.25	3.34	—	3.3	0.007	1.00	0.0	0.05	9.82	0.01	2.318	3.48	0.25	5.5	94.5	0.0	-4.85	0.64	0.80	3.09	3.3	0.005	0.71	0.0	0.04	14.91	0.01	2.202	8.17	0.31	4.7	95.3	0.0	1.29	0.88	0.64	0.82	1.78	31048	3932	8	0	4	0	0	logfile
✔	6CXC	7774	2021-06-02	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.84	0.0	0.05	16.73	0.00	1.943	26.10	0.57	7.4	92.6	0.0	-2.59	2.19	0.73	0.77	0.12	15196	1945	18	0	6	0	0	logfile
✔	6BX0	7301	2021-06-12	2017-12-15	3.79	4.07	—	4.0	0.010	1.28	180.0	0.08	11.39	0.01	1.342	41.95	2.59	4.5	95.3	0.2	-3.37	0.53	0.67	3.05	4.0	0.005	0.98	0.0	0.05	16.77	0.01	2.002	22.88	1.31	9.2	90.8	0.0	-2.51	4.49	0.63	0.79	2.44	259560	32100	60	0	0	0	0	logfile
✔	6oMM	20126	2021-06-01	2019-04-19	3.17	3.31	—	3.3	0.036	1.00	1.0	0.20	10.18	0.01	2.222	4.68	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	3.3	0.004	0.74	1.0	0.04	15.15	0.00	2.155	17.32	0.31	2.9	97.1	0.0	0.16	1.34	0.67	0.84	2.78	9134	1141	7	0	9	0	0	logfile
✔	3J4P	5681	2021-06-12	2013-09-10	4.8	5.14	—	5.0	0.013	1.80	0.0	0.09	16.32	0.01	1.415	77.35	8.64	11.8	83.9	4.3	-5.11	0.90	0.89	—	5.0	0.003	0.78	0.0	0.04	13.91	0.00	2.134	19.07	0.86	5.9	94.1	0.0	-2.11	0.81	0.91	0.88	—	254580	31020	60	0	180	60	0	logfile

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