Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D3W	27166	2023-04-21	2022-06-01	3.5	3.33	3.42	3.5	0.014	0.84	0.0	0.04	16.72	0.01	2.186	10.16	0.09	5.9	94.1	0.0	-0.26	0.62	0.82	1.71	3.4	0.003	0.56	0.0	0.04	17.04	0.00	2.170	8.57	0.37	4.9	95.1	0.0	0.04	0.42	0.61	0.80	1.65	10046	1280	4	0	1	0	0	logfile
✔	8EF6	28069	2023-04-22	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.003	0.58	0.0	0.04	13.52	0.00	2.120	7.98	0.08	1.4	98.6	0.0	1.89	1.30	0.60	0.82	2.94	11686	1439	9	0	12	0	0	logfile
✔	7CKX	30393	2023-04-23	2020-07-20	3.54	3.65	—	3.6	0.003	0.50	0.0	0.04	13.48	0.00	2.160	12.77	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.004	0.78	0.0	0.05	16.61	0.00	2.140	22.36	1.39	4.8	95.2	0.0	-1.32	0.76	0.61	0.76	1.72	8112	1035	5	0	2	0	0	logfile
✔	7U2K	26313	2023-04-20	2022-02-24	3.3	3.77	—	3.5	0.010	0.76	0.0	0.05	14.70	0.00	2.198	6.93	0.43	6.0	94.0	0.0	-1.90	0.83	0.89	3.29	3.6	0.003	0.59	0.0	0.04	15.58	0.00	2.189	6.17	0.14	3.8	96.2	0.0	0.52	0.48	0.78	0.85	1.59	6755	889	5	0	1	0	0	logfile
✔	7DPT	30810	2023-04-24	2020-12-21	2.48	2.64	2.47	2.7	0.009	0.84	0.0	0.05	18.06	0.00	1.445	3.04	1.23	6.0	93.9	0.2	-3.03	0.70	0.80	4.52	2.7	0.002	0.63	0.0	0.04	18.88	0.00	2.121	6.06	1.90	3.8	96.0	0.2	-0.16	0.41	0.72	0.82	3.75	18052	2228	12	0	24	96	0	logfile
✔	7WWB	32865	2023-04-20	2022-02-12	3.86	4.08	—	4.1	0.008	0.97	0.0	0.07	9.51	0.01	2.511	0.45	0.00	2.5	97.5	0.0	0.18	0.48	0.76	2.65	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.208	9.75	1.01	4.8	94.9	0.3	-0.24	1.66	0.51	0.80	2.12	5428	666	4	0	4	0	0	logfile
✔	7LJ9	23389	2023-04-23	2021-01-28	3.0	3.41	—	3.5	0.013	1.33	0.0	0.08	14.57	0.01	1.171	14.97	0.07	6.5	93.1	0.3	-3.16	0.77	0.86	2.58	3.5	0.003	0.64	0.0	0.04	16.14	0.00	2.150	9.57	1.51	5.0	95.0	0.0	-0.19	0.52	0.77	0.87	1.97	14516	1865	8	0	6	0	0	logfile
✔	7E1A	30938	2023-04-21	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✘	7VZB	32224	2023-04-21	2021-11-15	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9524	1170	4	0	4	0	0	logfile
✔	7W6M	32329	2023-04-29	2021-12-02	4.7	4.96	4.72	4.7	0.005	0.83	0.0	0.06	13.62	0.00	2.107	9.16	0.00	4.4	95.6	0.0	-0.63	0.85	0.80	—	4.7	0.004	0.74	0.0	0.05	13.62	0.00	2.036	13.13	0.00	6.2	93.8	0.0	-0.91	0.37	0.85	0.82	—	30756	3672	51	0	204	0	0	logfile
✔	6NPH	0470	2023-04-20	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	17.82	0.01	2.292	5.02	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.004	0.66	0.0	0.04	17.40	0.00	2.224	6.39	2.27	6.8	93.2	0.0	-0.33	0.92	0.59	0.84	2.98	7504	944	4	0	13	0	0	logfile
✔	7SFJ	25079	2023-04-20	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.48	0.0	0.04	17.67	0.00	2.281	5.23	1.85	3.2	96.8	0.0	2.36	0.47	0.58	0.77	2.97	7377	852	9	0	24	3	0	logfile
✔	7CKW	30392	2023-04-23	2020-07-20	3.22	3.34	—	3.3	0.002	0.48	0.0	0.04	13.74	0.00	2.178	15.84	1.74	3.0	97.0	0.0	-3.30	0.58	0.71	1.74	3.3	0.003	0.67	0.0	0.04	16.11	0.00	2.036	20.45	0.70	4.6	95.4	0.0	-0.85	0.67	0.62	0.78	1.82	8103	1035	5	0	2	0	0	logfile
✔	8F7Q	28907	2023-04-22	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.66	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✔	7AZP	11950	2023-04-28	2020-11-17	3.5	3.84	3.46	3.6	0.004	0.62	0.0	0.04	13.41	0.00	2.210	10.65	0.71	3.3	96.7	0.0	-2.29	0.89	0.86	0.66	3.6	0.007	0.75	0.0	0.05	14.85	0.00	2.172	14.54	0.54	4.3	95.7	0.0	0.48	1.22	0.89	0.86	1.01	27391	3675	7	0	0	0	0	logfile
✔	8EF5	28066	2023-04-22	2022-09-08	3.3	2.72	3.17	3.3	0.004	0.88	0.0	0.07	7.98	0.01	2.284	4.02	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.3	0.004	0.69	0.0	0.04	15.35	0.00	2.118	11.90	0.56	1.9	98.1	0.0	1.03	0.84	0.76	0.81	1.87	11705	1441	9	0	12	0	0	logfile
✘	7KUE	23036	2023-04-20	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.46	0.01	2.205	5.73	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4726	577	4	0	2	0	0	logfile
✔	6PVM	20493	2023-04-25	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.003	0.88	0.0	0.04	13.70	0.00	2.121	13.51	0.00	13.6	86.1	0.3	-2.67	1.03	0.49	0.74	—	21006	2576	6	0	2	0	0	logfile
✔	6V4J	21041	2023-04-28	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.47	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.003	0.81	0.0	0.04	16.33	0.00	2.100	13.99	3.48	4.6	95.4	0.0	-1.07	1.53	0.48	0.50	1.34	20637	2697	8	0	0	0	0	logfile
✔	6GYN	0093	2023-04-24	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.52	0.0	0.04	13.28	0.00	2.227	6.55	0.23	2.7	97.3	0.0	2.35	0.50	0.64	0.83	2.23	16932	1980	8	0	36	0	0	logfile

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