Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VAL	21142	2023-08-16	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.70	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.69	0.0	0.04	16.72	0.00	2.162	6.98	0.79	2.6	97.4	0.0	1.34	2.45	0.68	0.79	1.56	21615	2827	11	0	0	0	0	logfile
✔	7DSL	30837	2023-08-10	2020-12-31	2.9	3.28	—	3.2	0.013	1.26	0.0	0.49	15.59	0.01	2.055	6.20	1.14	9.1	90.0	0.9	-3.74	0.70	0.86	2.36	3.3	0.003	1.21	0.0	0.11	15.90	0.00	2.107	7.78	2.03	7.2	92.8	0.0	0.69	0.57	0.68	0.86	2.06	7522	935	8	0	12	8	0	logfile
✔	6oZC	20224	2023-08-18	2019-05-15	3.79	4.35	—	4.2	0.023	1.84	0.0	0.11	10.40	0.01	2.303	1.05	0.00	3.1	96.2	0.7	0.38	0.79	0.82	2.11	4.2	0.003	0.76	0.0	0.04	14.82	0.00	2.060	12.96	0.42	5.4	94.5	0.1	-0.37	1.62	0.78	0.81	1.50	25821	3027	54	0	186	0	0	logfile
✔	7TJV	25933	2023-08-17	2022-01-17	3.6	3.57	3.65	3.6	0.003	0.66	0.0	0.05	12.37	0.01	1.836	2.06	0.00	1.9	98.1	0.0	0.21	0.62	0.81	2.69	3.6	0.004	0.67	0.0	0.05	16.17	0.00	1.795	9.35	0.42	2.9	97.1	0.0	0.43	0.58	0.63	0.83	1.83	23170	3110	12	0	10	0	0	logfile
✔	6A70	6991	2023-08-13	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.8	0.005	0.86	0.0	0.05	14.75	0.00	2.095	13.74	0.53	8.3	91.7	0.0	-1.40	1.21	0.58	0.73	0.81	15142	2086	4	0	0	0	0	logfile
✔	7WGY	32492	2023-08-17	2021-12-29	4.0	4.56	—	4.2	0.008	0.77	0.0	0.05	13.60	0.01	2.104	7.65	0.00	5.5	94.2	0.3	-0.80	0.80	0.77	—	4.2	0.004	0.60	0.0	0.04	14.77	0.00	2.028	10.91	0.20	5.3	94.4	0.3	0.00	0.44	0.84	0.84	—	22914	2879	14	0	31	0	0	logfile
✔	7L0R	23101	2023-08-10	2020-12-12	4.2	4.12	4.05	4.0	0.007	1.37	2.0	0.08	13.58	0.01	2.106	10.15	1.05	6.6	93.4	0.0	-3.44	0.61	0.66	—	4.0	0.004	0.82	0.0	0.05	13.15	0.00	2.102	21.16	0.13	4.7	95.3	0.0	-0.35	3.45	0.62	0.74	—	6968	887	5	0	0	0	0	logfile
✔	7T38	25651	2023-08-15	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.55	0.0	0.04	15.45	0.00	2.262	6.56	0.44	4.0	96.0	0.0	1.62	1.56	0.70	0.83	1.38	19404	2432	4	0	0	0	0	logfile
✔	7LGU	23329	2023-08-12	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.08	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.003	0.49	0.0	0.04	14.68	0.00	2.175	5.63	0.88	1.6	98.4	0.0	1.33	0.69	0.64	0.85	5.75	11597	1360	6	0	110	111	0	logfile
✔	7TKT	25981	2023-08-13	2022-01-17	3.6	3.75	3.75	3.7	0.007	1.26	0.0	0.04	18.72	0.01	2.224	6.30	0.00	4.7	95.3	0.0	0.63	0.72	0.81	2.05	3.8	0.003	0.70	0.0	0.04	17.80	0.00	2.189	7.87	0.00	4.7	95.3	0.0	1.10	1.94	0.71	0.81	2.16	13252	1560	8	0	56	0	0	logfile
✔	7FB4	31514	2023-08-16	2021-07-08	3.4	4.08	—	3.9	0.005	0.71	0.0	0.05	14.05	0.00	2.164	12.36	0.08	9.3	90.7	0.0	-4.07	0.79	0.82	2.10	3.9	0.004	0.63	0.0	0.04	15.51	0.00	2.145	10.50	0.21	7.8	92.2	0.0	-1.53	0.50	0.77	0.81	1.71	21411	2746	3	0	0	0	0	logfile
✔	6XE6	22144	2023-08-10	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.93	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.78	0.0	0.04	13.64	0.00	2.148	13.39	0.15	9.2	90.3	0.5	-1.67	1.21	0.53	0.75	—	6530	826	1	0	6	0	0	logfile
✔	7TPG	26054	2023-08-09	2022-01-25	3.23	3.54	—	3.5	0.003	1.06	0.0	0.04	13.80	0.00	2.078	7.39	0.20	3.5	96.5	0.0	0.79	0.63	0.78	2.30	3.5	0.003	0.57	0.0	0.04	16.06	0.00	2.224	7.39	0.80	3.9	96.1	0.0	0.40	2.28	0.63	0.81	2.07	4777	626	4	0	1	0	0	logfile
✔	7VSR	32114	2023-08-13	2021-10-27	4.5	4.64	4.47	3.4	0.005	0.72	0.0	0.04	13.45	0.01	1.817	11.43	1.90	3.0	97.0	0.0	-0.26	0.77	0.55	—	3.4	0.004	0.61	0.0	0.04	12.83	0.00	1.740	17.65	0.00	5.5	94.5	0.0	-0.36	2.68	0.88	0.77	—	66142	4040	20	0	12	0	32736	logfile
✔	6MLU	9146	2023-08-09	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile
✔	7P4i	13193	2023-08-11	2021-07-11	4.2	5.62	—	4.1	0.003	0.76	0.0	0.04	13.10	0.00	2.168	11.83	0.00	5.7	94.3	0.0	-0.54	0.61	0.84	—	4.2	0.003	0.71	0.0	0.04	13.52	0.00	2.245	11.01	0.00	5.6	94.4	0.0	0.61	0.91	0.61	0.86	—	9510	1284	3	0	0	0	0	logfile
✔	7YG0	33803	2023-08-13	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	15.92	0.00	2.114	27.70	0.49	5.4	94.5	0.1	-0.73	2.16	0.67	0.73	0.24	13336	1708	2	0	0	0	0	logfile
✔	7TE9	25843	2023-08-19	2022-01-04	3.92	4.91	3.93	3.8	0.006	1.06	0.0	0.06	15.48	0.01	0.928	8.68	1.21	9.8	89.6	0.6	-4.42	0.81	0.75	0.65	3.8	0.003	0.81	0.0	0.04	15.72	0.00	2.083	16.26	0.10	10.0	89.6	0.3	-1.72	0.66	0.84	0.83	0.67	28142	3601	8	0	0	0	0	logfile
✔	6M66	30114	2023-08-13	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.231	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	4.2	0.003	0.80	0.0	0.05	14.77	0.01	2.116	13.45	0.00	7.3	92.7	0.0	-0.88	1.68	0.64	0.74	—	14938	1855	7	0	0	0	0	logfile
✔	3JCZ	6630	2023-08-17	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile

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