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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SKY | 10231 | 2022-12-14 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 16.48 | 0.00 | 2.102 | 5.19 | 2.81 | 2.1 | 97.9 | 0.0 | 1.58 | 2.20 | 0.73 | 0.85 | 2.38 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6N1V | 9319 | 2022-12-19 | 2018-11-12 | 4.0 | 4.63 | — | 4.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.13 | 0.01 | 2.226 | 8.06 | 10.74 | 6.7 | 93.1 | 0.2 | -2.97 | 0.79 | 0.72 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.05 | 14.86 | 0.00 | 2.129 | 13.02 | 0.29 | 6.9 | 93.0 | 0.1 | -1.16 | 1.70 | 0.86 | 0.86 | — | 36498 | 4470 | 69 | 0 | 144 | 0 | 0 | logfile |
✘ | 5YKG | 6833 | 2022-12-22 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.41 | 0.01 | 2.245 | 13.43 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Jo5 | 9853 | 2022-12-22 | 2019-03-20 | 2.9 | 2.97 | — | 2.9 | 0.028 | 2.73 | 0.0 | 0.09 | 18.14 | 0.02 | 1.209 | 12.17 | 0.43 | 4.0 | 96.0 | 0.1 | -2.29 | 0.79 | 0.84 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48476 | 4170 | 40 | 0 | 313 | 0 | 0 | logfile |
✔ | 6K15 | 9905 | 2022-12-14 | 2019-05-09 | 3.4 | 3.68 | — | 3.6 | 0.005 | 0.96 | 0.0 | 0.05 | 10.23 | 0.01 | 1.639 | 5.00 | 0.33 | 8.6 | 91.3 | 0.1 | -4.21 | 0.74 | 0.78 | 2.17 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 14.97 | 0.00 | 2.132 | 10.19 | 0.21 | 8.1 | 91.9 | 0.0 | -0.23 | 1.75 | 0.76 | 0.81 | 1.25 | 21486 | 2655 | 14 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2022-12-11 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.84 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYQ | 10652 | 2022-12-11 | 2020-01-30 | 3.09 | 3.30 | 2.79 | 3.3 | 0.007 | 0.71 | 0.0 | 0.05 | 12.97 | 0.00 | 2.130 | 9.08 | 0.00 | 3.5 | 96.5 | 0.0 | -4.52 | 0.46 | 0.84 | 3.97 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 15.09 | 0.00 | 2.232 | 8.09 | 0.82 | 2.3 | 97.7 | 0.0 | -3.28 | 0.44 | 0.47 | 0.85 | 4.77 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DZL | 8935 | 2022-12-12 | 2018-07-05 | 4.14 | 4.55 | — | 4.2 | 0.011 | 0.89 | 0.0 | 0.08 | 8.55 | 0.01 | 2.069 | 6.05 | 0.23 | 12.7 | 87.3 | 0.0 | -4.57 | 0.78 | 0.84 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 10.81 | 0.00 | 2.340 | 11.22 | 0.00 | 8.6 | 91.4 | 0.0 | -1.59 | 1.44 | 0.78 | 0.86 | — | 12693 | 1587 | 21 | 0 | 30 | 0 | 0 | logfile |
✔ | 6CUF | 7622 | 2022-12-16 | 2018-03-26 | 4.0 | 4.57 | — | 4.2 | 0.007 | 0.94 | 0.0 | 0.09 | 9.96 | 0.01 | 1.984 | 9.24 | 0.81 | 7.3 | 92.6 | 0.1 | -3.25 | 0.83 | 0.83 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 13.03 | 0.00 | 2.015 | 15.47 | 0.39 | 6.8 | 93.2 | 0.0 | -1.29 | 0.77 | 0.83 | 0.84 | — | 32325 | 3843 | 72 | 0 | 162 | 0 | 0 | logfile |
✔ | 6EF1 | 9043 | 2022-12-15 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 11.78 | 0.01 | 2.040 | 7.30 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.005 | 0.81 | 0.0 | 0.05 | 12.77 | 0.00 | 2.102 | 13.62 | 0.00 | 9.4 | 90.6 | 0.0 | -2.26 | 1.34 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PEW | 20334 | 2022-12-22 | 2019-06-21 | 3.2 | 3.44 | — | 3.4 | 0.009 | 1.23 | 12.0 | 0.08 | 15.69 | 0.01 | 1.770 | 12.92 | 3.11 | 5.2 | 94.4 | 0.4 | -4.44 | 0.79 | 0.85 | 2.46 | 3.4 | 0.003 | 0.62 | 0.0 | 0.05 | 16.58 | 0.00 | 2.149 | 8.31 | 0.22 | 5.0 | 95.0 | 0.0 | -0.79 | 1.28 | 0.79 | 0.87 | 2.66 | 51348 | 6252 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CDi | 7460 | 2022-12-18 | 2018-02-08 | 3.6 | 3.90 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.10 | 9.66 | 0.01 | 1.461 | 7.90 | 0.45 | 5.9 | 94.0 | 0.1 | -3.25 | 0.84 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32763 | 3843 | 81 | 0 | 210 | 0 | 0 | logfile |
✔ | 6EF3 | 9045 | 2022-12-21 | 2018-08-15 | 4.17 | 3.04 | — | 3.8 | 0.016 | 1.11 | 0.0 | 0.07 | 11.79 | 0.01 | 1.340 | 5.82 | 0.07 | 14.7 | 85.2 | 0.0 | -5.91 | 0.65 | 0.81 | — | 3.8 | 0.008 | 0.91 | 0.0 | 0.05 | 13.29 | 0.01 | 2.059 | 11.41 | 0.07 | 9.6 | 90.4 | 0.0 | -2.73 | 0.74 | 0.67 | 0.84 | — | 44271 | 5824 | 30 | 0 | 6 | 0 | 0 | logfile |
✔ | 6i26 | 0328 | 2022-12-14 | 2018-10-31 | 4.3 | 4.37 | — | 4.2 | 0.005 | 0.89 | 0.0 | 0.05 | 8.22 | 0.01 | 0.411 | 6.12 | 0.50 | 6.4 | 93.3 | 0.3 | -6.25 | 0.75 | 0.60 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 10.66 | 0.00 | 2.210 | 5.49 | 0.07 | 5.9 | 94.1 | 0.0 | 0.04 | 0.98 | 0.84 | 0.77 | — | 22765 | 3366 | 1 | 0 | 221 | 0 | 0 | logfile |
✔ | 6MHQ | 9116 | 2022-12-16 | 2018-09-18 | 3.4 | 3.50 | — | 3.5 | 0.018 | 0.80 | 0.0 | 0.08 | 12.18 | 0.00 | 2.210 | 6.75 | 3.14 | 5.8 | 94.2 | 0.0 | -1.67 | 0.73 | 0.83 | 2.60 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 15.39 | 0.00 | 2.088 | 11.34 | 0.84 | 5.0 | 95.0 | 0.0 | 2.21 | 1.06 | 0.72 | 0.86 | 2.42 | 32640 | 2124 | 12 | 0 | 0 | 0 | 15264 | logfile |
✔ | 6EF2 | 9044 | 2022-12-15 | 2018-08-15 | 4.27 | 3.17 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.06 | 11.43 | 0.01 | 2.139 | 6.21 | 0.00 | 13.4 | 86.5 | 0.0 | -5.32 | 0.62 | 0.80 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 12.65 | 0.00 | 2.123 | 9.84 | 0.08 | 6.1 | 93.9 | 0.0 | -1.83 | 1.63 | 0.63 | 0.82 | — | 24659 | 3290 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NSJ | 0498 | 2022-12-12 | 2019-01-24 | 2.7 | 3.69 | 2.67 | 3.6 | 0.007 | 1.12 | 0.0 | 0.06 | 13.78 | 0.01 | 2.340 | 8.25 | 2.18 | 6.0 | 94.0 | 0.0 | -4.40 | 0.61 | 0.75 | 5.00 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 14.27 | 0.00 | 2.223 | 5.32 | 1.74 | 4.1 | 95.9 | 0.0 | 1.71 | 0.52 | 0.59 | 0.75 | 3.08 | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 5YKF | 6832 | 2022-12-22 | 2017-10-14 | 4.33 | 4.45 | 4.32 | 4.3 | 0.006 | 0.81 | 4.0 | 0.05 | 13.65 | 0.01 | 2.030 | 15.44 | 8.16 | 4.4 | 95.1 | 0.4 | -2.48 | 0.78 | 0.77 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.72 | 0.00 | 2.183 | 12.44 | 0.00 | 4.5 | 95.5 | 0.1 | 0.66 | 4.57 | 0.79 | 0.79 | — | 50988 | 6536 | 15 | 0 | 12 | 0 | 0 | logfile |
✔ | 6MZV | 9308 | 2022-12-18 | 2018-11-05 | 3.4 | 3.57 | — | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 8.48 | 0.01 | 2.343 | 7.32 | 0.34 | 3.4 | 96.6 | 0.0 | -4.51 | 0.79 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND1 | 0440 | 2022-12-12 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.75 | 0.00 | 2.085 | 7.69 | 0.00 | 3.6 | 96.4 | 0.0 | 0.48 | 0.70 | 0.59 | 0.81 | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |