Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J5P	5778	2022-05-14	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.28	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.12	0.00	2.147	17.88	0.35	5.2	94.8	0.0	0.56	2.07	0.73	0.79	0.76	18636	2324	4	0	44	0	0	logfile
✔	3JAC	6343	2022-05-14	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.52	0.01	1.934	77.83	0.00	26.2	72.4	1.4	-5.34	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3J9J	5778	2022-05-14	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	6V3G	21036	2022-05-15	2019-11-25	4.0	4.39	—	4.1	0.008	1.05	0.0	0.07	10.57	0.01	2.211	13.54	2.66	5.6	94.4	0.0	-2.76	0.72	0.77	—	4.1	0.003	0.74	0.0	0.04	12.79	0.00	2.151	15.13	0.38	3.7	96.3	0.0	-0.51	0.89	0.73	0.83	—	28520	3580	4	0	0	0	0	logfile
✔	6Y1Z	10673	2022-05-14	2020-02-14	2.82	3.48	—	3.3	0.006	0.62	0.0	0.24	14.03	0.00	2.325	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.87	0.0	0.12	16.05	0.00	2.093	4.80	2.82	2.2	97.8	0.0	1.11	0.56	0.58	0.72	2.46	16610	1930	10	0	35	0	0	logfile
✔	6RWB	10037	2022-05-15	2019-06-04	3.25	3.23	—	3.2	0.006	0.99	0.0	0.05	10.24	0.01	2.253	4.69	0.36	9.9	90.1	0.0	-4.08	0.81	0.80	2.59	3.1	0.004	0.67	0.0	0.04	15.37	0.00	2.137	9.82	0.36	9.1	90.9	0.0	-0.13	1.29	0.83	0.85	2.08	75405	9365	5	0	0	0	0	logfile
✔	6T63	10383	2022-05-16	2019-10-17	3.8	3.80	—	3.8	0.005	0.85	0.0	0.05	15.28	0.01	0.439	4.46	0.00	7.1	92.6	0.3	-3.77	0.52	0.79	2.11	3.7	0.005	0.82	0.0	0.04	18.21	0.01	2.085	12.05	0.62	6.8	93.1	0.2	1.22	1.70	0.53	0.81	1.62	30978	3906	18	0	0	0	0	logfile
✔	5KYH	8298	2022-05-17	2016-07-21	4.0	3.99	—	4.2	0.014	1.82	0.0	0.11	11.44	0.01	1.692	34.34	3.90	2.5	96.2	1.3	-0.68	0.47	0.78	—	4.1	0.003	0.75	0.0	0.05	15.12	0.00	2.070	10.40	0.35	5.4	94.6	0.0	0.13	1.73	0.47	0.79	—	38892	5082	21	0	0	0	0	logfile
✔	5G5L	3439	2022-05-17	2016-05-26	4.8	5.08	—	4.8	0.010	1.38	14.0	0.09	16.60	0.01	0.675	31.29	7.76	6.0	92.2	1.8	-2.38	0.81	0.71	—	4.8	0.003	0.73	0.0	0.04	13.45	0.00	2.016	17.49	0.00	4.2	95.8	0.1	0.33	3.24	0.85	0.83	—	37349	4686	20	0	7	0	0	logfile
✔	6QM4	4587	2022-05-13	2019-02-01	3.8	3.88	3.83	3.8	0.007	0.99	0.0	0.05	15.63	0.01	2.242	3.99	0.00	4.8	95.2	0.0	-5.94	0.61	0.79	1.31	3.9	0.007	0.80	0.0	0.04	17.33	0.01	2.122	9.70	0.44	4.0	96.0	0.0	0.63	0.71	0.63	0.79	1.37	10580	1308	2	0	0	0	0	logfile
✔	6NQ1	0478	2022-05-13	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.004	0.71	0.0	0.04	16.06	0.01	2.054	10.17	0.36	5.3	94.7	0.0	0.88	1.29	0.58	0.83	1.98	10046	1242	2	0	0	0	0	logfile
✔	6V38	21029	2022-05-16	2019-11-25	3.8	3.97	—	3.8	0.014	1.47	0.0	0.07	18.17	0.02	2.255	15.24	4.55	5.3	94.7	0.0	-2.89	0.66	0.79	1.16	3.8	0.003	0.60	0.0	0.04	16.13	0.00	2.222	12.41	0.13	4.4	95.6	0.0	-0.39	0.65	0.66	0.80	0.93	29152	3496	8	0	56	0	0	logfile
✔	6NPY	0476	2022-05-12	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.65	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.005	0.96	0.0	0.05	17.26	0.01	2.126	25.21	0.72	13.5	86.5	0.0	-2.55	1.81	0.79	0.72	0.29	7586	965	3	0	1	0	0	logfile
✔	5X6o	6708	2022-05-14	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.14	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.009	1.01	1.0	0.04	14.78	0.00	2.185	10.83	0.29	8.2	90.4	1.3	-0.84	0.80	0.61	0.76	0.82	19309	2701	2	0	0	0	0	logfile
✔	5Y5Y	6811	2022-05-16	2017-08-10	4.7	4.66	—	4.6	0.027	2.87	128.0	0.17	18.51	0.03	2.246	4.76	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.007	1.01	0.0	0.05	15.19	0.01	2.040	19.31	0.00	10.8	88.8	0.5	-1.68	1.75	0.70	0.82	—	32159	4164	15	0	2	0	0	logfile
✔	6o1U	0605	2022-05-14	2019-02-21	2.8	3.27	—	3.2	0.010	1.08	4.0	0.06	14.75	0.01	2.180	5.37	2.65	4.6	95.4	0.0	-5.22	0.69	0.83	2.95	3.3	0.003	0.71	0.0	0.04	16.08	0.01	2.211	10.25	1.37	4.2	95.8	0.0	0.79	1.22	0.67	0.81	2.56	19612	2456	4	0	0	0	0	logfile
✔	5JLF	8163	2022-05-14	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.21	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.74	0.0	0.04	15.30	0.00	1.990	11.16	0.71	3.8	96.0	0.3	0.19	1.43	0.68	0.83	1.61	15800	1835	12	0	280	0	0	logfile
✔	3J94	6204	2022-05-14	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.004	0.82	0.0	0.04	13.92	0.01	1.560	18.95	0.00	5.5	94.0	0.5	0.45	2.62	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	6HRB	0258	2022-05-13	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.76	0.0	0.04	13.56	0.00	2.132	15.05	0.18	4.3	95.7	0.0	-0.40	1.27	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6PPE	20434	2022-05-17	2019-07-06	3.19	3.60	—	3.5	0.006	0.67	0.0	0.04	9.86	0.00	2.365	0.73	0.00	1.5	98.5	0.0	-2.78	0.84	0.90	4.24	3.5	0.004	0.56	0.0	0.04	14.62	0.00	1.907	5.60	0.04	2.6	97.4	0.0	1.74	1.26	0.77	0.85	3.65	43736	2814	42	0	0	14	21896	logfile

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