Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✘	6VFi	21173	2022-07-03	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	6So5	10266	2022-07-03	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.72	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.83	0.0	0.05	14.25	0.01	2.180	16.81	0.00	5.8	94.2	0.0	-0.33	1.26	0.66	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	6WSL	21893	2022-07-05	2020-05-01	3.1	3.39	—	3.9	0.007	0.82	0.0	0.05	15.24	0.01	2.264	6.78	8.98	6.8	93.2	0.0	-5.33	0.54	0.84	2.29	3.9	0.003	0.68	0.0	0.04	16.48	0.00	2.196	12.57	0.36	4.7	95.3	0.0	-1.81	0.81	0.54	0.85	2.15	18204	2278	12	0	4	0	0	logfile
✘	6W98	21580	2022-07-03	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.82	0.01	1.174	2.62	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10317	1389	3	0	4	1	0	logfile
✔	6Vo1	21257	2022-07-04	2020-01-29	3.88	4.48	3.94	4.2	0.020	1.78	0.0	0.10	10.90	0.01	2.033	2.56	0.72	4.5	94.2	1.3	0.04	0.81	0.83	2.71	4.2	0.003	0.77	0.0	0.04	13.74	0.00	2.172	13.41	0.24	5.8	93.4	0.8	-0.55	1.45	0.81	0.84	2.26	19806	2382	42	0	87	0	0	logfile
✘	6X19	21993	2022-07-03	2020-05-18	2.1	2.20	2.11	2.1	0.007	1.03	6.0	0.08	14.03	0.01	1.224	13.22	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10277	1258	9	0	1	136	0	logfile
✔	6W4S	21539	2022-07-03	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.30	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.004	0.68	0.0	0.04	15.50	0.01	2.156	9.00	0.56	3.8	96.2	0.0	1.78	0.45	0.58	0.84	2.13	4986	650	3	0	0	0	0	logfile
✔	6S3L	10093	2022-07-04	2019-06-25	3.2	3.35	3.21	3.3	0.010	0.93	0.0	0.05	15.45	0.01	2.050	15.63	2.72	5.8	93.6	0.5	-3.51	0.68	0.84	1.81	3.3	0.006	0.87	0.0	0.04	17.46	0.01	2.108	11.56	0.39	5.7	94.1	0.2	1.43	0.59	0.67	0.86	1.34	13849	1768	11	0	0	0	0	logfile
✔	6XBD	22116	2022-07-04	2020-06-05	3.05	3.71	—	3.6	0.004	0.66	0.0	0.04	11.69	0.00	2.104	8.98	0.06	3.5	96.5	0.0	-2.47	0.78	0.85	2.38	3.6	0.003	0.62	0.0	0.04	14.64	0.00	2.148	7.63	0.36	3.2	96.8	0.0	0.61	0.55	0.76	0.84	1.88	17433	2084	15	0	322	0	0	logfile
✔	6X1A	21994	2022-07-03	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.66	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.6	0.008	0.99	0.0	0.04	16.94	0.01	1.528	10.61	3.60	3.2	96.8	0.0	-0.54	0.99	0.53	0.73	2.65	10140	1262	5	0	1	23	0	logfile
✔	6WX6	21951	2022-07-04	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.78	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	6S3R	10095	2022-07-03	2019-06-25	3.5	3.63	3.52	3.6	0.006	0.89	0.0	0.05	15.34	0.01	2.035	18.37	2.22	8.4	90.8	0.8	-3.03	0.65	0.79	1.05	3.6	0.009	1.11	0.0	0.04	17.29	0.01	2.021	17.55	0.14	7.5	92.3	0.2	0.52	1.77	0.65	0.79	0.65	12855	1669	11	0	0	0	0	logfile
✔	6UBT	20715	2022-07-04	2019-09-12	3.55	4.09	3.43	3.8	0.007	1.51	0.0	0.08	12.82	0.01	2.274	5.92	0.31	7.1	92.9	0.0	-1.97	0.77	0.81	1.98	3.8	0.003	0.71	0.0	0.04	15.33	0.00	2.224	10.71	0.44	4.7	95.3	0.0	-0.07	1.27	0.77	0.84	1.83	14505	1770	15	0	10	0	0	logfile
✔	6UUN	20883	2022-07-03	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	9.16	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.1	0.003	0.57	0.0	0.04	15.94	0.00	2.165	8.76	2.95	2.7	97.3	0.0	0.26	1.01	0.69	0.86	3.03	8980	1202	7	0	0	0	0	logfile
✘	6VM2	21236	2022-07-04	2020-01-27	3.34	4.05	3.31	3.8	0.011	1.21	0.0	0.07	16.70	0.01	1.177	5.64	0.00	4.2	95.8	0.0	-2.33	0.77	0.85	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15355	1815	15	0	20	0	0	logfile
✔	6VKN	21227	2022-07-04	2020-01-21	3.7	3.81	3.60	3.8	0.018	1.74	3.0	0.09	10.81	0.01	2.274	1.61	0.85	3.6	95.7	0.8	0.87	0.76	0.83	3.33	3.8	0.004	0.70	0.0	0.04	14.82	0.00	2.158	6.57	0.62	4.3	95.3	0.4	-0.10	1.31	0.76	0.84	2.38	20220	2394	42	0	102	0	0	logfile
✘	6WEJ	21649	2022-07-04	2020-04-02	2.6	3.13	—	3.1	0.015	1.44	16.0	0.06	15.48	0.01	1.126	8.88	2.80	4.3	95.7	0.0	-2.04	0.62	0.80	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17665	2052	8	0	33	0	0	logfile
✔	7C2L	30276	2022-07-07	2020-05-08	3.1	3.25	—	3.1	0.011	1.21	0.0	0.08	16.45	0.01	1.905	38.70	6.37	13.2	82.4	4.4	-4.85	0.67	0.78	2.05	3.1	0.009	0.95	3.0	0.05	16.53	0.01	1.853	12.56	0.20	9.8	89.7	0.5	-2.59	1.28	0.67	0.76	1.73	35988	4479	41	0	89	0	0	logfile
✔	6U7M	20673	2022-07-06	2019-09-03	3.8	4.00	—	4.0	0.004	0.78	0.0	0.05	9.33	0.01	2.321	2.88	0.27	8.3	91.7	0.0	-4.11	0.57	0.81	2.42	4.0	0.003	0.67	0.0	0.04	13.72	0.00	2.092	8.22	0.16	6.5	93.5	0.0	-1.98	2.05	0.58	0.82	2.32	99420	12510	30	0	0	0	0	logfile

• ← previous
• Page 2 of 392
• next →