Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5W9K	8786	2021-09-05	2017-06-23	4.6	4.70	4.66	4.6	0.013	1.75	2.0	0.08	10.40	0.01	1.342	4.22	0.14	3.7	95.7	0.6	1.72	0.72	0.74	—	4.6	0.003	0.69	0.0	0.04	12.50	0.00	2.123	12.42	0.00	5.6	94.3	0.2	0.22	1.46	0.73	0.77	—	32873	4244	12	0	0	0	0	logfile
✔	6HTQ	0270	2021-09-08	2018-10-04	4.5	4.18	—	4.1	0.008	0.89	0.0	0.04	17.41	0.01	2.213	8.09	0.32	10.3	89.4	0.3	-4.50	0.83	0.79	—	4.1	0.004	0.69	0.0	0.04	17.70	0.01	2.012	21.57	0.04	10.9	89.0	0.1	-2.53	2.31	0.83	0.79	—	146680	5640	53	4770	0	0	0	logfile
✔	6AHC	9623	2021-09-06	2018-08-17	3.45	3.82	—	3.8	0.008	1.06	0.0	0.06	10.67	0.01	2.268	3.08	0.66	7.9	92.0	0.1	-4.33	0.58	0.77	2.27	3.8	0.005	0.86	0.0	0.05	15.15	0.01	2.069	9.33	0.54	7.7	92.3	0.0	-1.12	3.63	0.67	0.85	1.86	46106	6052	8	0	0	0	0	logfile
✘	3JB8	6382	2021-09-18	2015-08-04	3.6	3.59	—	96.0	0.011	1.54	0.0	0.07	11.99	0.01	0.235	173.86	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245880	33000	180	0	0	0	0	logfile
✔	6E2R	8969	2021-09-05	2018-07-12	2.8	2.92	—	2.9	0.016	0.92	0.0	0.06	14.23	0.01	2.216	2.61	4.65	3.3	96.7	0.0	-3.68	0.72	0.85	5.02	2.9	0.003	0.62	0.0	0.04	14.99	0.00	2.115	3.40	1.09	2.5	97.5	0.0	-1.33	1.30	0.74	0.87	5.04	183180	11340	60	0	0	0	90180	logfile
✔	6RiB	4887	2021-09-03	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.011	1.29	0.0	0.06	14.63	0.01	2.071	31.15	0.00	23.5	76.5	0.0	-5.95	1.65	0.78	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	5W9o	8790	2021-09-05	2017-06-23	4.5	4.59	4.45	4.5	0.013	1.67	0.0	0.08	10.49	0.01	1.325	7.67	0.08	3.9	95.4	0.7	1.29	0.73	0.77	—	4.4	0.006	1.18	12.0	0.07	13.21	0.01	1.809	28.27	0.11	7.4	91.9	0.7	-0.37	8.39	0.60	0.53	—	32958	4257	12	0	0	0	0	logfile
✔	5W9P	8791	2021-09-05	2017-06-23	4.0	4.15	3.97	4.0	0.013	1.59	0.0	0.08	12.11	0.02	1.350	3.05	0.68	4.4	94.5	1.2	1.11	0.75	0.83	—	4.0	0.006	0.80	0.0	0.04	15.24	0.01	2.051	13.75	0.23	7.8	91.8	0.3	-0.22	1.42	0.76	0.84	—	28014	3618	12	0	0	0	0	logfile
✔	6C14	7328	2021-09-03	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.005	0.82	0.0	0.05	12.11	0.01	2.092	22.47	0.27	5.2	94.8	0.0	-1.88	2.66	0.57	0.72	—	6746	860	4	0	0	0	0	logfile
✔	6JPU	9871	2021-09-05	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	69.43	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.005	0.89	0.0	0.05	13.59	0.01	1.796	135.54	0.00	11.9	88.0	0.1	-2.09	1.27	0.81	0.80	—	30378	3462	6	0	0	0	2610	logfile
✔	6RJ9	4900	2021-09-03	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.003	0.57	0.0	0.04	16.27	0.00	2.220	5.27	0.09	3.8	96.2	0.0	-0.23	0.40	0.68	0.87	1.87	11874	1202	5	97	0	0	0	logfile
✔	6DRK	8901	2021-09-05	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.77	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	4.2	0.004	0.69	0.0	0.04	13.46	0.00	2.233	5.41	1.02	6.7	93.3	0.0	0.56	1.47	0.66	0.78	0.93	33120	5060	4	0	0	0	0	logfile
✔	5W9J	8785	2021-09-05	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.58	0.0	0.07	11.98	0.02	1.881	5.22	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	4.7	0.003	0.67	0.0	0.04	12.52	0.00	2.158	12.22	0.00	5.1	94.7	0.1	0.33	1.35	0.74	0.68	—	32958	4257	12	0	0	0	0	logfile
✔	6PiF	20349	2021-09-05	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.91	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.004	0.85	1.0	0.04	17.09	0.01	2.048	11.66	0.56	16.2	83.3	0.5	-2.91	1.60	0.73	0.85	2.45	28954	3448	11	60	0	0	0	logfile
✔	6oGi	20058	2021-09-08	2019-04-02	3.4	4.58	—	2.9	0.009	1.11	0.0	0.09	14.54	0.01	2.042	15.55	0.49	10.3	89.0	0.7	-4.74	0.90	0.82	1.06	3.0	0.006	0.76	0.0	0.04	17.17	0.01	1.925	32.95	0.74	11.5	88.4	0.1	-2.44	2.82	0.92	0.86	0.89	144895	5752	54	4656	0	0	0	logfile
✔	6PXW	20523	2021-09-03	2019-07-28	3.1	3.31	—	3.3	0.008	1.00	0.0	0.06	9.83	0.01	2.254	4.99	0.16	9.9	89.6	0.5	-4.04	0.76	0.82	4.11	3.3	0.002	0.56	0.0	0.04	13.74	0.00	2.285	4.72	0.00	6.8	93.2	0.0	-1.92	1.34	0.77	0.84	3.39	11198	1386	6	0	0	0	0	logfile
✔	6SE6	10152	2021-09-03	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.65	0.0	0.03	28.64	0.00	2.070	13.64	1.25	2.1	97.9	0.0	1.50	0.61	0.86	0.84	1.38	12068	771	11	290	0	0	0	logfile
✔	6J0M	9764	2021-09-03	2018-12-24	3.9	3.79	—	3.8	0.007	0.98	0.0	0.06	15.91	0.01	2.282	6.73	0.87	5.2	94.8	0.0	-4.05	0.52	0.82	1.83	3.8	0.002	0.63	0.0	0.04	17.78	0.00	2.231	11.37	0.14	5.8	94.2	0.0	-1.85	1.30	0.52	0.82	1.55	12585	1605	3	0	0	0	0	logfile
✘	6o96	0652	2021-09-03	2019-03-13	3.5	4.31	3.61	3.9	0.011	1.03	0.0	0.06	27.31	0.01	2.207	4.89	0.41	4.8	95.2	0.0	-4.03	0.83	0.79	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15194	1162	13	292	0	0	0	logfile
✔	6UiX	20790	2021-09-06	2019-10-01	3.5	4.38	—	3.7	0.009	0.96	0.0	0.05	13.69	0.01	2.204	8.14	0.00	4.0	96.0	0.0	-3.80	0.68	0.83	1.92	3.7	0.004	0.65	0.0	0.04	14.64	0.00	2.271	12.93	0.18	3.6	96.4	0.0	2.66	2.34	0.68	0.83	1.70	44198	6050	22	0	0	0	0	logfile

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