Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WD9	21628	2022-07-10	2020-03-31	3.7	4.05	4.07	3.9	0.006	0.94	0.0	0.08	13.39	0.01	1.313	11.30	0.54	10.7	87.6	1.7	-4.88	0.83	0.82	1.03	3.9	0.006	0.78	2.0	0.04	15.95	0.01	1.991	23.92	1.17	10.8	89.1	0.2	-2.41	0.67	0.84	0.83	0.69	152927	6371	62	4811	0	0	0	logfile
✔	6WDH	21636	2022-07-09	2020-03-31	4.3	3.96	5.24	3.9	0.006	1.00	0.0	0.08	13.22	0.01	2.227	11.46	1.02	12.5	85.3	2.1	-4.94	0.74	0.68	—	3.8	0.005	0.82	0.0	0.04	15.85	0.01	1.817	25.64	0.04	11.1	88.7	0.1	-2.97	1.40	0.82	0.82	—	150149	6024	59	4807	0	0	0	logfile
✔	6WD3	21622	2022-07-11	2020-03-31	3.6	3.96	3.97	3.8	0.006	0.95	0.0	0.08	13.44	0.01	1.315	11.61	0.96	12.0	86.3	1.8	-4.89	0.83	0.83	1.34	3.8	0.007	0.82	2.0	0.04	16.06	0.01	1.671	29.20	0.57	11.4	88.4	0.2	-2.74	1.48	0.84	0.84	0.97	153211	6408	62	4811	0	0	0	logfile
✔	6WDK	21639	2022-07-09	2020-03-31	3.6	3.94	3.93	3.8	0.006	0.95	0.0	0.08	13.22	0.01	1.311	8.14	0.51	11.0	87.2	1.8	-4.81	0.82	0.82	1.17	3.8	0.006	0.85	2.0	0.04	16.04	0.01	1.808	27.17	1.26	11.9	87.9	0.2	-2.83	1.51	0.83	0.84	1.04	150222	6025	60	4810	0	0	0	logfile
✔	6WDB	21630	2022-07-09	2020-03-31	4.0	4.30	5.11	4.1	0.006	0.99	0.0	0.08	13.33	0.01	2.211	11.49	0.77	11.9	86.2	1.9	-4.97	0.78	0.72	—	4.1	0.006	0.87	1.0	0.04	16.98	0.01	1.975	34.80	0.98	12.3	87.6	0.1	-3.09	0.85	0.81	0.77	—	150149	6024	59	4807	0	0	0	logfile
✘	6VFi	21173	2022-07-03	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	6WDC	21631	2022-07-09	2020-03-31	4.2	4.07	4.55	3.9	0.006	1.01	0.0	0.08	13.38	0.01	2.262	11.91	1.14	13.3	84.6	2.1	-5.10	0.77	0.73	—	3.9	0.006	0.86	1.0	0.04	16.55	0.01	1.973	32.18	0.06	13.6	86.3	0.1	-3.42	0.80	0.80	0.76	—	150149	6024	59	4807	0	0	0	logfile
✔	6WD4	21623	2022-07-10	2020-03-31	3.7	4.02	4.02	3.9	0.006	0.94	0.0	0.08	13.36	0.01	1.313	10.92	0.48	11.3	87.0	1.7	-4.79	0.83	0.83	0.81	3.8	0.007	0.83	1.0	0.04	15.80	0.01	1.998	26.18	1.78	11.3	88.5	0.2	-2.68	0.64	0.84	0.84	0.73	153083	6391	62	4811	0	0	0	logfile
✔	6WD6	21625	2022-07-10	2020-03-31	3.7	4.07	4.15	3.9	0.006	0.94	0.0	0.08	13.34	0.01	1.316	11.55	0.71	11.1	87.3	1.6	-4.98	0.83	0.82	0.92	3.9	0.008	0.86	4.0	0.04	15.83	0.01	1.765	27.36	0.61	9.7	90.1	0.2	-2.83	0.62	0.84	0.83	0.90	153103	6396	62	4811	0	0	0	logfile
✔	6WDM	21641	2022-07-09	2020-03-31	3.6	3.93	3.85	3.8	0.006	0.96	0.0	0.08	13.27	0.01	1.315	8.44	0.61	10.3	88.0	1.7	-4.77	0.82	0.83	1.11	3.7	0.009	0.88	2.0	0.04	16.07	0.01	1.755	27.28	1.26	11.2	88.6	0.2	-2.65	0.65	0.83	0.85	1.05	150220	6025	58	4810	0	0	0	logfile
✔	6WD0	21619	2022-07-09	2020-03-31	3.0	3.31	3.13	3.2	0.006	0.97	0.0	0.08	13.22	0.01	2.187	7.97	0.75	10.1	87.9	2.1	-4.83	0.83	0.86	2.03	3.2	0.005	0.75	0.0	0.04	15.39	0.01	2.006	15.39	4.60	9.3	90.4	0.3	-2.07	0.59	0.84	0.88	1.72	148592	6024	58	4734	0	0	0	logfile
✔	6Y9A	10734	2022-07-03	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	5.6	0.003	0.72	0.0	0.04	13.34	0.01	2.133	17.61	0.00	5.6	94.4	0.0	0.15	1.38	0.53	0.62	—	5948	776	4	0	0	0	0	logfile
✔	6WD7	21626	2022-07-10	2020-03-31	3.9	4.24	4.25	4.1	0.006	0.98	0.0	0.08	13.09	0.01	2.166	9.65	0.62	11.7	86.5	1.9	-4.81	0.81	0.80	0.76	4.0	0.007	0.84	1.0	0.04	16.25	0.01	1.717	31.80	0.46	11.3	88.6	0.1	-2.83	1.54	0.84	0.83	0.57	150887	6113	60	4809	0	0	0	logfile
✔	6WD5	21624	2022-07-11	2020-03-31	3.6	3.95	3.98	3.8	0.006	0.94	0.0	0.08	13.45	0.01	1.312	11.66	0.77	11.6	86.5	2.0	-4.87	0.83	0.83	1.21	3.8	0.007	0.80	2.0	0.04	15.97	0.01	2.029	23.71	0.86	11.4	88.5	0.2	-2.66	0.66	0.84	0.84	0.87	153135	6400	62	4811	0	0	0	logfile
✔	6WDi	21637	2022-07-09	2020-03-31	4.0	4.30	4.78	4.1	0.006	0.98	0.0	0.08	13.16	0.01	2.280	9.92	0.49	12.5	85.9	1.6	-4.84	0.77	0.71	—	4.1	0.005	0.79	1.0	0.04	16.97	0.01	1.982	28.11	0.91	11.4	88.5	0.1	-3.11	0.84	0.80	0.75	—	149628	5954	59	4807	0	0	0	logfile
✔	6WDL	21640	2022-07-09	2020-03-31	3.7	4.08	4.12	4.0	0.006	0.97	0.0	0.08	13.25	0.01	1.312	9.27	0.41	10.7	87.5	1.9	-4.85	0.81	0.81	1.06	3.9	0.008	0.87	2.0	0.04	16.15	0.01	1.935	28.42	1.30	12.0	87.8	0.2	-2.67	2.03	0.83	0.83	0.98	150220	6025	60	4810	0	0	0	logfile
✔	6WDJ	21638	2022-07-09	2020-03-31	3.7	4.11	4.20	4.0	0.006	0.96	0.0	0.08	13.25	0.01	2.162	8.63	0.41	11.0	87.3	1.7	-4.77	0.81	0.81	1.03	4.0	0.005	0.76	0.0	0.04	16.35	0.01	2.014	26.31	1.04	11.0	88.8	0.1	-2.72	1.53	0.83	0.83	0.64	150211	6024	59	4810	0	0	0	logfile
✔	6WDF	21634	2022-07-08	2020-03-31	3.3	3.73	3.77	3.6	0.006	0.94	0.0	0.08	13.51	0.01	1.310	11.88	0.94	11.6	86.6	1.8	-4.80	0.81	0.82	1.42	3.6	0.005	0.71	0.0	0.04	15.65	0.01	2.031	18.63	1.00	9.4	90.5	0.2	-2.31	1.48	0.81	0.84	0.99	148582	6025	59	4733	0	0	0	logfile
✔	6X2A	21999	2022-07-05	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.75	4.0	0.09	12.51	0.01	2.552	0.29	1.64	6.3	93.3	0.4	-1.33	0.81	0.82	3.41	3.8	0.004	0.61	0.0	0.04	13.32	0.00	2.215	6.50	0.13	4.0	95.9	0.0	0.25	2.19	0.79	0.80	2.85	21562	2875	3	0	0	0	0	logfile
✔	6X2C	22001	2022-07-05	2020-05-20	3.2	3.70	3.22	3.6	0.006	0.89	0.0	0.05	9.04	0.01	2.257	4.03	0.12	4.3	95.6	0.0	-3.93	0.76	0.77	3.04	3.6	0.006	0.86	0.0	0.04	12.25	0.01	2.181	9.88	0.08	3.8	96.2	0.0	-0.66	1.43	0.77	0.81	2.67	22827	2916	3	0	0	0	0	logfile

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