Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5YFP	6827	2022-12-18	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.10	0.0	0.04	10.51	0.00	2.070	27.46	0.20	19.1	80.6	0.3	-2.06	3.38	0.90	0.70	—	33096	5982	8	0	0	0	0	logfile
✔	5ANC	3147	2022-12-21	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.004	0.83	0.0	0.04	17.25	0.01	2.031	20.61	0.00	14.5	84.5	1.0	-3.66	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	3JD6	6425	2022-12-21	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	34.0	0.12	14.71	0.02	0.000	5.64	0.00	13.3	86.1	0.6	-3.14	0.59	0.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45781	2839	17	0	0	0	22542	logfile
✔	6QJP	4565	2022-12-11	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6XYP	10651	2022-12-11	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.84	5.05	4955	725	10	0	0	0	0	logfile
✔	6XYQ	10652	2022-12-11	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.85	4.77	4955	725	10	0	0	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✔	6i2N	0333	2022-12-14	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.58	0.0	0.04	14.79	0.00	2.134	8.41	0.39	4.5	95.5	0.0	0.62	2.27	0.77	0.84	1.84	18970	2352	14	21	0	0	0	logfile
✔	5AN9	3145	2022-12-20	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.57	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.87	0.0	0.05	17.57	0.01	2.003	13.84	1.16	11.8	87.5	0.6	-2.88	1.53	0.40	0.81	1.34	39693	1905	11	1162	0	0	0	logfile
✔	6PEW	20334	2022-12-22	2019-06-21	3.2	3.44	—	3.4	0.009	1.23	12.0	0.08	15.69	0.01	1.770	12.92	3.11	5.2	94.4	0.4	-4.44	0.79	0.85	2.46	3.4	0.003	0.62	0.0	0.05	16.58	0.00	2.149	8.31	0.22	5.0	95.0	0.0	-0.79	1.28	0.79	0.87	2.66	51348	6252	12	0	0	0	0	logfile
✔	6P4H	20249	2022-12-15	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	16.95	0.00	2.179	2.65	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.006	0.76	0.0	0.04	17.67	0.01	1.956	12.47	0.91	5.7	94.3	0.0	-0.91	0.66	0.78	0.82	2.02	79374	4862	36	1900	0	0	0	logfile
✔	6N06	9311	2022-12-16	2018-11-06	3.4	3.49	—	3.5	0.005	0.74	0.0	0.05	8.24	0.01	2.241	7.24	0.04	1.9	98.1	0.0	-4.01	0.76	0.86	3.99	3.4	0.004	0.65	0.0	0.05	14.63	0.00	2.162	11.14	0.44	1.9	98.1	0.0	-0.11	1.62	0.77	0.88	3.33	28197	3915	39	0	0	0	0	logfile
✔	6P4G	20248	2022-12-15	2019-05-27	3.1	3.17	3.35	3.1	0.010	1.45	4.0	0.10	17.35	0.00	2.232	2.68	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.003	0.62	0.0	0.04	17.57	0.00	2.072	12.14	0.52	5.1	94.9	0.0	-0.98	1.40	0.75	0.79	1.76	79374	4862	36	1900	0	0	0	logfile
✔	6MHQ	9116	2022-12-16	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.72	0.86	2.42	32640	2124	12	0	0	0	15264	logfile
✔	6MZU	9307	2022-12-18	2018-11-05	3.4	3.56	—	3.5	0.006	0.72	0.0	0.05	8.11	0.01	2.309	6.63	0.03	2.5	97.5	0.0	-4.73	0.78	0.85	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✔	6ND1	0440	2022-12-12	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.75	0.00	2.085	7.69	0.00	3.6	96.4	0.0	0.48	0.70	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6SEF	10154	2022-12-12	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.006	0.76	0.0	0.04	29.08	0.00	2.045	19.77	1.13	2.9	97.1	0.0	0.51	0.71	0.89	0.85	1.80	11919	751	11	290	0	0	0	logfile
✔	6iXH	9747	2022-12-22	2018-12-10	4.0	4.11	—	4.0	0.010	1.11	0.0	0.06	15.28	0.01	2.228	6.69	0.60	7.6	92.0	0.4	-4.89	0.84	0.87	—	4.0	0.008	0.93	0.0	0.05	16.70	0.00	2.099	17.20	1.00	7.7	92.1	0.1	-2.23	0.64	0.85	0.87	—	52280	6785	25	0	0	0	0	logfile
✔	6RQH	4982	2022-12-22	2019-05-15	3.7	3.79	—	3.8	0.008	1.07	0.0	0.06	13.10	0.01	2.036	8.21	0.58	10.5	89.3	0.1	-5.22	0.67	0.68	1.59	3.8	0.003	0.66	0.0	0.04	16.52	0.00	2.063	11.95	0.31	6.8	93.2	0.0	-2.09	2.49	0.68	0.67	1.25	50851	6151	20	78	0	0	0	logfile

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