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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5YFP | 6827 | 2022-12-18 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.10 | 0.0 | 0.04 | 10.51 | 0.00 | 2.070 | 27.46 | 0.20 | 19.1 | 80.6 | 0.3 | -2.06 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ANC | 3147 | 2022-12-21 | 2015-09-06 | 4.2 | 4.23 | — | 4.2 | 0.008 | 1.35 | 7.0 | 0.10 | 19.00 | 0.01 | 1.236 | 6.63 | 4.21 | 13.6 | 82.7 | 3.6 | -4.33 | 0.41 | 0.74 | — | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 17.25 | 0.01 | 2.031 | 20.61 | 0.00 | 14.5 | 84.5 | 1.0 | -3.66 | 1.57 | 0.39 | 0.70 | — | 46807 | 2801 | 11 | 1162 | 0 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 3JD6 | 6425 | 2022-12-21 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 34.0 | 0.12 | 14.71 | 0.02 | 0.000 | 5.64 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.59 | 0.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45781 | 2839 | 17 | 0 | 0 | 0 | 22542 | logfile |
✔ | 6QJP | 4565 | 2022-12-11 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.40 | 0.00 | 2.347 | 10.42 | 0.00 | 1.1 | 98.9 | 0.0 | -3.47 | 1.59 | 0.32 | 0.72 | 4.10 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2022-12-11 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.84 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYQ | 10652 | 2022-12-11 | 2020-01-30 | 3.09 | 3.30 | 2.79 | 3.3 | 0.007 | 0.71 | 0.0 | 0.05 | 12.97 | 0.00 | 2.130 | 9.08 | 0.00 | 3.5 | 96.5 | 0.0 | -4.52 | 0.46 | 0.84 | 3.97 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 15.09 | 0.00 | 2.232 | 8.09 | 0.82 | 2.3 | 97.7 | 0.0 | -3.28 | 0.44 | 0.47 | 0.85 | 4.77 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i2N | 0333 | 2022-12-14 | 2018-11-01 | 3.3 | 3.45 | 3.33 | 3.4 | 0.007 | 0.97 | 0.0 | 0.05 | 11.09 | 0.01 | 2.323 | 2.82 | 0.00 | 6.0 | 94.0 | 0.0 | -3.81 | 0.75 | 0.79 | 2.55 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.79 | 0.00 | 2.134 | 8.41 | 0.39 | 4.5 | 95.5 | 0.0 | 0.62 | 2.27 | 0.77 | 0.84 | 1.84 | 18970 | 2352 | 14 | 21 | 0 | 0 | 0 | logfile |
✔ | 5AN9 | 3145 | 2022-12-20 | 2015-09-06 | 3.3 | 3.29 | — | 3.3 | 0.007 | 1.22 | 5.0 | 0.10 | 17.04 | 0.01 | 1.192 | 3.57 | 2.32 | 9.1 | 88.0 | 2.9 | -3.68 | 0.38 | 0.81 | 1.98 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 17.57 | 0.01 | 2.003 | 13.84 | 1.16 | 11.8 | 87.5 | 0.6 | -2.88 | 1.53 | 0.40 | 0.81 | 1.34 | 39693 | 1905 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 6PEW | 20334 | 2022-12-22 | 2019-06-21 | 3.2 | 3.44 | — | 3.4 | 0.009 | 1.23 | 12.0 | 0.08 | 15.69 | 0.01 | 1.770 | 12.92 | 3.11 | 5.2 | 94.4 | 0.4 | -4.44 | 0.79 | 0.85 | 2.46 | 3.4 | 0.003 | 0.62 | 0.0 | 0.05 | 16.58 | 0.00 | 2.149 | 8.31 | 0.22 | 5.0 | 95.0 | 0.0 | -0.79 | 1.28 | 0.79 | 0.87 | 2.66 | 51348 | 6252 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P4H | 20249 | 2022-12-15 | 2019-05-27 | 3.2 | 3.13 | 3.20 | 3.1 | 0.010 | 1.43 | 0.0 | 0.10 | 16.95 | 0.00 | 2.179 | 2.65 | 2.17 | 6.6 | 92.8 | 0.7 | -3.62 | 0.67 | 0.75 | 2.61 | 3.1 | 0.006 | 0.76 | 0.0 | 0.04 | 17.67 | 0.01 | 1.956 | 12.47 | 0.91 | 5.7 | 94.3 | 0.0 | -0.91 | 0.66 | 0.78 | 0.82 | 2.02 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6N06 | 9311 | 2022-12-16 | 2018-11-06 | 3.4 | 3.49 | — | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 8.24 | 0.01 | 2.241 | 7.24 | 0.04 | 1.9 | 98.1 | 0.0 | -4.01 | 0.76 | 0.86 | 3.99 | 3.4 | 0.004 | 0.65 | 0.0 | 0.05 | 14.63 | 0.00 | 2.162 | 11.14 | 0.44 | 1.9 | 98.1 | 0.0 | -0.11 | 1.62 | 0.77 | 0.88 | 3.33 | 28197 | 3915 | 39 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P4G | 20248 | 2022-12-15 | 2019-05-27 | 3.1 | 3.17 | 3.35 | 3.1 | 0.010 | 1.45 | 4.0 | 0.10 | 17.35 | 0.00 | 2.232 | 2.68 | 3.36 | 8.9 | 90.2 | 0.9 | -4.06 | 0.67 | 0.74 | 2.52 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 17.57 | 0.00 | 2.072 | 12.14 | 0.52 | 5.1 | 94.9 | 0.0 | -0.98 | 1.40 | 0.75 | 0.79 | 1.76 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6MHQ | 9116 | 2022-12-16 | 2018-09-18 | 3.4 | 3.50 | — | 3.5 | 0.018 | 0.80 | 0.0 | 0.08 | 12.18 | 0.00 | 2.210 | 6.75 | 3.14 | 5.8 | 94.2 | 0.0 | -1.67 | 0.73 | 0.83 | 2.60 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 15.39 | 0.00 | 2.088 | 11.34 | 0.84 | 5.0 | 95.0 | 0.0 | 2.21 | 1.06 | 0.72 | 0.86 | 2.42 | 32640 | 2124 | 12 | 0 | 0 | 0 | 15264 | logfile |
✔ | 6MZU | 9307 | 2022-12-18 | 2018-11-05 | 3.4 | 3.56 | — | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 8.11 | 0.01 | 2.309 | 6.63 | 0.03 | 2.5 | 97.5 | 0.0 | -4.73 | 0.78 | 0.85 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND1 | 0440 | 2022-12-12 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.75 | 0.00 | 2.085 | 7.69 | 0.00 | 3.6 | 96.4 | 0.0 | 0.48 | 0.70 | 0.59 | 0.81 | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SEF | 10154 | 2022-12-12 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.92 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.5 | 0.006 | 0.76 | 0.0 | 0.04 | 29.08 | 0.00 | 2.045 | 19.77 | 1.13 | 2.9 | 97.1 | 0.0 | 0.51 | 0.71 | 0.89 | 0.85 | 1.80 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6iXH | 9747 | 2022-12-22 | 2018-12-10 | 4.0 | 4.11 | — | 4.0 | 0.010 | 1.11 | 0.0 | 0.06 | 15.28 | 0.01 | 2.228 | 6.69 | 0.60 | 7.6 | 92.0 | 0.4 | -4.89 | 0.84 | 0.87 | — | 4.0 | 0.008 | 0.93 | 0.0 | 0.05 | 16.70 | 0.00 | 2.099 | 17.20 | 1.00 | 7.7 | 92.1 | 0.1 | -2.23 | 0.64 | 0.85 | 0.87 | — | 52280 | 6785 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RQH | 4982 | 2022-12-22 | 2019-05-15 | 3.7 | 3.79 | — | 3.8 | 0.008 | 1.07 | 0.0 | 0.06 | 13.10 | 0.01 | 2.036 | 8.21 | 0.58 | 10.5 | 89.3 | 0.1 | -5.22 | 0.67 | 0.68 | 1.59 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.52 | 0.00 | 2.063 | 11.95 | 0.31 | 6.8 | 93.2 | 0.0 | -2.09 | 2.49 | 0.68 | 0.67 | 1.25 | 50851 | 6151 | 20 | 78 | 0 | 0 | 0 | logfile |