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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8F0U | 28781 | 2024-03-16 | 2022-11-04 | 3.1 | 3.37 | 3.22 | 3.6 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.67 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.31 | 0.31 | 0.91 | 3.5 | 0.005 | 0.69 | 0.0 | 0.05 | 14.09 | 0.00 | 1.903 | 8.39 | 1.73 | 6.6 | 93.4 | 0.0 | -1.02 | 2.15 | 0.53 | 0.67 | 1.75 | 72240 | 4848 | 36 | 0 | 0 | 0 | 36756 | logfile |
✔ | 7WSo | 32762 | 2024-03-11 | 2022-01-30 | 3.03 | 3.25 | — | 3.3 | 0.014 | 1.29 | 0.0 | 0.07 | 10.67 | 0.01 | 2.351 | 3.25 | 0.85 | 8.7 | 91.3 | 0.0 | -2.93 | 0.63 | 0.81 | 3.97 | 3.2 | 0.005 | 0.70 | 0.0 | 0.05 | 13.78 | 0.00 | 2.190 | 3.99 | 2.55 | 5.3 | 94.7 | 0.0 | -0.42 | 1.23 | 0.67 | 0.85 | 2.99 | 6204 | 780 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TRE | 26087 | 2024-03-16 | 2022-01-28 | 3.5 | 3.56 | — | 3.5 | 0.006 | 0.77 | 0.0 | 0.05 | 21.80 | 0.01 | 2.188 | 7.45 | 0.11 | 6.4 | 93.6 | 0.0 | -0.75 | 0.77 | 0.77 | 2.23 | 3.5 | 0.003 | 0.57 | 0.0 | 0.03 | 21.80 | 0.00 | 2.215 | 7.28 | 1.38 | 4.1 | 95.9 | 0.0 | 0.62 | 0.73 | 0.78 | 0.83 | 2.08 | 13411 | 1086 | 4 | 224 | 0 | 0 | 0 | logfile |
✔ | 7Lo8 | 23464 | 2024-03-11 | 2021-02-09 | 3.16 | 3.80 | — | 3.7 | 0.006 | 0.97 | 0.0 | 0.05 | 14.48 | 0.01 | 2.152 | 8.93 | 0.00 | 9.4 | 90.5 | 0.1 | -2.97 | 0.57 | 0.71 | 2.78 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 15.99 | 0.01 | 2.078 | 12.31 | 2.04 | 8.4 | 91.6 | 0.0 | -0.94 | 1.18 | 0.56 | 0.70 | 1.23 | 6205 | 815 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YN5 | 10849 | 2024-03-11 | 2020-04-10 | 2.7 | 2.87 | 2.79 | 2.8 | 0.008 | 0.83 | 0.0 | 0.05 | 12.22 | 0.01 | 2.247 | 3.71 | 0.03 | 1.9 | 98.1 | 0.0 | -0.33 | 0.84 | 0.88 | 4.96 | 2.8 | 0.005 | 0.58 | 0.0 | 0.05 | 14.09 | 0.00 | 2.147 | 6.15 | 1.13 | 1.7 | 98.3 | 0.0 | 0.72 | 0.29 | 0.85 | 0.90 | 4.44 | 56994 | 7110 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GSZ | 34244 | 2024-03-10 | 2022-09-07 | 3.65 | 3.14 | 3.68 | 3.8 | 0.006 | 0.86 | 0.0 | 0.05 | 15.61 | 0.01 | 2.241 | 12.76 | 0.39 | 2.7 | 97.3 | 0.0 | -5.38 | 0.62 | 0.76 | 1.72 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.68 | 0.00 | 2.256 | 10.29 | 4.07 | 4.4 | 95.6 | 0.0 | -0.44 | 0.77 | 0.62 | 0.76 | 0.90 | 4870 | 620 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y9T | 33691 | 2024-03-11 | 2022-06-26 | 3.1 | 3.31 | 3.07 | 3.3 | 0.018 | 1.56 | 18.0 | 0.09 | 11.12 | 0.01 | 2.305 | 4.09 | 0.96 | 6.7 | 93.3 | 0.0 | -6.23 | 0.69 | 0.87 | 3.51 | 3.3 | 0.002 | 0.64 | 0.0 | 0.04 | 13.47 | 0.00 | 2.233 | 5.30 | 1.92 | 4.1 | 95.9 | 0.0 | -1.38 | 0.58 | 0.67 | 0.87 | 3.12 | 7726 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RHY | 24471 | 2024-03-11 | 2021-07-19 | 3.91 | 4.12 | 4.00 | 4.0 | 0.005 | 0.80 | 0.0 | 0.05 | 21.98 | 0.01 | 2.404 | 3.31 | 0.80 | 2.0 | 98.0 | 0.0 | -1.06 | 0.74 | 0.76 | 2.28 | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 23.04 | 0.00 | 2.282 | 5.99 | 2.40 | 4.0 | 96.0 | 0.0 | 1.79 | 0.91 | 0.74 | 0.77 | 1.98 | 6350 | 301 | 2 | 49 | 0 | 0 | 2957 | logfile |
✔ | 7BTP | 30181 | 2024-03-20 | 2020-04-02 | 4.01 | 4.31 | — | 4.1 | 0.007 | 1.12 | 0.0 | 0.06 | 11.60 | 0.01 | 2.220 | 7.30 | 0.59 | 11.6 | 88.3 | 0.0 | -4.46 | 0.83 | 0.71 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 12.49 | 0.00 | 2.096 | 13.76 | 0.05 | 9.1 | 90.9 | 0.0 | -1.28 | 1.08 | 0.86 | 0.79 | — | 20371 | 2534 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o1D | 0586 | 2024-03-15 | 2019-02-19 | 3.395 | 3.57 | — | 3.5 | 0.010 | 0.95 | 1.0 | 0.05 | 28.02 | 0.01 | 2.317 | 2.17 | 0.00 | 3.4 | 96.6 | 0.0 | -4.72 | 0.79 | 0.87 | 4.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11982 | 761 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7V90 | 31806 | 2024-03-15 | 2021-08-24 | 3.5 | 3.21 | 3.42 | 3.5 | 0.005 | 0.73 | 3.0 | 0.04 | 26.09 | 0.00 | 2.219 | 8.45 | 4.01 | 4.7 | 94.8 | 0.5 | -0.16 | 0.66 | 0.78 | 2.00 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 27.20 | 0.00 | 2.212 | 6.14 | 2.62 | 4.1 | 95.9 | 0.0 | 2.51 | 1.09 | 0.73 | 0.84 | 2.26 | 12148 | 781 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7VBi | 31880 | 2024-03-14 | 2021-08-31 | 3.0 | 3.19 | — | 3.2 | 0.011 | 1.13 | 0.0 | 0.06 | 14.91 | 0.01 | 2.181 | 4.22 | 0.81 | 5.6 | 94.4 | 0.0 | -3.46 | 0.66 | 0.80 | 3.10 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 17.11 | 0.00 | 2.141 | 7.68 | 2.54 | 4.3 | 95.7 | 0.0 | 0.20 | 1.19 | 0.66 | 0.80 | 2.32 | 9223 | 1158 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SoF | 10273 | 2024-03-21 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.38 | 0.00 | 1.979 | 15.26 | 0.00 | 13.9 | 86.1 | 0.0 | -3.88 | 1.44 | 0.82 | 0.72 | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✔ | 7ADJ | 11727 | 2024-03-14 | 2020-09-15 | 2.8 | 3.02 | 2.79 | 3.0 | 0.014 | 1.99 | 4.0 | 0.11 | 14.68 | 0.01 | 2.562 | 0.51 | 0.18 | 6.9 | 93.1 | 0.0 | -2.18 | 0.34 | 0.70 | 3.50 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 17.11 | 0.00 | 2.112 | 6.28 | 2.94 | 6.5 | 93.5 | 0.0 | -1.08 | 1.47 | 0.40 | 0.76 | 2.99 | 9710 | 613 | 1 | 0 | 0 | 0 | 4790 | logfile |
✔ | 7AHC | 11782 | 2024-03-11 | 2020-09-24 | 3.3 | 3.39 | 3.29 | 3.4 | 0.008 | 0.61 | 0.0 | 0.04 | 15.79 | 0.00 | 2.141 | 13.60 | 0.11 | 8.5 | 91.5 | 0.0 | -4.17 | 0.67 | 0.79 | 2.74 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 16.70 | 0.00 | 2.091 | 10.20 | 3.24 | 3.9 | 96.1 | 0.0 | 0.15 | 0.64 | 0.68 | 0.84 | 1.87 | 8170 | 1064 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ET1 | 28583 | 2024-03-23 | 2022-10-15 | 4.48 | 5.31 | 5.46 | 4.9 | 0.003 | 0.82 | 0.0 | 0.05 | 15.01 | 0.00 | 2.180 | 29.82 | 0.00 | 11.5 | 88.5 | 0.0 | -3.55 | 0.75 | 0.57 | — | 4.9 | 0.004 | 0.79 | 0.0 | 0.05 | 15.13 | 0.01 | 2.119 | 32.91 | 0.02 | 13.3 | 86.7 | 0.0 | -3.52 | 0.67 | 0.76 | 0.61 | — | 35976 | 4368 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LHS | 0896 | 2024-03-19 | 2019-12-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22737 | 1456 | 2 | 0 | 0 | 0 | 11313 | logfile |
✔ | 7KTU | 23030 | 2024-03-11 | 2020-11-24 | 4.15 | 4.49 | — | 4.2 | 0.006 | 1.05 | 0.0 | 0.05 | 12.61 | 0.01 | 2.259 | 12.91 | 0.37 | 4.3 | 95.7 | 0.0 | -5.35 | 0.81 | 0.79 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.20 | 0.00 | 2.120 | 19.88 | 0.00 | 3.6 | 96.4 | 0.0 | 0.22 | 0.88 | 0.80 | 0.77 | — | 7577 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oNL | 12997 | 2024-03-16 | 2021-05-25 | 3.9 | 3.35 | 3.58 | 3.6 | 0.002 | 0.38 | 0.0 | 0.04 | 9.17 | 0.00 | 2.180 | 5.51 | 0.41 | 1.5 | 98.5 | 0.0 | 2.97 | 0.64 | 0.80 | 2.02 | 3.6 | 0.004 | 0.84 | 0.0 | 0.04 | 13.75 | 0.00 | 2.094 | 11.26 | 3.05 | 1.5 | 98.5 | 0.0 | 2.31 | 0.55 | 0.64 | 0.81 | 1.43 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5i08 | 8069 | 2024-03-19 | 2016-02-03 | 4.04 | 4.14 | 3.96 | 4.1 | 0.014 | 1.74 | 3.0 | 0.09 | 8.79 | 0.01 | 2.174 | 3.14 | 0.00 | 7.0 | 92.1 | 0.8 | 0.56 | 0.70 | 0.71 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 12.23 | 0.00 | 2.180 | 9.00 | 0.08 | 8.7 | 90.8 | 0.6 | -1.15 | 1.59 | 0.73 | 0.79 | — | 22683 | 2874 | 3 | 0 | 0 | 0 | 0 | logfile |