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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J7Z | 6057 | 2024-03-19 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.10 | 23.57 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.005 | 0.77 | 1.0 | 0.04 | 23.13 | 0.01 | 1.856 | 14.47 | 6.24 | 12.3 | 85.8 | 1.9 | -2.83 | 1.84 | 0.78 | 0.79 | 0.91 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 3J80 | 2764 | 2024-03-17 | 2014-08-28 | 3.75 | 3.87 | 3.84 | 3.8 | 0.007 | 1.36 | 43.0 | 0.11 | 26.05 | 0.01 | 1.747 | 9.35 | 13.53 | 12.2 | 83.2 | 4.6 | -2.33 | 0.79 | 0.86 | 0.90 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 24.75 | 0.01 | 1.793 | 20.61 | 7.27 | 11.4 | 87.2 | 1.4 | -1.71 | 1.59 | 0.78 | 0.82 | 0.65 | 77716 | 5039 | 41 | 1779 | 70 | 0 | 0 | logfile |
✔ | 3J81 | 2763 | 2024-03-18 | 2014-08-29 | 4.0 | 4.19 | — | 4.0 | 0.007 | 1.30 | 64.0 | 0.10 | 25.85 | 0.01 | 1.076 | 7.72 | 12.47 | 11.6 | 83.5 | 4.9 | -2.31 | 0.79 | 0.84 | — | 4.0 | 0.005 | 0.85 | 3.0 | 0.04 | 25.03 | 0.01 | 1.864 | 24.43 | 5.64 | 10.9 | 87.5 | 1.5 | -1.84 | 2.06 | 0.79 | 0.82 | — | 83760 | 5686 | 48 | 1876 | 84 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2024-03-14 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.46 | 0.00 | 2.181 | 8.86 | 5.51 | 0.4 | 99.6 | 0.0 | 3.23 | 1.98 | 0.81 | 0.79 | 0.27 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 3J8A | 6124 | 2024-03-16 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.27 | 0.0 | 0.05 | 14.88 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 16.73 | 0.00 | 1.941 | 15.12 | 6.99 | 6.0 | 93.1 | 0.8 | -2.20 | 0.49 | 0.72 | 0.83 | 1.54 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2024-03-11 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2024-03-16 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.17 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.88 | 0.0 | 0.04 | 14.41 | 0.00 | 2.094 | 16.30 | 0.00 | 9.4 | 89.8 | 0.8 | -1.91 | 1.28 | 0.64 | 0.71 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3J92 | 2832 | 2024-03-23 | 2014-12-02 | 3.6 | 3.74 | — | 3.7 | 0.010 | 1.59 | 52.0 | 0.11 | 26.72 | 0.01 | 1.186 | 15.75 | 18.87 | 11.1 | 85.7 | 3.2 | -3.22 | 0.79 | 0.74 | 0.42 | 3.7 | 0.007 | 0.88 | 0.0 | 0.05 | 24.87 | 0.01 | 1.037 | 16.76 | 5.78 | 9.0 | 90.5 | 0.5 | -1.78 | 1.10 | 0.86 | 0.86 | 1.69 | 146386 | 7246 | 65 | 4013 | 593 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2024-03-18 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.97 | 0.0 | 0.07 | 17.14 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.003 | 0.77 | 0.0 | 0.04 | 14.74 | 0.00 | 1.688 | 15.69 | 0.05 | 4.6 | 94.9 | 0.5 | 0.58 | 2.62 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2024-03-19 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 2.277 | 7.02 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.74 | 0.87 | 2.67 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.42 | 0.00 | 2.176 | 7.93 | 3.35 | 2.2 | 97.8 | 0.0 | 0.04 | 1.43 | 0.76 | 0.86 | 3.13 | 23296 | 2961 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2024-03-10 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.82 | 0.0 | 0.04 | 17.81 | 0.00 | 2.186 | 15.94 | 5.11 | 6.7 | 92.7 | 0.5 | -1.39 | 2.36 | 0.75 | 0.84 | 2.66 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2024-03-10 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 17.77 | 0.00 | 2.236 | 10.82 | 4.58 | 7.8 | 91.7 | 0.6 | 0.72 | 1.59 | 0.73 | 0.86 | 3.06 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9G | 2699 | 2024-03-16 | 2015-01-16 | 3.5 | 2.75 | — | 3.5 | 0.011 | 1.34 | 0.0 | 0.06 | 10.86 | 0.01 | 2.365 | 1.99 | 0.00 | 3.6 | 95.7 | 0.7 | -0.80 | 0.40 | 0.65 | 0.79 | 3.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.41 | 0.01 | 2.078 | 10.45 | 3.57 | 2.4 | 97.4 | 0.1 | 0.70 | 1.16 | 0.42 | 0.80 | 1.80 | 132930 | 16710 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9i | 5623 | 2024-03-25 | 2015-02-02 | 3.3 | 3.34 | 2.96 | 3.2 | 0.034 | 3.61 | 574.0 | 0.23 | 18.10 | 0.03 | 1.922 | 5.67 | 9.27 | 8.0 | 90.1 | 1.9 | -3.61 | 0.80 | 0.79 | 3.08 | 3.2 | 0.006 | 0.82 | 2.0 | 0.05 | 17.90 | 0.00 | 2.081 | 13.74 | 4.92 | 3.4 | 96.3 | 0.2 | 0.23 | 1.47 | 0.87 | 0.89 | 2.49 | 46228 | 5978 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2024-03-18 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.77 | 0.00 | 1.878 | 14.85 | 1.30 | 6.9 | 92.8 | 0.3 | 2.24 | 3.87 | 0.59 | 0.76 | 2.25 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9K | 2870 | 2024-03-15 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.04 | 13.74 | 0.00 | 2.049 | 18.15 | 0.00 | 5.8 | 94.1 | 0.2 | -1.17 | 1.16 | 0.70 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2024-03-11 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.79 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.045 | 3.09 | 64.0 | 0.12 | 21.30 | 0.02 | 1.887 | 101.09 | 29.26 | 40.4 | 58.0 | 1.7 | -7.66 | 2.88 | 0.73 | 0.82 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 3J9M | 2876 | 2024-03-03 | 2015-02-08 | 3.5 | 3.59 | 3.50 | 3.5 | 0.007 | 1.35 | 38.0 | 0.09 | 22.51 | 0.01 | 1.242 | 5.66 | 9.06 | 8.2 | 89.4 | 2.4 | -1.72 | 0.66 | 0.76 | 1.82 | 3.5 | 0.004 | 0.74 | 6.0 | 0.04 | 21.60 | 0.01 | 1.902 | 12.54 | 4.54 | 6.3 | 93.1 | 0.6 | 0.26 | 0.84 | 0.75 | 0.83 | 1.48 | 158384 | 12902 | 97 | 2454 | 309 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2024-03-17 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.85 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.35 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.1 | 0.004 | 0.95 | 0.0 | 0.04 | 14.03 | 0.00 | 2.124 | 18.39 | 0.00 | 9.4 | 89.7 | 0.9 | -1.66 | 1.17 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2024-03-20 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.71 | 0.00 | 2.025 | 15.05 | 6.23 | 11.5 | 87.0 | 1.5 | -1.78 | 0.87 | 0.61 | 0.82 | 2.51 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |