Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J80	2764	2022-12-15	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.38	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.90	0.0	0.04	20.59	0.01	1.697	26.67	1.57	12.1	86.4	1.4	-1.94	1.63	0.78	0.82	0.70	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2022-12-16	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.78	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.004	0.79	0.0	0.04	20.74	0.01	1.831	23.36	0.71	11.2	87.4	1.4	-1.88	2.09	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	3J89	6123	2022-12-12	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2022-12-13	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.004	0.84	0.0	0.05	16.43	0.00	1.925	14.95	1.23	6.4	92.8	0.8	-2.24	1.24	0.72	0.83	1.55	15800	1835	12	0	280	0	0	logfile
✘	3J8i	6179	2022-12-18	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.34	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14800	1875	10	0	10	0	0	logfile
✔	3J94	6204	2022-12-14	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.004	0.80	0.0	0.04	13.91	0.01	1.597	17.25	0.00	5.1	94.4	0.6	0.53	2.61	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2022-12-15	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	0.248	26.65	6.13	4.8	95.2	0.0	-0.81	0.69	0.79	2.57	3.0	0.006	0.91	3.0	0.05	16.54	0.01	1.702	20.56	3.00	4.6	95.3	0.1	0.04	0.99	0.72	0.84	2.98	26624	3384	8	0	16	0	0	logfile
✔	3J9D	6239	2022-12-11	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.82	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.87	0.0	0.05	17.66	0.00	2.179	16.10	0.45	8.5	90.8	0.7	-1.64	1.60	0.75	0.85	3.08	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2022-12-11	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.86	0.0	0.04	17.74	0.00	2.228	10.46	0.46	7.4	91.7	1.0	0.84	1.22	0.74	0.86	3.56	4098	520	1	0	0	0	0	logfile
✔	3J9i	5623	2022-12-21	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.67	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.005	0.82	0.0	0.05	17.64	0.00	2.147	13.66	0.78	3.3	96.4	0.3	0.26	0.85	0.87	0.89	2.53	46228	5978	28	0	0	0	0	logfile
✔	3J9J	5778	2022-12-14	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	3J9P	6267	2022-12-13	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	3J9Q	6270	2022-12-19	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99648	13224	48	0	0	0	0	logfile
✔	3J9R	6271	2022-12-19	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.005	0.75	0.0	0.04	15.72	0.00	2.013	15.42	0.65	10.0	89.0	1.0	-2.00	1.33	0.63	0.83	1.97	103824	13788	36	0	0	0	0	logfile
✔	3J9S	6272	2022-12-13	2015-02-19	2.6	3.84	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.104	287.40	6.86	1.3	98.0	0.8	1.95	0.60	0.63	2.26	3.6	0.032	2.66	41.0	0.17	20.84	0.02	1.083	172.48	7.64	19.4	79.1	1.5	-3.76	4.12	0.56	0.66	1.10	13084	1588	4	0	20	420	0	logfile
✔	3J9X	6310	2022-12-14	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.8	0.005	0.76	0.0	0.04	16.22	0.01	2.070	21.17	0.53	2.4	97.6	0.0	1.81	1.19	0.63	0.79	2.10	70702	7424	60	696	0	0	0	logfile
✔	3JA7	6324	2022-12-21	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	38.36	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.81	0.0	0.04	16.12	0.00	2.244	10.58	0.16	5.7	93.6	0.7	-1.28	1.71	0.77	0.81	1.48	41280	5136	12	0	0	0	0	logfile
✘	3JA8	6338	2022-12-18	2015-05-09	3.8	3.83	—	3.8	0.014	1.56	0.0	0.06	10.98	0.01	1.749	29.26	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	3JAC	6343	2022-12-13	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.91	0.01	1.933	77.25	0.00	27.5	71.1	1.4	-5.52	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAD	6344	2022-12-12	2015-06-08	3.9	2.16	—	3.8	0.008	1.32	0.0	0.06	8.46	0.00	2.250	17.07	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.004	0.80	0.0	0.04	12.88	0.00	2.172	19.50	0.26	5.1	94.9	0.0	-0.14	1.24	0.70	0.78	0.46	12705	1685	15	0	15	0	0	logfile

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