Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J6Q	5926	2021-06-04	2014-03-20	3.8	4.07	—	4.1	0.010	1.13	0.0	0.06	11.65	0.01	1.279	18.44	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.003	0.85	0.0	0.05	15.38	0.01	2.110	11.31	0.42	10.3	89.0	0.6	-2.73	2.93	0.55	0.74	1.56	42575	5300	10	0	0	0	0	logfile
✔	3J79	2660	2021-06-05	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.37	11.66	7.2	90.4	2.4	-1.45	0.53	0.70	0.94	3.2	0.005	0.71	0.0	0.04	17.99	0.01	1.880	14.19	0.89	6.4	93.1	0.5	-0.47	1.00	0.66	0.85	1.81	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2021-06-01	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.40	49.0	0.10	19.80	0.01	1.715	4.44	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.68	0.0	0.04	18.17	0.01	1.935	16.40	0.97	8.5	90.3	1.2	-1.86	2.70	0.40	0.78	0.99	68866	4106	35	1682	69	0	0	logfile
✔	3J7H	5995	2021-06-04	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.16	0.0	0.06	17.98	0.01	1.085	130.49	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.006	0.78	0.0	0.05	17.63	0.01	2.040	14.08	0.54	3.8	96.2	0.0	-0.16	1.64	0.80	0.87	2.74	32828	4088	8	0	4	0	0	logfile
✔	3J7L	6000	2021-06-03	2014-07-18	3.8	3.16	—	3.8	0.010	1.33	0.0	0.06	10.57	0.01	2.009	21.67	0.27	5.3	92.1	2.5	-0.59	0.69	0.78	2.14	3.3	0.006	0.87	0.0	0.05	17.35	0.01	2.106	13.23	1.71	7.5	91.8	0.7	-1.15	1.00	0.72	0.81	1.91	216780	28620	180	0	0	0	0	logfile
✔	3J7M	6000	2021-06-03	2014-07-18	3.8	3.16	—	3.9	0.014	1.63	0.0	0.11	11.98	0.01	0.337	30.08	1.61	12.4	85.4	2.2	-1.80	0.73	0.78	2.06	3.3	0.017	0.93	0.0	0.05	17.32	0.01	1.406	16.67	1.60	9.5	90.0	0.5	-2.29	1.59	0.72	0.80	1.74	217080	28680	180	0	0	0	0	logfile
✔	3J7N	6000	2021-06-03	2014-07-18	3.8	3.16	—	3.9	0.014	1.65	120.0	0.11	11.81	0.01	0.277	35.08	1.88	11.4	85.9	2.8	-1.51	0.73	0.78	2.08	3.3	0.038	1.05	2.0	0.05	17.81	0.01	1.720	21.57	1.51	8.9	89.9	1.1	-1.71	1.56	0.71	0.79	1.58	217080	28680	180	0	0	0	0	logfile
✔	3J7Y	2762	2021-06-03	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.53	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.74	0.0	0.04	18.53	0.01	1.925	11.76	0.41	6.9	92.5	0.6	-0.18	1.57	0.75	0.84	1.85	94121	7469	56	1530	208	0	0	logfile
✔	3J7Z	6057	2021-06-03	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.55	0.01	1.426	11.23	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.008	0.99	0.0	0.05	16.73	0.01	1.963	20.91	1.76	15.8	82.3	1.9	-3.45	1.93	0.80	0.82	0.93	90700	3453	36	2975	1	0	0	logfile
✘	3J80	2764	2021-06-02	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.30	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2021-06-02	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.64	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.005	0.85	0.0	0.04	20.82	0.01	1.854	28.42	0.98	12.1	86.4	1.4	-1.99	2.12	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	3J89	6123	2021-06-01	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.50	0.0	0.03	21.08	0.00	2.048	10.75	0.75	1.0	99.0	0.0	3.06	1.99	0.82	0.79	0.39	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2021-06-02	2014-10-08	3.7	3.90	—	3.8	0.006	1.28	0.0	0.05	14.94	0.01	2.145	19.38	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.005	0.85	0.0	0.05	16.56	0.01	1.947	16.93	1.04	6.7	92.5	0.8	-2.43	0.54	0.71	0.83	1.73	15800	1835	12	0	280	0	0	logfile
✔	3J8H	2807	2021-06-04	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.07	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	3.8	0.005	0.87	0.0	0.04	14.33	0.00	2.079	19.97	0.66	6.4	93.1	0.5	-0.11	2.12	0.74	0.78	1.06	111160	12796	12	0	2276	0	0	logfile
✔	3J8i	6179	2021-06-02	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	74.63	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.25	0.00	2.063	16.91	0.00	9.4	89.8	0.8	-1.79	1.75	0.64	0.70	—	14800	1875	10	0	10	0	0	logfile
✔	3J92	2832	2021-06-03	2014-12-02	3.6	3.74	—	3.7	0.010	1.59	52.0	0.11	21.53	0.01	1.186	15.60	18.87	11.1	85.7	3.2	-3.22	0.79	0.74	0.42	3.7	0.004	0.73	0.0	0.04	18.57	0.01	1.220	14.07	0.57	7.5	92.0	0.5	-1.32	1.20	0.86	0.85	1.75	146386	7246	65	4013	593	0	0	logfile
✘	3J94	6204	2021-06-03	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	30.86	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2021-06-03	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	6.87	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.004	0.61	0.0	0.05	16.52	0.00	2.201	8.00	3.39	3.0	97.0	0.0	0.21	1.99	0.76	0.86	3.33	23296	2961	7	0	14	0	0	logfile
✔	3J9D	6239	2021-06-01	2015-01-09	3.3	2.70	—	3.4	0.027	2.06	0.0	0.08	20.57	0.01	2.034	23.58	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.92	0.0	0.05	18.08	0.00	2.160	17.66	0.60	8.2	91.1	0.7	-1.67	2.37	0.77	0.85	3.38	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2021-06-01	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.08	24.26	9.7	87.0	3.3	-3.45	0.77	0.88	3.26	3.3	0.003	0.73	0.0	0.04	18.18	0.00	2.134	10.82	0.46	7.6	91.9	0.6	0.98	1.24	0.73	0.84	3.18	4098	520	1	0	0	0	0	logfile

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