Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J7H	5995	2022-07-06	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	133.11	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.006	0.81	0.0	0.04	17.49	0.01	2.005	14.79	0.77	3.8	96.2	0.0	0.02	1.65	0.80	0.87	2.54	32828	4088	8	0	4	0	0	logfile
✔	3J7Y	2762	2022-07-06	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.68	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.77	0.0	0.04	18.54	0.01	1.526	12.46	0.27	6.8	92.6	0.6	-0.20	3.10	0.73	0.83	2.01	94121	7469	56	1530	208	0	0	logfile
✘	3J7Z	6057	2022-07-05	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.07	15.55	0.01	1.208	11.71	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90700	3453	36	2975	1	0	0	logfile
✔	3J80	2764	2022-07-05	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.38	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	1.0	0.04	20.61	0.01	1.505	24.70	0.42	11.5	87.0	1.5	-1.95	1.62	0.78	0.82	0.92	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2022-07-05	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.78	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.005	0.84	0.0	0.04	20.82	0.01	1.749	27.74	0.98	12.1	86.4	1.5	-2.01	2.08	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	3J89	6123	2022-07-03	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✘	3J8A	6124	2022-07-04	2014-10-08	3.7	3.90	—	3.8	0.006	1.28	0.0	0.05	14.94	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15800	1835	12	0	280	0	0	logfile
✔	3J8H	2807	2022-07-03	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.73	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	3.8	0.004	0.82	2.0	0.04	14.02	0.00	2.071	17.90	0.48	5.8	93.8	0.4	0.03	2.10	0.73	0.76	0.94	111160	12796	12	0	2276	0	0	logfile
✔	3J8i	6179	2022-07-04	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.34	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.12	0.00	2.079	17.80	0.00	11.3	88.2	0.5	-2.07	1.75	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✘	3J92	2832	2022-07-08	2014-12-02	3.6	3.74	—	3.7	0.010	1.59	52.0	0.11	21.53	0.01	1.186	15.82	18.87	11.1	85.7	3.2	-3.22	0.79	0.74	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146386	7246	65	4013	593	0	0	logfile
✔	3J94	6204	2022-07-05	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.004	0.82	0.0	0.04	13.92	0.01	1.560	18.95	0.00	5.5	94.0	0.5	0.45	2.62	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2022-07-05	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	8.15	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	3J9D	6239	2022-07-03	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.82	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.86	0.0	0.04	17.39	0.00	2.179	16.27	0.30	7.0	92.2	0.8	-1.73	2.37	0.76	0.84	3.01	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2022-07-03	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.83	0.0	0.04	17.71	0.00	2.229	9.85	0.46	7.8	91.3	1.0	0.97	1.23	0.74	0.85	3.56	4098	520	1	0	0	0	0	logfile
✔	3J9G	2699	2022-07-06	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	2.17	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.85	3.1	0.004	0.74	0.0	0.04	16.40	0.01	2.097	10.79	0.58	2.5	97.4	0.1	0.64	1.17	0.42	0.80	2.01	132930	16710	60	0	0	0	0	logfile
✔	3J9i	5623	2022-07-07	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.67	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.007	0.89	0.0	0.05	17.62	0.00	2.132	14.08	1.20	3.3	96.4	0.3	0.06	0.84	0.87	0.89	2.61	46228	5978	28	0	0	0	0	logfile
✔	3J9J	5778	2022-07-04	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	3J9K	2870	2022-07-05	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.65	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.78	0.0	0.04	13.93	0.00	2.137	16.74	0.00	5.1	94.8	0.2	-1.17	1.16	0.70	0.70	—	126512	10352	48	0	8304	0	0	logfile
✔	3J9L	2871	2022-07-03	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.044	3.04	47.0	0.12	19.31	0.02	1.806	99.15	3.02	41.1	57.3	1.6	-7.66	2.86	0.73	0.82	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9M	2876	2022-07-11	2015-02-08	3.5	3.59	3.50	3.5	0.007	1.35	38.0	0.09	19.29	0.01	1.242	5.74	9.06	8.2	89.4	2.4	-1.72	0.66	0.76	1.82	3.5	0.008	0.84	2.0	0.04	18.35	0.01	1.613	14.70	0.27	6.8	92.6	0.6	-0.01	0.86	0.76	0.83	1.57	158384	12902	97	2454	309	0	0	logfile

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