The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J80 | 2764 | 2022-12-15 | 2014-08-28 | 3.75 | 3.87 | 3.84 | 3.8 | 0.007 | 1.36 | 43.0 | 0.11 | 22.30 | 0.01 | 1.747 | 9.38 | 13.53 | 12.2 | 83.2 | 4.6 | -2.33 | 0.79 | 0.86 | 0.90 | 3.7 | 0.007 | 0.90 | 0.0 | 0.04 | 20.59 | 0.01 | 1.697 | 26.67 | 1.57 | 12.1 | 86.4 | 1.4 | -1.94 | 1.63 | 0.78 | 0.82 | 0.70 | 77716 | 5039 | 41 | 1779 | 70 | 0 | 0 | logfile |
✔ | 3J81 | 2763 | 2022-12-16 | 2014-08-29 | 4.0 | 4.19 | — | 4.0 | 0.007 | 1.30 | 64.0 | 0.10 | 22.05 | 0.01 | 1.076 | 7.78 | 12.47 | 11.6 | 83.5 | 4.9 | -2.31 | 0.79 | 0.84 | — | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 20.74 | 0.01 | 1.831 | 23.36 | 0.71 | 11.2 | 87.4 | 1.4 | -1.88 | 2.09 | 0.79 | 0.82 | — | 83760 | 5686 | 48 | 1876 | 84 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2022-12-12 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.004 | 0.56 | 0.0 | 0.03 | 20.77 | 0.01 | 2.082 | 10.42 | 2.01 | 1.4 | 98.6 | 0.0 | 2.48 | 1.98 | 0.81 | 0.79 | 0.26 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 3J8A | 6124 | 2022-12-13 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.27 | 0.0 | 0.05 | 14.88 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 16.43 | 0.00 | 1.925 | 14.95 | 1.23 | 6.4 | 92.8 | 0.8 | -2.24 | 1.24 | 0.72 | 0.83 | 1.55 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✘ | 3J8i | 6179 | 2022-12-18 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.34 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2022-12-14 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.96 | 0.0 | 0.07 | 15.84 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.004 | 0.80 | 0.0 | 0.04 | 13.91 | 0.01 | 1.597 | 17.25 | 0.00 | 5.1 | 94.4 | 0.6 | 0.53 | 2.61 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2022-12-15 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 0.248 | 26.65 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.69 | 0.79 | 2.57 | 3.0 | 0.006 | 0.91 | 3.0 | 0.05 | 16.54 | 0.01 | 1.702 | 20.56 | 3.00 | 4.6 | 95.3 | 0.1 | 0.04 | 0.99 | 0.72 | 0.84 | 2.98 | 26624 | 3384 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2022-12-11 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.82 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.87 | 0.0 | 0.05 | 17.66 | 0.00 | 2.179 | 16.10 | 0.45 | 8.5 | 90.8 | 0.7 | -1.64 | 1.60 | 0.75 | 0.85 | 3.08 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2022-12-11 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 21.30 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.86 | 0.0 | 0.04 | 17.74 | 0.00 | 2.228 | 10.46 | 0.46 | 7.4 | 91.7 | 1.0 | 0.84 | 1.22 | 0.74 | 0.86 | 3.56 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9i | 5623 | 2022-12-21 | 2015-02-02 | 3.3 | 3.34 | 2.96 | 3.2 | 0.034 | 3.61 | 574.0 | 0.23 | 18.10 | 0.03 | 1.922 | 5.67 | 9.27 | 8.0 | 90.1 | 1.9 | -3.61 | 0.80 | 0.79 | 3.08 | 3.2 | 0.005 | 0.82 | 0.0 | 0.05 | 17.64 | 0.00 | 2.147 | 13.66 | 0.78 | 3.3 | 96.4 | 0.3 | 0.26 | 0.85 | 0.87 | 0.89 | 2.53 | 46228 | 5978 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2022-12-14 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.80 | 0.00 | 1.905 | 14.19 | 0.17 | 6.7 | 92.7 | 0.6 | 2.30 | 3.87 | 0.59 | 0.76 | 1.97 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9P | 6267 | 2022-12-13 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.59 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-12-19 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2022-12-19 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 15.72 | 0.00 | 2.013 | 15.42 | 0.65 | 10.0 | 89.0 | 1.0 | -2.00 | 1.33 | 0.63 | 0.83 | 1.97 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-12-13 | 2015-02-19 | 2.6 | 3.84 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.104 | 287.40 | 6.86 | 1.3 | 98.0 | 0.8 | 1.95 | 0.60 | 0.63 | 2.26 | 3.6 | 0.032 | 2.66 | 41.0 | 0.17 | 20.84 | 0.02 | 1.083 | 172.48 | 7.64 | 19.4 | 79.1 | 1.5 | -3.76 | 4.12 | 0.56 | 0.66 | 1.10 | 13084 | 1588 | 4 | 0 | 20 | 420 | 0 | logfile |
✔ | 3J9X | 6310 | 2022-12-14 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 13.09 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.47 | 3.8 | 0.005 | 0.76 | 0.0 | 0.04 | 16.22 | 0.01 | 2.070 | 21.17 | 0.53 | 2.4 | 97.6 | 0.0 | 1.81 | 1.19 | 0.63 | 0.79 | 2.10 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✔ | 3JA7 | 6324 | 2022-12-21 | 2015-04-21 | 3.6 | 3.71 | — | 3.7 | 0.010 | 1.53 | 0.0 | 0.06 | 15.94 | 0.01 | 1.528 | 38.36 | 10.44 | 11.0 | 86.8 | 2.1 | -4.92 | 0.77 | 0.82 | 1.86 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 16.12 | 0.00 | 2.244 | 10.58 | 0.16 | 5.7 | 93.6 | 0.7 | -1.28 | 1.71 | 0.77 | 0.81 | 1.48 | 41280 | 5136 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JA8 | 6338 | 2022-12-18 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.56 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.26 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2022-12-13 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.91 | 0.01 | 1.933 | 77.25 | 0.00 | 27.5 | 71.1 | 1.4 | -5.52 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2022-12-12 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 8.46 | 0.00 | 2.250 | 17.07 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.004 | 0.80 | 0.0 | 0.04 | 12.88 | 0.00 | 2.172 | 19.50 | 0.26 | 5.1 | 94.9 | 0.0 | -0.14 | 1.24 | 0.70 | 0.78 | 0.46 | 12705 | 1685 | 15 | 0 | 15 | 0 | 0 | logfile |