Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DSo	8910	2021-10-03	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.010	0.85	0.0	0.05	15.85	0.00	2.179	10.78	1.04	10.9	89.1	0.0	-4.57	1.56	0.51	0.83	5.18	6588	828	12	0	0	0	0	logfile
✘	5GAQ	8015	2021-10-05	2016-01-05	3.1	3.36	—	3.2	0.006	1.01	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20574	2592	9	0	0	0	0	logfile
✔	5M5W	3446	2021-10-06	2016-10-23	3.8	3.89	—	3.9	0.003	0.62	4.0	0.05	12.18	0.00	1.405	11.70	1.35	4.3	95.6	0.1	-4.15	0.68	0.68	1.44	3.8	0.005	0.78	0.0	0.04	16.07	0.01	2.142	13.65	0.48	6.3	93.7	0.0	-1.26	0.84	0.77	0.78	1.31	34780	4271	21	43	7	0	0	logfile
✔	5Yi5	6830	2021-10-06	2017-10-02	3.0	4.31	—	4.3	0.007	0.68	0.0	0.04	10.51	0.00	2.314	3.34	0.00	3.5	96.5	0.0	-4.00	0.77	0.80	2.08	4.2	0.006	0.87	0.0	0.04	19.20	0.00	2.091	13.00	4.30	4.3	95.7	0.0	2.47	1.08	0.72	0.78	1.02	33816	4128	24	0	0	0	0	logfile
✔	5G2X	3331	2021-10-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.00	0.0	0.05	20.64	0.01	1.926	44.26	1.13	23.3	75.6	1.1	-5.27	2.46	0.80	0.67	0.38	19072	487	3	704	0	0	0	logfile
✔	6AYF	7019	2021-10-04	2017-09-08	3.62	3.73	—	3.7	0.004	0.82	0.0	0.05	15.55	0.00	2.213	17.75	0.11	6.8	93.0	0.2	-4.47	0.70	0.84	1.52	3.7	0.003	0.65	0.0	0.04	17.18	0.00	2.185	10.08	0.63	2.6	97.4	0.0	1.20	0.89	0.69	0.81	1.04	15780	1904	8	0	8	0	0	logfile
✔	6P5A	20254	2021-10-03	2019-05-30	3.6	3.77	3.56	3.7	0.003	0.53	0.0	0.04	20.09	0.00	1.890	4.46	0.00	2.0	98.0	0.0	-1.69	0.75	0.80	2.47	3.7	0.003	0.57	0.0	0.04	21.77	0.00	1.971	6.41	0.10	3.5	96.5	0.0	1.34	0.61	0.76	0.81	2.40	11948	1120	12	136	6	0	0	logfile
✔	6NM9	9398	2021-10-05	2019-01-10	3.38	3.86	—	3.8	0.008	0.77	3.0	0.05	15.44	0.00	1.884	18.46	0.29	12.6	87.3	0.1	-4.62	0.72	0.76	1.93	3.8	0.004	0.71	0.0	0.04	17.52	0.00	2.040	14.50	0.42	8.7	91.3	0.0	-1.34	1.63	0.78	0.82	1.79	22916	2640	10	50	4	0	0	logfile
✔	6oG3	20051	2021-10-03	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.91	0.0	0.00	7.17	0.00	2.622	30.38	0.00	6.5	93.5	0.0	-0.51	2.18	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	5W7V	8781	2021-10-04	2017-06-20	3.8	3.42	—	3.5	0.007	0.77	0.0	0.06	12.79	0.00	2.365	17.14	0.00	1.4	98.6	0.0	-2.52	0.47	0.74	3.24	3.4	0.003	0.74	0.0	0.06	15.60	0.00	2.302	7.91	1.62	1.5	98.5	0.0	-0.37	1.28	0.53	0.78	3.39	20430	2640	270	0	0	0	0	logfile
✔	5M5Y	3448	2021-10-06	2016-10-23	4.0	4.14	—	4.1	0.003	0.69	3.0	0.05	12.64	0.00	1.385	12.73	1.65	5.5	94.3	0.2	-4.51	0.74	0.68	—	4.1	0.010	1.07	2.0	0.05	16.56	0.01	1.912	25.35	0.30	9.6	90.3	0.1	-2.49	1.61	0.78	0.74	—	34104	4161	22	51	6	0	0	logfile
✔	5M64	3449	2021-10-06	2016-10-24	4.6	4.57	—	4.5	0.003	0.69	2.0	0.05	12.90	0.00	1.067	12.92	2.03	4.9	95.0	0.1	-4.55	0.71	0.64	—	4.5	0.004	0.87	0.0	0.05	14.62	0.01	2.026	21.80	0.00	8.7	91.3	0.0	-2.37	1.12	0.77	0.74	—	35876	4383	22	51	6	0	0	logfile
✔	5G2Y	3332	2021-10-04	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.93	0.01	1.976	72.56	0.00	0.0	0.0	0.0	—	3.28	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✔	6DKF	7952	2021-10-04	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.6	0.004	0.73	0.0	0.04	16.21	0.00	2.126	12.20	0.77	2.3	97.7	0.0	0.16	1.79	0.73	0.78	1.82	17060	2314	14	0	0	0	0	logfile
✔	5LEG	4042	2021-10-07	2016-06-29	3.6	3.32	—	3.8	0.012	1.91	0.0	0.05	18.58	0.00	2.383	42.96	0.00	8.2	91.8	0.0	-5.72	0.71	0.75	3.43	3.3	0.003	0.73	0.0	0.04	16.40	0.00	2.144	10.29	0.46	4.4	95.6	0.0	-0.99	1.57	0.71	0.83	1.84	41355	5040	155	0	75	0	0	logfile
✔	5Z3o	6880	2021-10-04	2018-01-08	3.62	3.82	—	3.6	0.003	0.63	0.0	0.04	24.28	0.00	2.055	14.50	0.44	9.3	90.7	0.1	-3.57	0.88	0.81	1.22	3.6	0.004	0.73	0.0	0.04	26.46	0.00	2.031	14.12	0.09	5.1	94.8	0.1	-0.01	2.11	0.88	0.83	0.77	16802	1346	11	292	2	0	0	logfile
✔	5T4D	8354	2021-10-04	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.79	0.0	0.05	8.89	0.00	2.120	12.20	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	3.1	0.003	0.59	0.0	0.04	15.64	0.00	2.250	7.49	2.18	3.3	96.7	0.0	1.59	1.40	0.79	0.86	2.87	14876	1852	8	0	12	0	0	logfile
✔	6V5V	21054	2021-10-03	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	5.90	0.00	4.6	95.4	0.0	-2.04	0.52	0.82	2.06	3.9	0.002	0.53	0.0	0.04	14.68	0.00	2.260	6.91	0.30	3.2	96.8	0.0	0.96	0.58	0.52	0.82	1.59	2979	369	1	1	0	0	0	logfile
✔	6N7T	0363	2021-10-04	2018-11-28	3.9	4.01	—	3.9	0.006	0.95	0.0	0.06	15.07	0.00	1.883	3.57	0.81	5.6	94.3	0.1	-3.82	0.76	0.72	1.04	3.9	0.009	1.02	0.0	0.04	17.22	0.01	1.876	14.65	0.30	7.3	92.7	0.0	-1.61	0.83	0.78	0.76	0.86	12890	1610	12	16	10	0	0	logfile
✔	6V6C	21068	2021-10-03	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	6.97	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.65	0.0	0.04	14.12	0.00	2.151	5.73	0.23	4.2	95.8	0.0	0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile

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