Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iP1	9697	2022-05-13	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.40	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	6EoJ	3908	2022-05-13	2017-10-09	3.55	3.58	3.51	3.6	0.007	1.33	7.0	0.09	16.65	0.00	2.526	9.99	4.80	10.1	88.2	1.7	-3.75	0.59	0.78	2.60	3.6	0.005	0.84	0.0	0.05	17.60	0.01	2.089	23.05	0.52	7.3	92.6	0.1	-2.45	1.58	0.65	0.78	2.27	13688	1710	4	0	7	0	0	logfile
✔	6S5T	10100	2022-05-12	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.31	0.00	2.450	5.23	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.006	0.77	0.0	0.05	15.14	0.00	2.199	11.19	0.00	6.1	93.9	0.0	-0.57	1.49	0.76	0.82	—	6958	896	3	0	1	0	0	logfile
✔	6UES	20755	2022-05-12	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6D6Q	7808	2022-05-16	2018-04-22	3.45	3.57	—	3.5	0.006	0.74	0.0	0.05	10.12	0.00	1.778	9.91	0.06	9.9	90.1	0.0	-4.46	0.79	0.77	2.28	3.5	0.009	0.93	1.0	0.04	14.96	0.01	1.768	14.60	0.09	4.9	95.1	0.0	-1.09	0.83	0.81	0.82	1.71	31639	3889	17	61	3	0	0	logfile
✔	6G51	4350	2022-05-18	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.004	0.75	0.0	0.04	21.98	0.00	1.945	9.45	0.00	12.1	87.8	0.1	-1.57	1.59	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	5XY3	6784	2022-05-12	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.27	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.006	0.82	3.0	0.04	16.73	0.01	1.747	9.56	0.22	6.0	93.5	0.4	-1.48	0.60	0.78	0.85	2.25	107145	5917	43	2815	0	0	0	logfile
✔	6PPF	20435	2022-05-15	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	19.21	0.00	1.152	15.01	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.005	0.73	0.0	0.04	18.68	0.01	1.988	11.83	0.75	9.0	90.8	0.1	-2.78	0.64	0.81	0.82	1.63	71835	2101	22	2583	0	13	0	logfile
✔	5MBV	3460	2022-05-15	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.15	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.008	0.95	1.0	0.04	13.34	0.00	2.107	13.69	0.16	4.0	96.0	0.0	1.06	0.86	0.88	0.83	1.51	24118	3014	5	0	0	0	0	logfile
✔	6PP6	20420	2022-05-16	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.57	0.0	0.04	12.51	0.00	1.914	11.94	0.06	4.0	96.0	0.0	-0.92	1.51	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	6NAV	0397	2022-05-14	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✘	6RKV	4912	2022-05-13	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	5FLX	3221	2022-05-15	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	13.54	0.00	0.894	15.97	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.004	0.77	0.0	0.04	16.83	0.01	1.899	21.83	0.99	8.4	91.1	0.5	-1.62	1.51	0.47	0.80	0.57	80592	4810	40	1972	76	0	0	logfile
✔	6P4G	20248	2022-05-15	2019-05-27	3.1	3.17	3.35	3.1	0.010	1.45	4.0	0.10	17.35	0.00	2.232	2.68	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.006	0.78	2.0	0.04	17.63	0.01	2.032	13.69	0.26	5.0	94.9	0.1	-1.03	1.38	0.75	0.79	1.66	79374	4862	36	1900	0	0	0	logfile
✔	6E9Y	9020	2022-05-12	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6XYP	10651	2022-05-12	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.85	5.05	4955	725	10	0	0	0	0	logfile
✔	6J2Q	9771	2022-05-12	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.66	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.80	0.0	0.04	15.39	0.00	2.012	16.29	0.52	3.9	95.9	0.1	-0.67	2.27	0.82	0.76	1.04	106311	13518	47	0	0	0	0	logfile
✔	6MHQ	9116	2022-05-16	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.73	0.85	2.42	32640	2124	12	0	0	0	15264	logfile
✔	6KFF	9971	2022-05-14	2019-07-07	3.8	3.93	—	3.9	0.004	0.60	0.0	0.04	15.08	0.00	2.182	8.35	0.35	9.2	90.8	0.0	-2.57	0.67	0.82	1.08	3.9	0.006	0.88	0.0	0.04	17.34	0.00	1.744	12.22	0.27	8.4	91.6	0.0	0.05	0.58	0.64	0.82	1.11	21192	2576	8	0	0	0	0	logfile
✔	6KFG	9972	2022-05-14	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.007	1.06	0.0	0.05	16.70	0.00	2.154	13.24	0.84	8.9	91.1	0.0	-0.54	1.36	0.62	0.81	1.33	22264	2704	8	0	0	0	0	logfile

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