Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5JXL	8179	2022-07-04	2016-05-13	3.5	3.48	—	3.6	0.008	1.38	0.0	0.06	9.65	0.00	1.795	18.18	0.15	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.005	0.87	0.0	0.05	15.93	0.01	2.104	13.41	0.83	8.0	91.6	0.4	-1.86	1.53	0.30	0.83	2.04	69993	9361	11	0	0	0	0	logfile
✘	4CE4	2490	2022-07-04	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.86	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✘	6Y1Z	10673	2022-07-04	2020-02-14	2.82	3.48	—	3.3	0.002	0.47	0.0	0.04	13.28	0.00	1.216	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16610	1930	10	0	35	0	0	logfile
✘	6TY9	20582	2022-07-04	2019-08-08	2.9	2.98	—	2.9	0.007	0.66	0.0	0.04	14.55	0.00	1.184	5.95	0.20	3.6	96.4	0.0	-4.19	0.60	0.88	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14559	1709	6	38	5	0	0	logfile
✔	5U76	8517	2022-07-06	2016-12-11	3.76	4.46	—	4.4	0.007	1.04	0.0	0.06	13.03	0.00	1.410	5.10	0.51	8.4	91.3	0.2	-3.69	0.56	0.58	0.90	4.3	0.005	0.89	0.0	0.05	16.04	0.01	2.126	22.87	0.61	5.7	94.3	0.0	-0.48	2.52	0.64	0.77	0.97	28364	3512	4	0	0	0	0	logfile
✔	6VAM	21143	2022-07-03	2019-12-17	3.63	4.11	—	4.0	0.005	0.84	0.0	0.04	14.63	0.00	2.290	9.78	0.00	7.3	92.7	0.0	-1.89	0.65	0.76	2.23	4.0	0.004	0.70	0.0	0.04	16.27	0.00	2.355	7.10	0.21	7.0	93.0	0.0	2.11	1.15	0.65	0.79	2.17	13360	1712	8	0	0	0	0	logfile
✔	6VAL	21142	2022-07-05	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.96	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.70	0.0	0.04	16.74	0.00	2.129	7.64	0.97	2.8	97.2	0.0	1.31	2.44	0.68	0.79	1.61	21615	2827	11	0	0	0	0	logfile
✔	5U1D	8482	2022-07-03	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.78	0.0	0.04	15.92	0.00	1.985	14.80	0.51	4.8	95.1	0.1	0.73	1.31	0.52	0.75	1.33	7815	1168	3	0	0	0	0	logfile
✔	3JD0	6631	2022-07-05	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.63	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.003	0.69	0.0	0.04	14.32	0.00	2.131	13.81	0.12	4.7	95.2	0.1	0.79	2.53	0.85	0.86	2.00	23478	2976	12	0	6	0	0	logfile
✔	6MHo	9115	2022-07-06	2018-09-18	3.4	3.50	3.44	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.96	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.54	0.0	0.03	12.69	0.00	1.993	6.32	0.43	4.3	95.7	0.0	1.04	2.45	0.69	0.81	3.77	32224	2404	4	0	0	0	15184	logfile
✔	6PPE	20434	2022-07-07	2019-07-06	3.19	3.60	—	3.5	0.006	0.67	0.0	0.04	9.86	0.00	2.365	0.73	0.00	1.5	98.5	0.0	-2.78	0.84	0.90	4.24	3.5	0.004	0.56	0.0	0.04	14.62	0.00	1.907	5.60	0.04	2.6	97.4	0.0	1.74	1.26	0.77	0.85	3.65	43736	2814	42	0	0	14	21896	logfile
✔	6PWP	20510	2022-07-04	2019-07-23	4.1	6.04	4.26	4.4	0.010	0.86	0.0	0.05	13.54	0.00	2.096	24.59	0.31	6.8	93.2	0.0	-3.74	0.80	0.87	—	4.4	0.005	0.70	0.0	0.04	13.62	0.00	2.059	18.51	0.00	4.6	95.4	0.0	0.06	1.65	0.80	0.86	—	14903	1960	7	0	0	0	0	logfile
✔	5X6o	6708	2022-07-04	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.14	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.009	1.01	1.0	0.04	14.78	0.00	2.185	10.83	0.29	8.2	90.4	1.3	-0.84	0.80	0.61	0.76	0.82	19309	2701	2	0	0	0	0	logfile
✔	6PWN	20508	2022-07-04	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.34	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.270	6.93	0.13	3.2	96.8	0.0	1.47	1.21	0.81	0.85	1.95	15379	1960	14	0	14	0	0	logfile
✘	6U1N	20612	2022-07-03	2019-08-16	4.0	4.36	—	4.0	0.007	0.77	0.0	0.04	11.37	0.00	1.188	18.08	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5863	864	5	0	1	0	0	logfile
✔	6V9Z	21132	2022-07-03	2019-12-16	3.35	4.22	3.56	3.9	0.014	1.88	0.0	0.09	14.27	0.00	2.382	3.65	2.97	5.1	94.9	0.0	-2.85	0.74	0.80	1.47	3.9	0.003	0.59	0.0	0.04	15.49	0.00	2.235	6.88	0.16	2.9	97.1	0.0	2.23	1.67	0.77	0.86	1.48	11434	1472	4	0	0	0	0	logfile
✔	6KLL	0711	2022-07-03	2019-07-30	3.0	3.78	—	3.3	0.007	0.77	0.0	0.05	15.54	0.00	1.944	7.72	7.64	5.4	94.6	0.0	-3.74	0.68	0.87	3.00	3.3	0.003	0.60	0.0	0.04	15.76	0.00	1.935	6.82	2.23	3.7	96.3	0.0	-0.23	1.17	0.67	0.89	2.50	11748	1488	8	0	8	0	0	logfile
✔	6KLN	0712	2022-07-03	2019-07-30	3.4	4.21	—	3.7	0.009	0.85	0.0	0.05	16.30	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.7	0.003	0.64	0.0	0.04	15.02	0.00	1.934	8.88	0.16	3.7	96.3	0.0	-0.33	0.58	0.71	0.89	1.91	11748	1488	8	0	8	0	0	logfile
✔	6oT5	20194	2022-07-06	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.86	0.0	0.05	10.12	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.003	0.55	0.0	0.03	13.40	0.00	1.949	6.19	0.00	5.6	94.4	0.0	0.49	0.83	0.68	0.79	2.80	33420	2444	8	0	52	0	15620	logfile
✔	6PQU	20453	2022-07-03	2019-07-10	3.3	3.76	—	3.7	0.008	0.90	2.0	0.05	23.35	0.00	1.970	23.49	1.21	2.4	97.4	0.2	-4.67	0.69	0.72	1.88	3.7	0.003	0.64	0.0	0.04	23.35	0.00	1.976	12.83	0.24	6.4	93.4	0.2	-0.65	1.18	0.66	0.70	1.44	10004	936	10	124	6	0	0	logfile

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