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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6iP1 | 9697 | 2022-05-13 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 8.09 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.95 | 0.0 | 0.04 | 18.38 | 0.00 | 2.200 | 16.40 | 1.02 | 7.3 | 92.7 | 0.0 | -0.36 | 1.25 | 0.60 | 0.75 | -0.05 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EoJ | 3908 | 2022-05-13 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.99 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | 3.6 | 0.005 | 0.84 | 0.0 | 0.05 | 17.60 | 0.01 | 2.089 | 23.05 | 0.52 | 7.3 | 92.6 | 0.1 | -2.45 | 1.58 | 0.65 | 0.78 | 2.27 | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 6S5T | 10100 | 2022-05-12 | 2019-07-02 | 4.15 | 4.28 | 4.17 | 4.2 | 0.007 | 1.48 | 3.0 | 0.09 | 17.31 | 0.00 | 2.450 | 5.23 | 3.93 | 7.1 | 92.4 | 0.6 | -4.05 | 0.75 | 0.84 | — | 4.2 | 0.006 | 0.77 | 0.0 | 0.05 | 15.14 | 0.00 | 2.199 | 11.19 | 0.00 | 6.1 | 93.9 | 0.0 | -0.57 | 1.49 | 0.76 | 0.82 | — | 6958 | 896 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-05-12 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6D6Q | 7808 | 2022-05-16 | 2018-04-22 | 3.45 | 3.57 | — | 3.5 | 0.006 | 0.74 | 0.0 | 0.05 | 10.12 | 0.00 | 1.778 | 9.91 | 0.06 | 9.9 | 90.1 | 0.0 | -4.46 | 0.79 | 0.77 | 2.28 | 3.5 | 0.009 | 0.93 | 1.0 | 0.04 | 14.96 | 0.01 | 1.768 | 14.60 | 0.09 | 4.9 | 95.1 | 0.0 | -1.09 | 0.83 | 0.81 | 0.82 | 1.71 | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✔ | 6G51 | 4350 | 2022-05-18 | 2018-03-28 | 4.1 | 4.42 | — | 4.0 | 0.007 | 1.44 | 22.0 | 0.10 | 21.21 | 0.00 | 0.264 | 3.79 | 0.00 | 7.0 | 92.3 | 0.8 | -2.90 | 0.71 | 0.63 | — | 3.9 | 0.004 | 0.75 | 0.0 | 0.04 | 21.98 | 0.00 | 1.945 | 9.45 | 0.00 | 12.1 | 87.8 | 0.1 | -1.57 | 1.59 | 0.81 | 0.69 | — | 50662 | 6237 | 38 | 1659 | 0 | 0 | 0 | logfile |
✔ | 5XY3 | 6784 | 2022-05-12 | 2017-07-06 | 3.2 | 3.24 | — | 3.2 | 0.006 | 1.04 | 7.0 | 0.09 | 17.01 | 0.00 | 1.123 | 6.27 | 3.45 | 6.0 | 92.7 | 1.3 | -3.33 | 0.61 | 0.76 | 2.54 | 3.2 | 0.006 | 0.82 | 3.0 | 0.04 | 16.73 | 0.01 | 1.747 | 9.56 | 0.22 | 6.0 | 93.5 | 0.4 | -1.48 | 0.60 | 0.78 | 0.85 | 2.25 | 107145 | 5917 | 43 | 2815 | 0 | 0 | 0 | logfile |
✔ | 6PPF | 20435 | 2022-05-15 | 2019-07-06 | 3.4 | 3.48 | — | 3.4 | 0.006 | 0.88 | 13.0 | 0.05 | 19.21 | 0.00 | 1.152 | 15.01 | 7.36 | 9.0 | 90.1 | 0.9 | -4.80 | 0.73 | 0.73 | 1.38 | 3.4 | 0.005 | 0.73 | 0.0 | 0.04 | 18.68 | 0.01 | 1.988 | 11.83 | 0.75 | 9.0 | 90.8 | 0.1 | -2.78 | 0.64 | 0.81 | 0.82 | 1.63 | 71835 | 2101 | 22 | 2583 | 0 | 13 | 0 | logfile |
✔ | 5MBV | 3460 | 2022-05-15 | 2016-11-08 | 3.8 | 4.14 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 10.21 | 0.00 | 2.172 | 7.15 | 0.74 | 4.7 | 95.2 | 0.1 | -3.37 | 0.87 | 0.81 | 0.98 | 3.8 | 0.008 | 0.95 | 1.0 | 0.04 | 13.34 | 0.00 | 2.107 | 13.69 | 0.16 | 4.0 | 96.0 | 0.0 | 1.06 | 0.86 | 0.88 | 0.83 | 1.51 | 24118 | 3014 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PP6 | 20420 | 2022-05-16 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 11.88 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | 4.3 | 0.003 | 0.57 | 0.0 | 0.04 | 12.51 | 0.00 | 1.914 | 11.94 | 0.06 | 4.0 | 96.0 | 0.0 | -0.92 | 1.51 | 0.81 | 0.81 | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✔ | 6NAV | 0397 | 2022-05-14 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 11.67 | 0.00 | 2.145 | 7.83 | 0.00 | 6.1 | 93.9 | 0.0 | -0.50 | 1.54 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-05-13 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 5FLX | 3221 | 2022-05-15 | 2015-10-28 | 3.9 | 4.33 | — | 4.3 | 0.003 | 0.71 | 3.0 | 0.05 | 13.54 | 0.00 | 0.894 | 15.97 | 0.19 | 6.8 | 92.6 | 0.6 | -2.97 | 0.42 | 0.58 | 0.37 | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.83 | 0.01 | 1.899 | 21.83 | 0.99 | 8.4 | 91.1 | 0.5 | -1.62 | 1.51 | 0.47 | 0.80 | 0.57 | 80592 | 4810 | 40 | 1972 | 76 | 0 | 0 | logfile |
✔ | 6P4G | 20248 | 2022-05-15 | 2019-05-27 | 3.1 | 3.17 | 3.35 | 3.1 | 0.010 | 1.45 | 4.0 | 0.10 | 17.35 | 0.00 | 2.232 | 2.68 | 3.36 | 8.9 | 90.2 | 0.9 | -4.06 | 0.67 | 0.74 | 2.52 | 3.1 | 0.006 | 0.78 | 2.0 | 0.04 | 17.63 | 0.01 | 2.032 | 13.69 | 0.26 | 5.0 | 94.9 | 0.1 | -1.03 | 1.38 | 0.75 | 0.79 | 1.66 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2022-05-12 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.003 | 0.53 | 0.0 | 0.03 | 11.06 | 0.00 | 2.036 | 9.37 | 0.00 | 1.4 | 98.6 | 0.0 | 2.12 | 1.50 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6XYP | 10651 | 2022-05-12 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.85 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2022-05-12 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.66 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 15.39 | 0.00 | 2.012 | 16.29 | 0.52 | 3.9 | 95.9 | 0.1 | -0.67 | 2.27 | 0.82 | 0.76 | 1.04 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHQ | 9116 | 2022-05-16 | 2018-09-18 | 3.4 | 3.50 | — | 3.5 | 0.018 | 0.80 | 0.0 | 0.08 | 12.18 | 0.00 | 2.210 | 6.75 | 3.14 | 5.8 | 94.2 | 0.0 | -1.67 | 0.73 | 0.83 | 2.60 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 15.39 | 0.00 | 2.088 | 11.34 | 0.84 | 5.0 | 95.0 | 0.0 | 2.21 | 1.06 | 0.73 | 0.85 | 2.42 | 32640 | 2124 | 12 | 0 | 0 | 0 | 15264 | logfile |
✔ | 6KFF | 9971 | 2022-05-14 | 2019-07-07 | 3.8 | 3.93 | — | 3.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.08 | 0.00 | 2.182 | 8.35 | 0.35 | 9.2 | 90.8 | 0.0 | -2.57 | 0.67 | 0.82 | 1.08 | 3.9 | 0.006 | 0.88 | 0.0 | 0.04 | 17.34 | 0.00 | 1.744 | 12.22 | 0.27 | 8.4 | 91.6 | 0.0 | 0.05 | 0.58 | 0.64 | 0.82 | 1.11 | 21192 | 2576 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFG | 9972 | 2022-05-14 | 2019-07-07 | 3.8 | 3.91 | — | 3.9 | 0.007 | 0.77 | 0.0 | 0.05 | 14.04 | 0.00 | 2.148 | 13.10 | 0.67 | 11.5 | 88.5 | 0.0 | -4.38 | 0.63 | 0.82 | 1.64 | 3.9 | 0.007 | 1.06 | 0.0 | 0.05 | 16.70 | 0.00 | 2.154 | 13.24 | 0.84 | 8.9 | 91.1 | 0.0 | -0.54 | 1.36 | 0.62 | 0.81 | 1.33 | 22264 | 2704 | 8 | 0 | 0 | 0 | 0 | logfile |