Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U5i	26351	2023-04-26	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.72	0.0	0.05	16.39	0.00	2.159	15.05	0.16	2.1	97.9	0.0	-0.02	0.67	0.67	0.78	1.94	23539	2904	16	0	0	123	0	logfile
✔	6UVA	20906	2023-04-21	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✘	5GW5	9541	2023-04-22	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7XDD	33144	2023-04-21	2022-03-26	2.93	2.56	2.92	3.0	0.005	0.72	0.0	0.05	14.36	0.00	2.204	6.52	2.03	2.4	97.6	0.0	0.32	0.79	0.85	3.21	3.0	0.003	0.60	0.0	0.04	16.22	0.00	2.100	7.14	1.93	2.1	97.9	0.0	1.85	0.47	0.80	0.87	2.70	9021	1123	2	0	0	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	7WJN	32546	2023-04-22	2022-01-07	3.3	3.46	—	3.4	0.004	0.59	0.0	0.04	10.18	0.00	2.235	2.90	0.58	4.1	95.9	0.0	2.06	0.67	0.82	2.37	3.4	0.004	0.56	0.0	0.04	13.94	0.00	2.231	5.48	0.29	5.4	94.6	0.0	2.02	1.17	0.68	0.85	1.83	13054	1616	4	0	4	0	0	logfile
✔	7ABR	11707	2023-04-28	2020-09-08	3.7	3.80	—	3.7	0.011	1.09	0.0	0.05	14.93	0.00	2.066	19.60	0.51	9.6	90.1	0.2	-3.56	0.86	0.83	1.86	3.7	0.003	0.68	0.0	0.04	16.46	0.00	2.104	14.20	0.24	7.0	93.0	0.0	0.10	0.65	0.85	0.82	1.17	27209	3419	13	0	37	0	0	logfile
✔	7SiL	25143	2023-04-22	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.66	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.58	0.0	0.04	16.10	0.00	2.167	8.36	1.77	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.87	12924	1564	8	0	34	0	0	logfile
✔	7WJo	32547	2023-04-22	2022-01-07	3.2	3.40	—	3.3	0.010	0.50	0.0	0.04	10.50	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.003	0.56	0.0	0.04	14.49	0.00	2.235	5.93	0.15	5.0	95.0	0.0	1.36	0.53	0.68	0.85	1.72	12932	1602	4	0	2	0	0	logfile
✔	7B5R	12048	2023-04-22	2020-12-07	3.8	4.08	3.77	3.9	0.006	0.81	0.0	0.05	14.43	0.00	2.001	16.73	0.00	9.3	90.7	0.0	-1.41	0.85	0.81	1.55	3.9	0.003	0.64	0.0	0.04	16.00	0.00	2.185	12.98	0.39	6.3	93.7	0.0	-0.32	1.20	0.85	0.81	1.31	11606	1430	7	0	0	0	0	logfile
✔	7S1M	24805	2023-04-21	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.54	0.0	0.04	15.96	0.00	2.152	5.62	1.36	1.8	98.2	0.0	1.68	0.92	0.77	0.87	3.72	9160	1168	6	0	1	0	0	logfile
✔	7V21	31633	2023-04-22	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.143	5.68	0.16	2.3	97.7	0.0	1.49	0.44	0.73	0.88	3.08	11903	1505	4	0	0	0	0	logfile
✔	7NJP	12402	2023-04-27	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.36	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.003	0.51	0.0	0.04	15.56	0.00	1.765	7.05	0.34	2.5	97.4	0.0	1.72	0.91	0.86	0.88	3.33	74554	4929	31	0	11	16	37305	logfile
✔	5YWD	6853	2023-04-21	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.76	0.0	0.04	13.58	0.00	1.928	14.00	0.00	4.0	96.0	0.0	1.14	1.51	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	7WJM	32545	2023-04-22	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.53	0.0	0.04	14.04	0.00	2.249	4.73	0.07	4.2	95.7	0.1	2.19	3.23	0.71	0.86	1.94	12970	1614	2	0	0	0	0	logfile
✔	7E83	31009	2023-04-22	2021-02-28	3.1	3.20	2.96	3.3	0.003	0.61	0.0	0.04	15.41	0.00	2.153	7.05	0.00	9.0	90.7	0.3	-0.08	0.71	0.80	3.01	3.2	0.003	0.59	0.0	0.04	17.03	0.00	2.164	9.22	0.22	7.6	92.2	0.3	0.48	0.47	0.69	0.82	2.62	12704	1544	8	0	0	0	0	logfile
✔	6XGC	22180	2023-04-24	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7TYT	26194	2023-04-25	2022-02-14	3.6	3.74	—	3.7	0.004	0.55	0.0	0.04	15.52	0.00	2.202	8.38	1.67	3.6	96.4	0.0	0.83	0.58	0.78	1.34	3.7	0.006	0.65	0.0	0.05	16.64	0.00	2.049	10.89	1.00	6.5	93.5	0.0	0.34	0.31	0.58	0.79	1.22	20349	2759	11	0	22	0	0	logfile
✔	7A46	11629	2023-04-22	2020-08-19	3.0	3.95	2.87	3.7	0.007	0.61	0.0	0.04	12.01	0.00	2.225	4.56	5.95	2.4	97.6	0.0	-1.57	0.58	0.79	3.53	3.8	0.003	0.83	0.0	0.05	16.37	0.00	2.199	10.39	2.30	2.3	97.7	0.0	1.89	1.65	0.55	0.76	2.99	11501	1449	7	0	112	0	0	logfile

• ← previous
• Page 2 of 372
• next →