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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SKY | 10231 | 2022-12-14 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 16.48 | 0.00 | 2.102 | 5.19 | 2.81 | 2.1 | 97.9 | 0.0 | 1.58 | 2.20 | 0.73 | 0.85 | 2.38 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5YWC | 6852 | 2022-12-22 | 2017-11-29 | 4.3 | 4.48 | 4.24 | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 14.47 | 0.00 | 2.030 | 14.78 | 7.97 | 4.4 | 95.3 | 0.4 | -1.76 | 0.66 | 0.75 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 12.97 | 0.00 | 1.946 | 16.65 | 0.00 | 5.2 | 94.8 | 0.1 | 0.76 | 3.33 | 0.68 | 0.79 | — | 51108 | 6588 | 16 | 0 | 20 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 5MBV | 3460 | 2022-12-15 | 2016-11-08 | 3.8 | 4.14 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 10.21 | 0.00 | 2.172 | 7.15 | 0.74 | 4.7 | 95.2 | 0.1 | -3.37 | 0.87 | 0.81 | 0.98 | 3.8 | 0.004 | 0.73 | 0.0 | 0.04 | 13.53 | 0.00 | 2.112 | 12.67 | 0.16 | 4.2 | 95.8 | 0.1 | 1.02 | 0.91 | 0.88 | 0.83 | 1.40 | 24118 | 3014 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o84 | 0650 | 2022-12-11 | 2019-03-08 | 3.92 | 4.04 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.01 | 0.00 | 2.350 | 2.97 | 0.64 | 4.9 | 95.1 | 0.0 | -5.68 | 0.60 | 0.82 | 2.21 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.21 | 0.00 | 2.150 | 8.65 | 0.64 | 5.2 | 94.8 | 0.0 | 1.37 | 1.29 | 0.60 | 0.82 | 2.24 | 6224 | 712 | 2 | 0 | 118 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2022-12-11 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.84 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYQ | 10652 | 2022-12-11 | 2020-01-30 | 3.09 | 3.30 | 2.79 | 3.3 | 0.007 | 0.71 | 0.0 | 0.05 | 12.97 | 0.00 | 2.130 | 9.08 | 0.00 | 3.5 | 96.5 | 0.0 | -4.52 | 0.46 | 0.84 | 3.97 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 15.09 | 0.00 | 2.232 | 8.09 | 0.82 | 2.3 | 97.7 | 0.0 | -3.28 | 0.44 | 0.47 | 0.85 | 4.77 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFG | 9972 | 2022-12-14 | 2019-07-07 | 3.8 | 3.91 | — | 3.9 | 0.007 | 0.77 | 0.0 | 0.05 | 14.04 | 0.00 | 2.148 | 13.10 | 0.67 | 11.5 | 88.5 | 0.0 | -4.38 | 0.63 | 0.82 | 1.64 | 3.9 | 0.004 | 0.77 | 0.0 | 0.04 | 16.57 | 0.00 | 2.157 | 13.06 | 0.92 | 8.7 | 91.3 | 0.0 | -0.44 | 1.36 | 0.63 | 0.81 | 1.60 | 22264 | 2704 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYB | 0541 | 2022-12-12 | 2019-02-11 | 4.1 | 4.15 | — | 4.0 | 0.014 | 1.76 | 3.0 | 0.09 | 14.33 | 0.00 | 2.070 | 7.08 | 3.66 | 5.4 | 94.4 | 0.2 | -3.02 | 0.75 | 0.74 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 1.951 | 12.41 | 0.00 | 3.4 | 96.6 | 0.0 | 0.26 | 2.60 | 0.78 | 0.80 | — | 8842 | 1097 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XYo | 10650 | 2022-12-11 | 2020-01-30 | 2.6 | 2.79 | 2.31 | 2.7 | 0.008 | 0.74 | 0.0 | 0.06 | 12.93 | 0.00 | 2.300 | 5.78 | 0.93 | 2.6 | 97.4 | 0.0 | -2.90 | 0.46 | 0.89 | 5.98 | 2.7 | 0.005 | 0.56 | 0.0 | 0.05 | 18.01 | 0.00 | 2.263 | 4.36 | 1.48 | 3.2 | 96.8 | 0.0 | -1.79 | 0.96 | 0.48 | 0.91 | 4.66 | 5490 | 800 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P4H | 20249 | 2022-12-15 | 2019-05-27 | 3.2 | 3.13 | 3.20 | 3.1 | 0.010 | 1.43 | 0.0 | 0.10 | 16.95 | 0.00 | 2.179 | 2.65 | 2.17 | 6.6 | 92.8 | 0.7 | -3.62 | 0.67 | 0.75 | 2.61 | 3.1 | 0.006 | 0.76 | 0.0 | 0.04 | 17.67 | 0.01 | 1.956 | 12.47 | 0.91 | 5.7 | 94.3 | 0.0 | -0.91 | 0.66 | 0.78 | 0.82 | 2.02 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2022-12-15 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 0.248 | 26.65 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.69 | 0.79 | 2.57 | 3.0 | 0.006 | 0.91 | 3.0 | 0.05 | 16.54 | 0.01 | 1.702 | 20.56 | 3.00 | 4.6 | 95.3 | 0.1 | 0.04 | 0.99 | 0.72 | 0.84 | 2.98 | 26624 | 3384 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 5Z3V | 6883 | 2022-12-13 | 2018-01-08 | 4.22 | 3.73 | — | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 23.01 | 0.00 | 2.160 | 13.07 | 0.00 | 7.8 | 92.2 | 0.0 | -2.72 | 0.69 | 0.74 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 24.49 | 0.00 | 2.166 | 11.34 | 0.09 | 4.7 | 95.2 | 0.1 | 0.59 | 0.85 | 0.70 | 0.73 | — | 16758 | 1339 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 6MHQ | 9116 | 2022-12-16 | 2018-09-18 | 3.4 | 3.50 | — | 3.5 | 0.018 | 0.80 | 0.0 | 0.08 | 12.18 | 0.00 | 2.210 | 6.75 | 3.14 | 5.8 | 94.2 | 0.0 | -1.67 | 0.73 | 0.83 | 2.60 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 15.39 | 0.00 | 2.088 | 11.34 | 0.84 | 5.0 | 95.0 | 0.0 | 2.21 | 1.06 | 0.72 | 0.86 | 2.42 | 32640 | 2124 | 12 | 0 | 0 | 0 | 15264 | logfile |
✔ | 5H1Q | 9570 | 2022-12-15 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 16.35 | 0.00 | 2.155 | 9.62 | 1.36 | 9.8 | 89.7 | 0.6 | -0.26 | 0.83 | 0.55 | 0.79 | 1.87 | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SB3 | 10134 | 2022-12-15 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 16.11 | 0.01 | 2.025 | 19.45 | 0.76 | 8.0 | 92.0 | 0.0 | -1.75 | 1.63 | 0.71 | 0.77 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6SEF | 10154 | 2022-12-12 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.92 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.5 | 0.006 | 0.76 | 0.0 | 0.04 | 29.08 | 0.00 | 2.045 | 19.77 | 1.13 | 2.9 | 97.1 | 0.0 | 0.51 | 0.71 | 0.89 | 0.85 | 1.80 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6UPH | 20839 | 2022-12-12 | 2019-10-17 | 2.7 | 3.01 | 2.85 | 3.0 | 0.007 | 0.67 | 0.0 | 0.04 | 26.16 | 0.00 | 2.216 | 4.43 | 0.00 | 1.8 | 98.2 | 0.0 | -5.67 | 0.70 | 0.87 | 4.13 | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 27.56 | 0.00 | 2.106 | 4.02 | 1.13 | 1.1 | 98.9 | 0.0 | 1.10 | 0.35 | 0.66 | 0.87 | 2.38 | 10677 | 732 | 10 | 238 | 0 | 0 | 0 | logfile |
✔ | 6KLC | 0706 | 2022-12-12 | 2019-07-30 | 3.9 | 3.97 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.24 | 0.00 | 2.198 | 11.06 | 0.64 | 9.3 | 90.5 | 0.2 | -3.27 | 0.73 | 0.77 | 1.53 | 3.9 | 0.004 | 0.81 | 0.0 | 0.05 | 16.14 | 0.00 | 2.094 | 13.94 | 0.56 | 10.2 | 89.8 | 0.1 | -0.58 | 1.54 | 0.74 | 0.78 | 1.11 | 11210 | 1436 | 1 | 0 | 1 | 0 | 0 | logfile |