Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6E7C	8998	2021-06-01	2018-07-25	3.65	3.83	3.42	3.8	0.008	0.81	0.0	0.05	12.42	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.004	0.76	0.0	0.04	16.41	0.00	2.006	17.64	0.27	4.5	95.5	0.0	-1.97	1.42	0.50	0.77	2.20	6780	854	4	0	4	0	0	logfile
✔	6U5W	20658	2021-06-06	2019-08-28	3.3	4.24	—	3.7	0.010	0.85	6.0	0.05	13.69	0.00	0.153	29.88	0.33	8.2	91.6	0.3	-3.64	0.90	0.85	1.93	3.7	0.004	0.74	1.0	0.04	15.34	0.01	1.653	16.94	0.16	5.0	95.0	0.0	-0.33	0.55	0.91	0.87	1.58	164892	20808	24	0	18	0	0	logfile
✔	6SH4	10193	2021-06-02	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.75	0.0	0.04	4.93	0.00	2.224	1.65	0.00	8.9	90.8	0.3	-0.26	2.30	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	6V8o	21107	2021-06-03	2019-12-11	3.07	3.27	3.04	3.3	0.004	0.55	0.0	0.04	11.21	0.00	2.149	6.66	2.31	6.9	93.0	0.1	-1.57	0.67	0.77	1.92	3.2	0.003	0.57	0.0	0.04	15.21	0.00	2.086	7.46	0.22	5.0	95.0	0.0	1.62	2.89	0.73	0.84	1.78	25103	3012	23	0	145	0	0	logfile
✔	6Li3	0902	2021-06-01	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.53	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.8	0.004	0.66	0.0	0.04	17.11	0.00	2.168	10.69	0.33	4.2	95.8	0.0	-0.13	1.80	0.61	0.78	1.94	8289	1045	5	0	0	0	0	logfile
✔	6MYY	9294	2021-06-03	2018-11-02	3.8	3.92	—	3.8	0.015	1.30	0.0	0.08	10.95	0.00	2.302	0.96	0.30	3.3	96.5	0.1	-0.23	0.76	0.80	1.97	3.8	0.004	0.64	0.0	0.04	13.18	0.00	2.146	9.80	0.05	3.9	96.0	0.1	0.39	1.52	0.77	0.81	2.24	20139	2307	12	0	156	0	0	logfile
✔	6oR5	9032	2021-06-02	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.58	0.0	0.04	9.07	0.00	2.142	4.78	0.00	14.9	85.1	0.0	-1.17	1.35	0.78	0.80	—	10364	2058	1	0	5	0	0	logfile
✔	6P1H	20235	2021-06-02	2019-05-19	3.2	3.64	—	3.5	0.009	0.89	0.0	0.05	15.83	0.00	1.939	14.44	0.07	9.2	90.2	0.7	-3.47	0.84	0.88	2.96	3.5	0.003	0.68	0.0	0.04	16.78	0.00	2.192	10.11	0.43	6.7	93.2	0.1	-1.11	0.52	0.84	0.88	2.52	13006	1539	10	27	7	44	0	logfile
✔	6G8Z	4362	2021-06-02	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.002	0.55	0.0	0.04	13.52	0.00	2.160	6.24	0.28	2.7	97.3	0.0	2.29	1.27	0.71	0.85	2.67	15966	1908	6	0	0	0	0	logfile
✔	6C3o	7338	2021-06-05	2018-01-10	3.9	3.58	—	3.6	0.006	0.92	0.0	0.05	10.43	0.00	1.661	15.20	0.32	7.4	92.6	0.0	-3.06	0.40	0.56	1.23	3.5	0.004	0.80	0.0	0.04	15.79	0.01	2.038	14.22	0.82	5.2	94.8	0.0	0.16	2.07	0.64	0.72	1.14	49055	6472	16	0	23	0	0	logfile
✔	5WFE	8827	2021-06-02	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.72	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.003	0.72	0.0	0.04	23.96	0.00	2.096	16.32	0.17	3.9	96.1	0.0	0.51	2.33	0.84	0.75	1.51	15523	1447	12	210	0	0	0	logfile
✔	6GYL	0091	2021-06-05	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.13	0.16	6.2	92.7	1.1	-3.33	0.32	0.00	—	3.3	0.003	0.79	0.0	0.04	14.39	0.01	2.097	19.63	0.00	7.2	92.6	0.2	-1.51	2.19	0.52	0.21	—	43409	5250	30	112	11	0	0	logfile
✔	6GC7	4382	2021-06-05	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.009	0.76	0.0	0.04	15.78	0.01	1.935	30.67	0.07	9.6	90.2	0.2	-2.10	1.75	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile
✔	6GC6	4381	2021-06-05	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.81	0.0	0.04	16.28	0.01	2.006	34.63	0.00	10.3	89.7	0.0	-2.39	2.23	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6GC0	4379	2021-06-02	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	3.9	0.006	0.77	0.0	0.04	16.12	0.01	1.974	23.88	1.05	11.8	88.1	0.1	-2.50	3.82	0.78	0.77	1.24	84138	2950	28	2848	0	0	0	logfile
✔	6QG2	4545	2021-06-04	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.66	7.64	13.2	83.4	3.4	-1.88	0.58	0.38	—	4.5	0.004	0.83	0.0	0.05	15.43	0.01	1.814	16.50	0.00	9.2	90.2	0.6	-1.34	1.70	0.69	0.56	—	38664	4961	16	0	0	0	0	logfile
✔	6oEo	20032	2021-06-02	2019-03-27	3.69	4.00	—	3.8	0.005	0.72	0.0	0.05	21.45	0.00	1.892	14.16	0.12	8.2	91.7	0.2	-4.21	0.84	0.84	2.52	3.8	0.004	0.66	0.0	0.04	21.70	0.00	2.047	12.26	0.24	6.3	93.6	0.1	-0.86	0.47	0.84	0.84	2.26	19516	1970	11	206	6	0	0	logfile
✔	6QG0	4543	2021-06-04	2019-01-10	4.15	4.29	4.10	4.3	0.009	1.40	20.0	0.08	18.07	0.00	0.775	5.27	5.91	10.0	87.6	2.4	-3.14	0.56	0.68	—	4.2	0.005	0.87	0.0	0.05	14.96	0.01	2.060	16.00	0.05	9.2	90.2	0.7	-1.61	1.75	0.58	0.65	—	36980	4742	16	0	0	0	0	logfile
✔	6H3J	0134	2021-06-03	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.003	0.58	0.0	0.04	13.38	0.00	1.918	53.82	0.23	18.7	81.3	0.0	-5.02	1.08	0.77	0.86	2.80	20301	2511	3	0	0	0	212	logfile
✔	6PiG	20350	2021-06-03	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.75	1.0	0.09	16.07	0.00	2.173	1.95	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.005	0.86	0.0	0.05	17.39	0.01	2.077	11.96	0.63	16.2	83.2	0.6	-3.06	2.00	0.65	0.80	2.41	28867	3439	11	60	0	0	0	logfile

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