Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Li7	23362	2023-09-28	2021-01-26	4.1	4.15	—	4.2	0.002	0.61	0.0	0.06	12.21	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.66	0.0	0.04	12.76	0.00	2.215	13.30	0.00	5.8	94.2	0.0	-1.41	0.98	0.66	0.77	—	6177	765	5	0	13	0	0	logfile
✔	7BJ2	12193	2023-09-29	2021-01-13	3.0	3.64	3.01	3.2	0.003	0.62	0.0	0.04	14.87	0.00	2.246	12.91	0.00	4.0	96.0	0.0	0.20	0.72	0.80	2.36	3.2	0.007	0.70	0.0	0.04	16.76	0.00	2.230	13.68	1.03	5.9	94.1	0.0	-0.07	0.53	0.74	0.91	2.91	58552	7956	26	0	0	0	0	logfile
✔	7SC0	25007	2023-09-30	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.003	0.59	0.0	0.04	14.15	0.00	2.371	1.37	0.54	9.0	90.2	0.8	-0.63	1.49	0.68	0.82	2.11	11638	1419	11	0	0	0	0	logfile
✔	7X1W	32951	2023-09-29	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	14.72	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.002	0.55	0.0	0.04	16.01	0.00	2.277	7.64	0.10	5.2	94.8	0.0	0.37	1.90	0.63	0.84	1.87	9315	1159	4	0	2	0	0	logfile
✔	8A1R	15084	2023-09-29	2022-06-01	3.6	5.63	3.62	3.4	0.014	1.35	0.0	0.05	15.14	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.77	1.0	0.05	16.10	0.00	2.170	19.32	0.41	5.9	94.1	0.0	-0.55	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7WRi	32727	2023-09-28	2022-01-26	3.03	3.18	—	3.2	0.003	0.58	1.0	0.04	15.51	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	3.1	0.002	0.57	0.0	0.04	16.69	0.00	2.091	8.27	0.00	6.6	93.4	0.0	-0.56	0.40	0.74	0.83	1.87	6431	790	4	0	2	0	0	logfile
✔	7WL7	32576	2023-09-30	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.96	0.0	0.05	14.50	0.00	1.998	18.25	0.80	7.1	92.7	0.2	-0.46	0.94	0.79	0.79	1.93	10198	1330	2	0	0	0	0	logfile
✔	7NPW	12524	2023-09-30	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.78	0.0	0.05	16.19	0.00	2.160	16.52	0.66	4.0	96.0	0.0	0.75	0.62	0.56	0.81	1.26	9723	1278	3	0	0	0	0	logfile
✔	7V22	31634	2023-09-27	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7LBY	23267	2023-09-30	2021-01-09	4.2	4.35	—	4.3	0.003	0.78	0.0	0.05	12.33	0.00	2.148	4.15	0.00	6.2	92.5	1.3	-0.24	0.56	0.69	—	4.3	0.002	0.65	0.0	0.04	11.98	0.00	2.125	6.81	0.00	6.5	93.1	0.4	0.24	0.60	0.57	0.71	—	8800	1418	2	0	0	0	0	logfile
✔	7WLE	32583	2023-09-30	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.3	0.004	0.88	0.0	0.05	14.75	0.00	2.079	20.16	0.53	7.2	92.8	0.0	-0.82	1.84	0.80	0.78	1.55	10188	1324	2	0	0	0	0	logfile
✔	8HM0	34887	2023-09-30	2022-12-02	3.1	3.43	3.01	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.004	0.69	0.0	0.05	16.68	0.00	2.163	11.66	0.51	7.9	92.1	0.0	-1.80	0.48	0.76	0.81	2.12	11331	1474	3	0	0	0	0	logfile
✔	7V24	31636	2023-09-27	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.005	0.69	0.0	0.04	15.40	0.00	2.137	11.23	0.00	10.4	89.6	0.0	-1.14	0.40	0.66	0.84	3.54	3814	487	3	0	0	0	0	logfile
✔	7Yoo	33985	2023-09-29	2022-08-01	3.11	2.28	—	3.2	0.002	0.45	0.0	0.04	13.30	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.51	0.0	0.04	15.22	0.00	2.198	4.86	0.40	2.4	97.6	0.0	0.78	0.93	0.79	0.84	3.27	9188	1169	6	0	0	0	0	logfile
✔	7ZCF	14629	2023-09-27	2022-03-28	4.0	4.23	3.97	4.2	0.003	0.66	0.0	0.04	14.12	0.00	2.089	10.15	0.56	14.8	85.2	0.0	-2.45	0.67	0.71	—	4.2	0.004	0.77	0.0	0.05	16.06	0.00	2.129	14.91	1.40	19.8	80.2	0.0	-3.01	0.62	0.70	0.78	—	3312	426	3	0	1	0	0	logfile
✔	8iY6	35815	2023-09-28	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.004	0.71	0.0	0.04	14.61	0.00	2.153	10.66	1.77	2.0	98.0	0.0	1.86	1.26	0.42	0.64	1.51	2495	314	2	0	0	0	0	logfile
✔	7CUN	30473	2023-09-29	2020-08-23	3.5	3.56	—	3.4	0.002	0.64	2.0	0.05	10.98	0.00	1.905	6.88	0.00	6.7	92.6	0.7	-2.80	0.79	0.73	1.40	3.4	0.007	0.83	0.0	0.05	14.25	0.00	2.026	13.10	0.73	9.6	90.2	0.2	-0.62	1.28	0.81	0.78	1.70	57642	7839	14	0	307	0	0	logfile
✔	8BCZ	15971	2023-09-29	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.56	0.0	0.04	13.91	0.00	2.142	6.64	3.01	3.0	97.0	0.0	0.66	0.88	0.63	0.83	4.16	8505	1100	9	0	0	0	0	logfile
✔	6SGZ	10191	2023-09-30	2019-08-05	3.9	4.15	—	4.0	0.003	0.70	0.0	0.04	13.52	0.00	2.203	12.28	0.00	10.3	89.4	0.3	-4.16	0.66	0.82	1.40	4.0	0.003	0.75	0.0	0.04	15.36	0.00	2.142	12.06	0.26	9.3	90.6	0.1	-0.34	1.26	0.65	0.82	1.16	11177	1505	5	0	0	0	0	logfile
✔	7N95	24250	2023-09-28	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile

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