Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	7RU3	24695	2023-02-26	2021-08-16	3.3	4.03	3.38	3.7	0.022	1.84	0.0	0.11	10.60	0.01	2.056	1.17	0.32	3.2	96.8	0.0	0.61	0.84	0.81	2.55	3.7	0.003	0.66	0.0	0.04	13.37	0.00	2.145	8.96	0.19	3.8	96.0	0.1	0.40	0.73	0.85	0.84	1.94	28157	3537	16	0	42	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6oWS	20216	2023-02-24	2019-05-10	2.98	3.32	—	3.3	0.009	1.04	3.0	0.06	15.56	0.01	2.216	3.59	6.03	3.7	96.1	0.2	-5.39	0.73	0.80	3.03	3.3	0.003	0.69	0.0	0.04	16.49	0.00	2.164	6.88	2.49	2.4	97.6	0.0	0.04	2.24	0.76	0.84	2.98	23651	3069	6	0	6	0	0	logfile
✔	7RU5	24697	2023-02-26	2021-08-16	3.6	4.35	3.76	3.7	0.020	1.81	0.0	0.11	10.31	0.01	2.413	0.95	0.06	2.9	97.1	0.0	0.47	0.84	0.72	2.57	3.8	0.004	0.65	0.0	0.04	12.62	0.00	2.143	11.58	0.13	4.2	95.7	0.1	0.17	0.62	0.85	0.77	1.98	28673	3611	20	0	40	0	0	logfile
✔	7P3R	13185	2023-02-18	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.004	0.59	0.0	0.04	14.62	0.00	2.160	5.04	0.28	2.3	97.7	0.0	3.53	0.58	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	6GCS	4384	2023-02-22	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.02	0.01	2.231	8.78	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.66	0.00	2.049	20.00	0.00	13.2	86.5	0.3	-2.20	0.78	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile
✔	7JJJ	22354	2023-02-22	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.68	0.0	0.05	11.96	0.00	2.093	11.87	0.00	4.1	95.9	0.0	0.03	1.43	0.79	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	7TXZ	26162	2023-02-20	2022-02-10	3.2	3.25	3.11	3.2	0.016	1.48	0.0	0.09	10.07	0.01	2.400	0.32	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.62	0.0	0.05	13.42	0.00	2.111	7.66	0.00	3.0	96.9	0.1	0.26	0.54	0.73	0.85	4.03	11303	1464	22	0	29	0	0	logfile
✔	8GWG	34312	2023-02-24	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.85	0.0	0.04	17.35	0.01	2.073	20.42	0.70	8.6	91.2	0.2	-2.15	1.82	0.77	0.63	0.57	21955	2668	13	52	9	1	0	logfile
✔	7TY0	26163	2023-02-19	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.48	1.0	0.10	8.96	0.01	2.417	1.03	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.003	0.64	0.0	0.05	12.57	0.00	1.964	6.61	0.65	3.8	96.2	0.0	0.43	0.59	0.72	0.76	3.63	10640	1522	18	0	24	0	0	logfile
✔	6FU8	4319	2023-02-16	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7LUV	23527	2023-02-22	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.89	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.002	0.61	0.0	0.04	13.35	0.00	2.152	6.93	0.45	5.2	94.8	0.0	0.42	0.90	0.77	0.82	1.91	18773	2168	6	0	210	0	0	logfile
✔	7PP4	13579	2023-02-24	2021-09-13	3.84	4.20	3.93	4.0	0.002	0.48	0.0	0.04	9.43	0.00	1.926	5.55	0.39	3.3	96.7	0.0	-0.03	0.83	0.80	1.49	4.0	0.005	0.72	0.0	0.04	13.88	0.00	2.041	11.96	0.35	5.4	94.6	0.0	-0.35	1.35	0.84	0.84	1.18	23816	3059	7	0	3	0	0	logfile
✔	7NVX	12616	2023-02-24	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.82	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	6YJ4	10815	2023-02-25	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.92	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.5	0.005	1.03	0.0	0.18	16.84	0.00	1.386	6.85	1.61	3.4	96.6	0.0	0.76	0.57	0.63	0.84	3.71	66311	8126	94	0	50	275	0	logfile
✔	7VB0	31873	2023-02-27	2021-08-30	3.6	2.84	3.39	3.2	0.003	0.55	0.0	0.04	13.49	0.00	1.982	6.16	0.00	1.9	98.1	0.0	0.96	0.63	0.78	2.84	3.2	0.002	0.54	0.0	0.04	16.23	0.00	2.005	8.35	0.23	2.1	97.9	0.0	0.54	0.72	0.65	0.79	2.41	29553	3788	16	0	5	0	0	logfile
✔	7FEB	31551	2023-02-24	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.004	0.65	0.0	0.05	16.54	0.01	2.050	9.13	2.83	1.5	98.5	0.0	0.44	1.95	0.75	0.85	3.22	24075	3024	9	0	0	0	0	logfile
✔	6GiY	0008	2023-02-26	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.17	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.003	0.77	0.0	0.04	12.12	0.01	2.107	11.70	0.00	10.4	89.5	0.1	-2.19	0.92	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	8BD5	15975	2023-02-26	2022-10-18	3.3	3.58	3.17	2.2	0.004	0.62	0.0	0.04	20.38	0.00	1.983	16.59	0.76	3.1	96.8	0.0	0.06	0.78	0.79	1.35	2.2	0.005	0.63	0.0	0.04	20.42	0.00	1.842	16.33	0.22	3.2	96.8	0.0	0.19	0.73	0.79	0.82	1.35	28398	2671	21	328	16	0	0	logfile

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