Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B0S	11970	2023-08-16	2020-11-21	3.6	3.73	—	3.6	0.009	0.77	0.0	0.04	16.07	0.00	2.214	7.36	0.35	6.2	93.8	0.0	-0.53	0.83	0.86	2.66	3.6	0.003	0.56	0.0	0.04	16.85	0.00	2.225	4.20	0.22	2.5	97.5	0.0	1.27	0.36	0.82	0.85	1.80	21076	2572	8	0	12	0	0	logfile
✔	6TAU	10428	2023-08-10	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.003	0.63	0.0	0.04	17.43	0.00	2.202	7.23	0.79	6.0	94.0	0.0	0.47	0.65	0.56	0.76	1.46	8148	984	6	0	0	0	0	logfile
✔	7DTU	30854	2023-08-12	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	7TD1	25820	2023-08-13	2021-12-30	3.08	3.31	—	3.3	0.003	0.43	0.0	0.04	11.99	0.00	2.168	2.81	0.28	1.9	98.1	0.0	-0.56	0.52	0.74	3.38	3.3	0.005	0.54	0.0	0.04	14.69	0.00	1.897	8.06	0.00	4.1	95.9	0.0	0.97	1.25	0.53	0.78	3.55	13492	906	5	0	1	0	6593	logfile
✔	7FCE	31525	2023-08-18	2021-07-14	3.1	3.19	—	3.1	0.010	0.98	0.0	0.07	12.91	0.01	2.343	1.98	0.99	4.6	95.3	0.2	-0.85	0.73	0.74	1.96	3.1	0.003	0.60	0.0	0.04	15.00	0.00	2.176	4.45	0.11	3.7	96.2	0.0	0.02	1.43	0.82	0.88	3.12	25542	3125	33	0	78	0	0	logfile
✔	7PLS	13499	2023-08-13	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.46	0.00	2.275	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.54	0.0	0.04	16.30	0.00	2.245	3.97	0.80	5.6	94.4	0.0	0.62	0.95	0.76	0.88	5.20	14224	1724	12	0	4	52	0	logfile
✔	7EG6	31106	2023-08-12	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.64	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.55	0.0	0.03	28.24	0.00	2.190	5.69	0.16	1.7	98.3	0.0	3.31	1.16	0.89	0.88	2.59	12118	779	11	292	0	0	0	logfile
✔	6X3W	22035	2023-08-15	2020-05-21	3.3	3.32	3.16	3.3	0.008	1.16	1.0	0.08	13.45	0.01	2.211	5.55	0.85	4.3	95.7	0.0	-2.06	0.73	0.86	3.98	3.3	0.004	0.62	0.0	0.04	15.44	0.00	2.149	9.68	0.53	3.9	96.1	0.0	0.01	0.48	0.74	0.89	3.49	17399	2121	17	0	25	0	0	logfile
✔	6W2Y	21534	2023-08-11	2020-03-08	3.2	3.42	—	3.4	0.007	0.73	0.0	0.06	14.63	0.00	2.193	10.12	0.12	8.3	91.7	0.0	-3.95	0.67	0.78	2.98	3.4	0.004	0.68	0.0	0.04	15.07	0.00	2.170	8.94	0.48	3.7	96.3	0.0	-0.21	0.53	0.64	0.79	2.73	9721	1327	6	0	14	0	0	logfile
✔	7Si6	25138	2023-08-13	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.003	0.85	0.0	0.04	14.76	0.00	1.919	4.22	0.41	1.7	98.3	0.0	2.52	0.39	0.52	0.82	1.82	13515	873	1	0	2	0	6910	logfile
✔	5JUY	8178	2023-08-18	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	7NJQ	12407	2023-08-18	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.45	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.005	0.55	0.0	0.04	15.81	0.00	1.670	5.87	0.65	2.5	97.5	0.1	1.45	0.90	0.86	0.89	4.13	74669	4936	31	0	11	16	37357	logfile
✔	6J9E	9785	2023-08-18	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.31	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.004	0.62	0.0	0.04	16.64	0.00	1.998	6.84	0.54	3.7	96.3	0.0	0.16	0.63	0.80	0.84	1.55	24427	3203	11	63	3	0	0	logfile
✔	6XJB	22205	2023-08-11	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.64	0.0	0.04	15.19	0.00	2.043	13.87	0.19	7.8	92.2	0.0	-1.33	1.82	0.88	0.85	2.02	10070	1277	1	0	0	0	0	logfile
✔	7E7B	30998	2023-08-19	2021-02-25	2.6	2.79	—	2.7	0.011	0.95	3.0	0.07	15.09	0.02	2.198	4.93	5.49	3.6	96.4	0.0	-2.02	0.83	0.87	4.58	2.7	0.003	0.57	0.0	0.04	15.48	0.00	2.168	4.28	1.49	2.7	97.3	0.0	-0.23	0.43	0.82	0.88	4.25	27363	3306	48	0	99	36	0	logfile
✔	7CKQ	30390	2023-08-19	2020-07-18	4.4	4.50	—	4.4	0.003	0.69	0.0	0.05	15.78	0.01	2.153	5.20	0.30	5.6	94.4	0.0	-4.73	0.76	0.63	—	4.4	0.003	0.70	0.0	0.04	15.81	0.00	1.934	16.24	0.08	6.2	93.7	0.0	-1.70	0.95	0.81	0.73	—	27484	3588	14	87	5	0	0	logfile
✔	7DTV	30855	2023-08-12	2021-01-06	3.5	3.53	—	3.5	0.008	0.94	0.0	0.07	14.93	0.01	2.189	5.29	0.00	9.8	90.1	0.1	-4.67	0.75	0.83	2.62	3.5	0.003	0.57	0.0	0.04	15.44	0.00	2.190	5.29	0.11	7.2	92.8	0.0	-1.10	0.43	0.73	0.78	2.40	11276	1560	8	0	22	0	0	logfile
✔	6B70	7062	2023-08-17	2017-10-03	3.7	4.28	4.09	4.1	0.011	1.26	0.0	0.07	11.30	0.01	2.192	6.22	0.00	4.0	96.0	0.0	-3.94	0.89	0.80	2.01	4.1	0.003	0.73	0.0	0.04	14.33	0.00	2.173	11.10	0.00	5.5	94.5	0.0	-0.47	0.78	0.89	0.81	1.39	22192	2783	8	0	0	0	0	logfile
✔	7Si7	25139	2023-08-12	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.92	0.0	0.04	15.00	0.00	1.950	5.49	0.17	3.1	96.9	0.0	2.10	0.51	0.51	0.83	0.96	11287	728	1	0	2	0	5777	logfile
✔	7KPW	22990	2023-08-09	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile

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