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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JBS | 6478 | 2023-02-16 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2023-02-17 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.90 | 1.0 | 0.07 | 17.55 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.005 | 1.17 | 0.0 | 0.04 | 18.69 | 0.01 | 2.149 | 16.73 | 2.14 | 8.6 | 91.4 | 0.0 | -2.15 | 0.93 | 0.21 | 0.66 | 0.77 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 7CHH | 30374 | 2023-02-26 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.09 | 0.0 | 0.06 | 15.08 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.012 | 1.20 | 0.0 | 0.06 | 16.17 | 0.01 | 1.881 | 22.73 | 0.74 | 8.9 | 91.0 | 0.1 | -2.21 | 1.48 | 0.21 | 0.15 | 0.59 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2023-02-21 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 18.34 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 16.96 | 0.00 | 2.198 | 7.63 | 0.62 | 4.5 | 95.5 | 0.0 | -0.49 | 0.70 | 0.21 | 0.84 | 2.89 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2023-02-16 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 12.52 | 0.00 | 2.497 | 2.63 | 1.48 | 8.3 | 91.7 | 0.0 | -3.27 | 1.13 | 0.22 | 0.72 | 4.36 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 7LJ3 | 23388 | 2023-02-25 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.003 | 0.60 | 0.0 | 0.03 | 19.24 | 0.00 | 2.017 | 7.67 | 4.04 | 4.5 | 95.4 | 0.2 | 2.58 | 1.42 | 0.22 | 0.79 | 1.76 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 8B6Z | 15893 | 2023-02-17 | 2022-09-27 | 2.9 | 3.26 | 3.37 | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 10.48 | 0.00 | 2.286 | 0.59 | 0.27 | 1.4 | 98.6 | 0.0 | -0.69 | 0.20 | 0.56 | 1.62 | 2.8 | 0.003 | 0.67 | 0.0 | 0.05 | 14.28 | 0.01 | 2.187 | 8.15 | 0.27 | 3.6 | 96.4 | 0.0 | 0.04 | 1.46 | 0.23 | 0.76 | 2.02 | 3581 | 442 | 2 | 8 | 0 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2023-02-20 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 8.91 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.82 | 0.0 | 0.04 | 17.26 | 0.01 | 2.034 | 19.30 | 1.33 | 10.7 | 88.1 | 1.1 | -2.35 | 1.54 | 0.23 | 0.63 | 0.72 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 7BC5 | 12139 | 2023-02-16 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.04 | 0.00 | 2.243 | 14.42 | 0.76 | 7.5 | 92.5 | 0.0 | -2.75 | 1.30 | 0.23 | 0.58 | 0.92 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-02-16 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7FG3 | 31577 | 2023-02-18 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.23 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2023-02-24 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 12.81 | 0.00 | 2.059 | 20.22 | 0.00 | 8.3 | 90.8 | 0.9 | -1.16 | 2.72 | 0.24 | 0.30 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2023-02-17 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 6iAC | 4435 | 2023-02-18 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.004 | 0.91 | 0.0 | 0.05 | 16.30 | 0.00 | 2.076 | 13.77 | 0.86 | 8.4 | 91.6 | 0.0 | -0.67 | 1.03 | 0.26 | 0.76 | 1.34 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-02-21 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.5 | 0.006 | 1.23 | 0.0 | 0.06 | 14.56 | 0.01 | 1.854 | 41.71 | 0.00 | 6.7 | 93.3 | 0.0 | -3.29 | 3.82 | 0.26 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHL | 21207 | 2023-02-16 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 16.24 | 0.00 | 2.321 | 8.71 | 0.00 | 8.7 | 91.3 | 0.0 | -3.58 | 2.81 | 0.26 | 0.69 | 3.41 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2023-02-21 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 5.99 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.60 | 0.0 | 0.03 | 16.58 | 0.00 | 2.112 | 10.83 | 0.70 | 3.9 | 96.1 | 0.0 | -1.17 | 0.66 | 0.26 | 0.77 | 1.97 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-02-16 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7oG6 | 12879 | 2023-02-16 | 2021-05-06 | 3.3 | 3.47 | — | 2.9 | 0.008 | 0.82 | 0.0 | 0.04 | 17.33 | 0.01 | 2.325 | 7.36 | 6.10 | 9.6 | 90.4 | 0.0 | -4.47 | 0.28 | 0.82 | 2.77 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.45 | 0.00 | 2.215 | 10.56 | 0.00 | 6.6 | 93.4 | 0.0 | -0.32 | 0.52 | 0.27 | 0.84 | 3.03 | 1602 | 199 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2023-02-16 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.25 | 0.00 | 2.290 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -1.23 | 0.40 | 0.27 | 0.80 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |