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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LJ3 | 23388 | 2024-03-19 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 20.50 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.004 | 0.64 | 0.0 | 0.03 | 21.90 | 0.00 | 2.018 | 8.16 | 4.04 | 4.9 | 94.9 | 0.2 | 2.36 | 1.40 | 0.22 | 0.79 | 1.85 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 7VZ3 | 32219 | 2024-03-17 | 2021-11-15 | 2.46 | 2.36 | 2.43 | 19.0 | 0.009 | 1.08 | 2.0 | 0.07 | 12.80 | 0.01 | 2.203 | 4.37 | 0.26 | 5.4 | 94.5 | 0.1 | -1.44 | 0.12 | 0.02 | 0.32 | 2.2 | 0.005 | 0.92 | 1.0 | 0.05 | 14.34 | 0.01 | 1.998 | 15.23 | 1.79 | 6.2 | 93.7 | 0.1 | -1.36 | 1.71 | 0.22 | 0.15 | 0.55 | 17415 | 2256 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B6Z | 15893 | 2024-03-10 | 2022-09-27 | 2.9 | 3.26 | 3.37 | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 12.07 | 0.00 | 2.286 | 0.59 | 0.27 | 1.4 | 98.6 | 0.0 | -0.69 | 0.20 | 0.56 | 1.62 | 2.8 | 0.003 | 0.68 | 0.0 | 0.05 | 15.17 | 0.01 | 2.178 | 8.53 | 1.07 | 3.6 | 96.4 | 0.0 | -0.18 | 1.05 | 0.23 | 0.76 | 1.77 | 3581 | 442 | 2 | 8 | 0 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2024-03-10 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.3 | 0.003 | 0.54 | 0.0 | 0.05 | 12.51 | 0.00 | 2.548 | 1.31 | 1.48 | 10.4 | 89.6 | 0.0 | -3.05 | 1.13 | 0.23 | 0.72 | 3.90 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 3JC2 | 3245 | 2024-03-10 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.83 | 0.0 | 0.04 | 17.12 | 0.00 | 2.209 | 14.20 | 3.66 | 6.6 | 92.8 | 0.6 | -1.30 | 2.30 | 0.23 | 0.52 | 1.41 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 5A8L | 3099 | 2024-03-15 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 21.13 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.85 | 0.0 | 0.04 | 23.10 | 0.01 | 2.082 | 20.16 | 3.98 | 11.9 | 87.3 | 0.8 | -2.35 | 1.86 | 0.23 | 0.63 | 0.31 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2024-03-14 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.90 | 0.0 | 0.05 | 16.67 | 0.01 | 2.017 | 24.21 | 3.48 | 15.3 | 84.1 | 0.6 | -3.68 | 0.72 | 0.23 | 0.46 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JoU | 36462 | 2024-03-12 | 2023-06-08 | 4.1 | 6.13 | 3.95 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 12.09 | 0.01 | 0.759 | 16.82 | 0.49 | 7.7 | 90.4 | 1.9 | -1.54 | 0.17 | 0.37 | — | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 11.93 | 0.00 | 2.055 | 23.73 | 0.08 | 8.5 | 89.8 | 1.7 | -1.53 | 1.41 | 0.23 | 0.86 | — | 62425 | 8135 | 70 | 0 | 590 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2024-03-10 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 15.68 | 0.00 | 2.242 | 15.40 | 2.78 | 11.2 | 87.5 | 1.2 | -1.93 | 3.97 | 0.23 | 0.60 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 3JAU | 6366 | 2024-03-12 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.37 | 0.00 | 2.144 | 19.50 | 0.00 | 3.7 | 95.9 | 0.4 | -0.66 | 1.39 | 0.24 | 0.60 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 8UoP | 42435 | 2024-03-15 | 2023-10-20 | 3.8 | 3.97 | 3.89 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 16.45 | 0.01 | 1.954 | 17.97 | 0.73 | 15.7 | 83.6 | 0.7 | -3.60 | 0.18 | 0.15 | 0.40 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.20 | 0.00 | 1.949 | 14.94 | 4.40 | 11.8 | 87.9 | 0.3 | -3.15 | 0.92 | 0.24 | 0.24 | 0.27 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 6KFK | 9974 | 2024-03-12 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 12.96 | 0.00 | 2.067 | 21.77 | 0.00 | 7.8 | 91.3 | 0.9 | -1.51 | 2.73 | 0.24 | 0.31 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RED | 4850 | 2024-03-22 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.61 | 0.01 | 2.140 | 5.83 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.004 | 0.80 | 0.0 | 0.05 | 15.82 | 0.01 | 1.837 | 19.88 | 2.41 | 5.4 | 94.4 | 0.1 | -1.04 | 0.96 | 0.24 | 0.16 | 0.19 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 7BC5 | 12139 | 2024-03-10 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.004 | 0.74 | 0.0 | 0.04 | 17.50 | 0.00 | 2.253 | 17.30 | 8.40 | 9.4 | 90.6 | 0.0 | -3.06 | 1.28 | 0.24 | 0.60 | 1.31 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2024-03-10 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.002 | 0.76 | 0.0 | 0.05 | 15.78 | 0.01 | 2.246 | 8.71 | 5.00 | 12.8 | 87.2 | 0.0 | -1.24 | 1.17 | 0.25 | 0.69 | 2.46 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2024-03-10 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 17.11 | 0.00 | 2.273 | 4.67 | 8.76 | 4.1 | 95.9 | 0.0 | -1.52 | 0.41 | 0.26 | 0.79 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FVG | 29486 | 2024-03-25 | 2023-01-18 | 3.1 | 2.34 | 3.16 | 3.2 | 0.004 | 0.66 | 0.0 | 0.05 | 14.20 | 0.00 | 2.106 | 8.55 | 0.00 | 5.7 | 94.3 | 0.0 | -0.63 | 0.26 | 0.75 | 2.01 | 3.1 | 0.019 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.109 | 8.32 | 3.97 | 7.5 | 92.5 | 0.0 | -0.66 | 1.36 | 0.26 | 0.78 | 2.16 | 48009 | 6409 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2024-03-16 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 22.52 | 0.01 | 2.142 | 5.99 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.002 | 0.58 | 0.0 | 0.03 | 22.28 | 0.00 | 2.117 | 10.75 | 2.20 | 3.2 | 96.8 | 0.0 | -0.85 | 0.68 | 0.26 | 0.76 | 1.88 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 6iAC | 4435 | 2024-03-11 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.003 | 0.86 | 0.0 | 0.05 | 16.10 | 0.00 | 2.189 | 11.74 | 5.26 | 7.8 | 92.2 | 0.0 | -0.28 | 0.91 | 0.26 | 0.76 | 1.16 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |