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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BC5 | 12139 | 2023-08-09 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.04 | 0.00 | 2.243 | 14.42 | 0.76 | 7.5 | 92.5 | 0.0 | -2.75 | 1.30 | 0.23 | 0.58 | 0.92 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-08-11 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B6Z | 15893 | 2023-08-09 | 2022-09-27 | 2.9 | 3.26 | 3.37 | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 10.48 | 0.00 | 2.286 | 0.59 | 0.27 | 1.4 | 98.6 | 0.0 | -0.69 | 0.20 | 0.56 | 1.62 | 2.8 | 0.003 | 0.67 | 0.0 | 0.05 | 14.28 | 0.01 | 2.187 | 8.14 | 0.27 | 3.6 | 96.4 | 0.0 | 0.04 | 1.46 | 0.23 | 0.76 | 2.02 | 3581 | 442 | 2 | 8 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-08-09 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 3JAU | 6366 | 2023-08-12 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2023-08-09 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2023-08-09 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.002 | 0.72 | 0.0 | 0.04 | 15.66 | 0.01 | 2.252 | 10.89 | 0.00 | 9.3 | 90.7 | 0.0 | -1.34 | 1.18 | 0.24 | 0.69 | 2.46 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RED | 4850 | 2023-08-22 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.83 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.004 | 0.80 | 0.0 | 0.05 | 15.95 | 0.00 | 1.867 | 19.50 | 2.41 | 5.4 | 94.5 | 0.1 | -0.98 | 1.03 | 0.25 | 0.16 | 0.28 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6VHL | 21207 | 2023-08-09 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 16.24 | 0.00 | 2.321 | 8.71 | 0.00 | 8.7 | 91.3 | 0.0 | -3.58 | 2.81 | 0.26 | 0.69 | 3.41 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2023-08-22 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.40 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.004 | 0.83 | 0.0 | 0.05 | 14.03 | 0.01 | 1.829 | 21.34 | 0.06 | 6.8 | 93.0 | 0.1 | -1.87 | 1.53 | 0.26 | 0.19 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6iAC | 4435 | 2023-08-10 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.004 | 0.91 | 0.0 | 0.05 | 16.30 | 0.00 | 2.076 | 13.77 | 0.86 | 8.4 | 91.6 | 0.0 | -0.67 | 1.03 | 0.26 | 0.76 | 1.34 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FVG | 29486 | 2023-08-26 | 2023-01-18 | 3.1 | 2.34 | 3.16 | 3.2 | 0.004 | 0.66 | 0.0 | 0.05 | 14.20 | 0.00 | 2.106 | 8.55 | 0.00 | 5.7 | 94.3 | 0.0 | -0.63 | 0.26 | 0.75 | 2.01 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 16.10 | 0.00 | 2.149 | 7.20 | 0.22 | 6.9 | 93.1 | 0.0 | -0.45 | 1.38 | 0.26 | 0.78 | 2.09 | 48009 | 6409 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2023-08-13 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 5.99 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.60 | 0.0 | 0.03 | 16.58 | 0.00 | 2.112 | 10.83 | 0.70 | 3.9 | 96.1 | 0.0 | -1.17 | 0.66 | 0.26 | 0.77 | 1.97 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 5MPD | 3534 | 2023-08-25 | 2016-12-16 | 4.1 | 4.14 | — | 4.1 | 0.035 | 3.40 | 330.0 | 0.20 | 17.76 | 0.03 | 0.656 | 3.82 | 2.78 | 5.6 | 92.3 | 2.1 | -2.14 | 0.21 | 0.37 | — | 4.1 | 0.004 | 0.81 | 0.0 | 0.04 | 15.26 | 0.00 | 2.095 | 17.29 | 0.00 | 6.2 | 93.6 | 0.2 | -0.71 | 1.92 | 0.27 | 0.60 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oG6 | 12879 | 2023-08-09 | 2021-05-06 | 3.3 | 3.47 | — | 2.9 | 0.008 | 0.82 | 0.0 | 0.04 | 17.33 | 0.01 | 2.325 | 7.36 | 6.10 | 9.6 | 90.4 | 0.0 | -4.47 | 0.28 | 0.82 | 2.77 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.45 | 0.00 | 2.215 | 10.56 | 0.00 | 6.6 | 93.4 | 0.0 | -0.32 | 0.52 | 0.27 | 0.84 | 3.03 | 1602 | 199 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-08-09 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 8A06 | 15051 | 2023-08-09 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.25 | 0.00 | 2.290 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -1.23 | 0.40 | 0.27 | 0.80 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2023-08-09 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.69 | 0.0 | 0.04 | 17.79 | 0.00 | 2.197 | 7.98 | 0.29 | 3.2 | 96.8 | 0.0 | 1.27 | 0.82 | 0.27 | 0.79 | 2.52 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2023-08-21 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 16.91 | 0.00 | 1.971 | 14.51 | 0.26 | 8.9 | 91.0 | 0.1 | -1.55 | 2.04 | 0.27 | 0.21 | 0.19 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-08-13 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.4 | 0.006 | 1.28 | 0.0 | 0.06 | 15.37 | 0.01 | 1.912 | 43.78 | 0.00 | 8.2 | 91.8 | 0.0 | -2.70 | 3.88 | 0.27 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |