Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BC5	12139	2023-08-09	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	7FG3	31577	2023-08-11	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	8B6Z	15893	2023-08-09	2022-09-27	2.9	3.26	3.37	2.8	0.002	0.51	0.0	0.04	10.48	0.00	2.286	0.59	0.27	1.4	98.6	0.0	-0.69	0.20	0.56	1.62	2.8	0.003	0.67	0.0	0.05	14.28	0.01	2.187	8.14	0.27	3.6	96.4	0.0	0.04	1.46	0.23	0.76	2.02	3581	442	2	8	0	0	0	logfile
✔	6FU8	4319	2023-08-09	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	3JAU	6366	2023-08-12	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	3JC2	3245	2023-08-09	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✔	7KU5	23034	2023-08-09	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.72	0.0	0.04	15.66	0.01	2.252	10.89	0.00	9.3	90.7	0.0	-1.34	1.18	0.24	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	6RED	4850	2023-08-22	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.004	0.80	0.0	0.05	15.95	0.00	1.867	19.50	2.41	5.4	94.5	0.1	-0.98	1.03	0.25	0.16	0.28	33899	4503	25	0	10	0	0	logfile
✔	6VHL	21207	2023-08-09	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.003	0.76	0.0	0.04	16.24	0.00	2.321	8.71	0.00	8.7	91.3	0.0	-3.58	2.81	0.26	0.69	3.41	1190	158	4	0	0	0	0	logfile
✔	6REU	4857	2023-08-22	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.004	0.83	0.0	0.05	14.03	0.01	1.829	21.34	0.06	6.8	93.0	0.1	-1.87	1.53	0.26	0.19	—	33899	4503	25	0	10	0	0	logfile
✔	6iAC	4435	2023-08-10	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.91	0.0	0.05	16.30	0.00	2.076	13.77	0.86	8.4	91.6	0.0	-0.67	1.03	0.26	0.76	1.34	8210	1057	11	0	0	0	0	logfile
✔	8FVG	29486	2023-08-26	2023-01-18	3.1	2.34	3.16	3.2	0.004	0.66	0.0	0.05	14.20	0.00	2.106	8.55	0.00	5.7	94.3	0.0	-0.63	0.26	0.75	2.01	3.1	0.003	0.61	0.0	0.04	16.10	0.00	2.149	7.20	0.22	6.9	93.1	0.0	-0.45	1.38	0.26	0.78	2.09	48009	6409	13	0	0	0	0	logfile
✔	6SXo	10344	2023-08-13	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.60	0.0	0.03	16.58	0.00	2.112	10.83	0.70	3.9	96.1	0.0	-1.17	0.66	0.26	0.77	1.97	14894	973	8	326	0	0	0	logfile
✔	5MPD	3534	2023-08-25	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.82	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.81	0.0	0.04	15.26	0.00	2.095	17.29	0.00	6.2	93.6	0.2	-0.71	1.92	0.27	0.60	—	40974	5142	13	0	0	0	0	logfile
✔	7oG6	12879	2023-08-09	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.60	0.0	0.04	16.45	0.00	2.215	10.56	0.00	6.6	93.4	0.0	-0.32	0.52	0.27	0.84	3.03	1602	199	2	5	0	0	0	logfile
✔	6RJU	4906	2023-08-09	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	8A06	15051	2023-08-09	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✔	6X0U	21984	2023-08-09	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	6FLQ	4275	2023-08-21	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.003	0.76	0.0	0.04	16.91	0.00	1.971	14.51	0.26	8.9	91.0	0.1	-1.55	2.04	0.27	0.21	0.19	30201	3868	10	91	3	0	0	logfile
✔	5L08	8300	2023-08-13	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.4	0.006	1.28	0.0	0.06	15.37	0.01	1.912	43.78	0.00	8.2	91.8	0.0	-2.70	3.88	0.27	0.71	—	13617	1629	9	0	0	0	0	logfile

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