Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7USM	26739	2023-08-12	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.76	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.003	0.69	0.0	0.04	16.30	0.00	2.109	9.21	1.75	3.8	96.2	0.0	-0.43	0.48	0.73	0.72	2.18	11893	1521	5	0	15	0	0	logfile
✔	7UX1	26845	2023-08-20	2022-05-04	3.48	2.70	3.65	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.003	0.60	0.0	0.04	13.17	0.00	1.924	7.64	0.57	3.7	96.3	0.0	2.02	0.45	0.77	0.76	1.70	28931	4991	7	0	0	0	0	logfile
✔	7UAF	26423	2023-08-15	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.82	13.0	0.10	13.98	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.004	0.64	0.0	0.04	17.33	0.00	1.873	6.71	2.11	3.7	96.3	0.0	-0.06	1.19	0.83	0.83	4.25	17864	2131	22	0	58	0	0	logfile
✔	8CPM	16783	2023-08-23	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	1.6	0.003	0.60	0.0	0.04	16.38	0.00	2.043	7.22	0.11	2.3	97.7	0.0	4.30	0.37	0.71	0.77	7.46	36090	4152	72	0	38	1972	0	logfile
✔	7S8L	24896	2023-08-10	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	3KTT	5148	2023-08-09	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.6	0.005	1.21	0.0	0.05	17.07	0.01	2.016	34.63	0.49	11.5	87.3	1.2	-2.51	2.08	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7oUF	13075	2023-08-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.56	0.0	0.04	17.36	0.00	1.686	6.25	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.84	0.01	1.946	10.18	1.99	2.3	97.7	0.0	0.00	1.74	0.79	0.80	2.77	15094	1664	16	80	10	12	0	logfile
✔	7XJG	33226	2023-08-13	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile
✔	7FiJ	31599	2023-08-09	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	8BPA	16147	2023-08-11	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.80	0.0	0.04	18.78	0.01	2.140	16.42	0.53	4.4	95.6	0.0	0.14	1.61	0.69	0.66	1.15	10393	1280	6	0	7	0	0	logfile
✔	7SiL	25143	2023-08-12	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.66	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.58	0.0	0.04	16.10	0.00	2.167	8.36	1.77	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.87	12924	1564	8	0	34	0	0	logfile
✔	7o6E	12738	2023-08-23	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7SiM	25144	2023-08-12	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	7M4U	23666	2023-08-09	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	8D33	27154	2023-08-14	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.00	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.004	0.66	0.0	0.04	18.13	0.00	2.158	7.95	3.49	3.9	96.0	0.1	0.37	1.33	0.73	0.79	3.25	15272	1784	6	46	2	0	0	logfile
✔	8CAM	16530	2023-08-21	2023-01-24	1.86	1.57	1.83	1.7	0.010	1.53	0.0	0.11	14.23	0.03	1.821	0.54	0.27	3.0	96.8	0.1	-1.28	0.64	0.76	6.57	1.6	0.005	0.88	0.0	0.05	14.56	0.01	1.757	7.16	1.42	2.3	97.6	0.0	0.01	0.34	0.73	0.82	6.32	86648	2767	65	2724	322	6113	0	logfile
✔	8oMA	16972	2023-08-12	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.78	0.0	0.04	19.82	0.00	1.907	24.91	0.42	6.7	93.3	0.0	-0.58	1.94	0.63	0.60	0.62	11379	1337	6	34	3	0	0	logfile
✔	8oM9	16971	2023-08-13	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.80	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.6	0.004	0.72	0.0	0.04	19.00	0.00	1.822	19.87	0.65	5.7	94.3	0.1	-0.75	0.53	0.67	0.66	0.65	13314	1548	6	44	4	0	0	logfile
✔	7YLA	33904	2023-08-16	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.007	0.66	0.0	0.04	15.01	0.01	1.842	11.07	1.04	4.6	95.3	0.1	-0.79	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	7KBB	22788	2023-08-10	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile

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