Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PT7	13620	2023-11-16	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.003	0.57	0.0	0.04	15.85	0.00	0.924	10.95	0.25	3.0	97.0	0.0	0.73	0.31	0.77	0.82	1.43	67420	8451	29	0	50	0	0	logfile
✔	7T22	25609	2023-11-18	2021-12-02	4.2	4.73	—	4.4	0.004	1.41	0.0	0.04	10.32	0.00	1.992	5.52	1.18	1.5	98.5	0.0	2.51	0.83	0.75	—	4.4	0.004	1.08	0.0	0.04	12.24	0.00	0.943	23.53	0.00	3.4	96.6	0.0	0.80	0.90	0.85	0.79	—	24536	3084	15	13	15	0	0	logfile
✔	7Qo1	14080	2023-11-16	2021-12-23	4.4	3.65	4.44	3.5	0.012	1.85	2.0	0.09	18.35	0.02	2.337	2.24	1.51	5.3	94.6	0.2	-1.82	0.79	0.60	—	3.5	0.004	0.75	0.0	0.04	17.82	0.00	0.949	16.06	0.00	5.5	94.5	0.0	-1.00	0.67	0.80	0.61	—	14179	1694	9	62	1	0	0	logfile
✔	6i0Y	0322	2023-11-21	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.008	0.95	0.0	0.05	16.40	0.01	0.954	26.63	1.60	14.9	83.3	1.9	-2.98	1.62	0.61	0.74	0.68	93619	3551	48	3049	144	439	0	logfile
✔	5LMo	4074	2023-11-13	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.80	0.0	0.04	16.93	0.01	0.957	39.06	0.00	9.6	89.9	0.5	-1.93	2.18	0.88	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	8A1T	15088	2023-11-20	2022-06-02	3.37	2.93	3.53	3.1	0.004	0.52	0.0	0.04	15.83	0.00	2.002	4.51	0.00	2.2	97.8	0.0	1.51	0.58	0.77	2.16	3.2	0.003	0.53	0.0	0.04	16.44	0.00	0.962	8.76	0.00	3.5	96.5	0.0	0.65	0.50	0.59	0.78	1.83	29507	1889	11	0	14	0	14626	logfile
✔	7UiM	26549	2023-11-16	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	18.46	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.007	0.90	0.0	0.05	19.82	0.01	0.973	40.32	0.88	7.3	92.4	0.3	-1.39	2.98	0.80	0.77	0.57	14772	387	3	541	15	0	0	logfile
✔	8H77	34519	2023-11-16	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.60	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.16	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile
✔	5GAF	8002	2023-11-21	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.87	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.73	0.0	0.04	15.26	0.01	0.984	21.89	0.03	5.5	94.3	0.1	-1.30	1.41	0.71	0.85	—	96182	3889	47	3049	452	0	0	logfile
✔	6TZ1	20586	2023-11-16	2019-08-09	3.4	3.44	—	3.4	0.008	0.92	0.0	0.05	10.34	0.01	2.207	4.35	0.47	5.1	94.9	0.0	-3.92	0.54	0.85	3.95	3.4	0.004	0.61	0.0	0.04	14.56	0.00	0.990	6.95	0.54	4.2	95.8	0.0	-0.48	1.24	0.53	0.88	3.22	14212	1709	5	23	1	0	0	logfile
✔	7NSH	12567	2023-11-14	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.004	0.59	0.0	0.04	17.00	0.00	0.997	8.56	0.42	4.6	95.4	0.0	0.63	1.22	0.79	0.90	2.61	112448	9643	79	1611	229	2	0	logfile
✔	7TRG	26089	2023-11-21	2022-01-28	3.0	3.44	—	3.3	0.005	0.68	1.0	0.04	15.52	0.00	1.932	4.57	0.19	3.8	96.2	0.0	1.26	0.64	0.86	2.32	3.3	0.004	0.63	0.0	0.04	16.31	0.00	1.010	4.53	1.26	4.0	96.0	0.0	0.81	1.14	0.63	0.87	2.05	33714	4377	25	0	24	8	0	logfile
✔	5GAG	8003	2023-11-21	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.16	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.005	0.65	0.0	0.04	15.28	0.01	1.012	15.42	0.69	3.7	96.2	0.1	-0.65	0.68	0.78	0.88	2.04	94030	3598	46	3049	473	0	0	logfile
✔	7Y41	33599	2023-11-21	2022-06-13	4.1	4.02	3.07	3.4	0.004	0.63	0.0	0.03	16.59	0.01	1.204	15.20	0.00	4.4	95.6	0.0	-0.39	0.87	0.86	—	3.4	0.005	0.65	0.0	0.04	16.35	0.01	1.024	15.19	0.00	5.1	94.9	0.0	-0.58	1.48	0.88	0.87	—	97056	3529	46	3237	411	0	0	logfile
✔	6ZXF	11519	2023-11-19	2020-07-29	3.7	3.68	3.69	3.5	0.010	0.98	0.0	0.05	16.80	0.01	1.937	8.48	0.65	8.5	91.5	0.0	-3.70	0.87	0.81	1.63	3.4	0.005	0.69	0.0	0.04	17.00	0.00	1.027	16.14	0.78	6.2	93.8	0.0	-1.09	0.57	0.87	0.82	1.53	80133	5758	41	1656	6	0	0	logfile
✔	7o5H	12736	2023-11-21	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.009	0.81	0.0	0.05	15.02	0.01	1.028	14.99	0.84	5.1	94.9	0.0	-0.32	1.49	0.87	0.86	1.38	34436	1730	22	964	167	0	0	logfile
✔	8E5L	27914	2023-11-17	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	5T62	8362	2023-11-18	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.88	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.005	0.70	0.0	0.04	16.38	0.01	1.047	5.65	0.62	7.2	92.1	0.6	-1.52	0.70	0.80	0.87	2.54	131766	7061	57	3483	438	6	0	logfile
✔	6VQT	21356	2023-11-14	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.003	0.74	0.0	0.04	16.60	0.00	1.052	9.77	0.32	3.0	97.0	0.0	2.30	1.06	0.77	0.84	1.48	9144	1168	4	0	6	0	0	logfile
✔	5XYM	6789	2023-11-20	2017-07-09	3.08	3.42	—	3.4	0.006	1.01	7.0	0.10	16.02	0.00	1.297	4.08	2.56	7.8	89.6	2.5	-3.59	0.66	0.78	3.19	3.4	0.005	0.69	0.0	0.04	15.72	0.01	1.052	7.86	0.71	8.7	90.1	1.2	-1.94	1.41	0.75	0.85	2.53	84069	3122	32	2781	146	0	0	logfile

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