Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S8F	10120	2022-07-06	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.74	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.94	54.0	0.11	17.89	0.02	1.493	187.11	4.56	53.2	44.4	2.4	-7.94	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	6BWi	7299	2022-07-05	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.08	0.01	1.745	22.63	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	120.0	0.27	21.86	0.03	1.602	113.20	4.82	45.7	47.7	6.6	-8.68	2.59	0.80	0.86	1.64	23491	2484	8	0	813	0	0	logfile
✔	7K0S	22615	2022-07-04	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.93	0.00	2.069	9.77	0.95	7.8	92.0	0.2	-0.08	0.80	0.73	—	4.6	0.043	3.18	229.0	0.13	17.11	0.02	1.367	135.81	0.02	44.3	52.3	3.4	-7.54	2.27	0.84	0.82	—	116057	12911	8	0	3558	0	0	logfile
✔	7LQi	23487	2022-07-03	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✔	7TDH	25829	2022-07-04	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.69	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.64	75.0	0.11	19.60	0.02	0.880	152.93	3.43	43.5	54.9	1.6	-7.27	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7K0T	22616	2022-07-04	2020-09-05	4.3	4.52	4.28	4.2	0.003	0.64	1.0	0.04	13.78	0.00	2.133	7.56	0.59	7.4	92.4	0.2	-0.12	0.84	0.76	—	4.2	0.036	2.69	55.0	0.11	15.79	0.02	1.291	109.78	0.00	43.2	55.3	1.6	-7.41	1.92	0.86	0.83	—	115288	12743	8	0	3608	0	0	logfile
✔	3J9L	2871	2022-07-03	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.044	3.04	47.0	0.12	19.31	0.02	1.806	99.15	3.02	41.1	57.3	1.6	-7.66	2.86	0.73	0.82	—	112951	8688	31	0	8320	0	0	logfile
✔	7TDK	25832	2022-07-04	2021-12-31	3.8	4.07	3.86	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	5.03	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	82.0	0.14	20.00	0.02	0.886	99.70	3.23	38.3	59.1	2.6	-7.46	2.33	0.89	0.86	1.21	117136	12936	8	0	3616	0	0	logfile
✔	7TDG	25828	2022-07-04	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.90	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	102.0	0.16	19.76	0.02	1.710	89.18	3.23	38.5	59.3	2.2	-7.41	1.96	0.86	0.86	1.29	117345	12936	8	0	3624	0	0	logfile
✔	6oDY	20024	2022-07-05	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.40	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.16	0.02	1.727	102.93	4.00	38.1	60.5	1.3	-7.21	1.53	0.69	0.69	1.76	28116	2832	6	0	1326	0	0	logfile
✔	7LQH	23486	2022-07-03	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.26	186.0	0.31	24.05	0.02	1.786	114.19	5.21	39.1	60.6	0.3	-8.00	3.50	0.66	0.87	3.22	12096	1152	144	0	0	0	0	logfile
✔	7TDi	25830	2022-07-04	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.28	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	155.0	0.17	19.81	0.02	1.662	79.02	3.11	34.2	63.4	2.4	-7.10	1.45	0.89	0.87	1.77	117132	12936	8	0	3616	0	0	logfile
✔	7LQG	23485	2022-07-03	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.110	4.34	179.0	0.30	23.65	0.02	1.811	119.39	4.40	35.9	64.1	0.0	-7.99	1.64	0.67	0.86	3.88	12096	1152	144	0	0	0	0	logfile
✔	7L7H	23212	2022-07-02	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.005	0.99	0.0	0.06	16.55	0.00	2.113	18.49	1.96	32.1	67.9	0.0	-4.69	0.91	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	5LiJ	4054	2022-07-02	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.61	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.82	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	3JAC	6343	2022-07-04	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.52	0.01	1.934	77.83	0.00	26.2	72.4	1.4	-5.34	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	7JSH	22454	2022-07-03	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	3J2P	5499	2022-07-03	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.70	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.82	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	6o9J	0661	2022-07-07	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.38	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.11	13.0	0.05	16.81	0.01	1.333	31.28	0.41	22.8	74.1	3.1	-4.79	1.05	0.78	0.74	0.63	142682	5731	53	4564	0	0	0	logfile
✔	6TNG	10532	2022-07-03	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile

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