Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oDY	20024	2021-09-05	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.14	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.08	5.0	0.14	20.13	0.02	1.748	100.61	3.40	38.6	60.0	1.4	-7.29	1.55	0.70	0.69	1.92	28116	2832	6	0	1326	0	0	logfile
✔	7LQH	23486	2021-09-03	2021-02-13	3.4	3.12	—	3.4	0.008	0.86	0.0	0.05	20.97	0.00	1.410	30.96	14.58	0.0	100.0	0.0	-5.94	0.60	0.81	5.83	3.2	0.109	4.56	287.0	0.29	24.62	0.02	1.697	108.28	5.21	38.7	60.9	0.3	-7.88	1.64	0.67	0.87	3.17	12240	1152	144	0	0	0	0	logfile
✔	7LQG	23485	2021-09-03	2021-02-13	3.4	3.13	—	3.3	0.008	0.86	0.0	0.05	20.97	0.00	1.410	30.83	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.108	4.62	293.0	0.29	24.24	0.02	1.744	115.29	4.05	36.1	63.9	0.0	-7.93	1.61	0.68	0.87	3.90	12240	1152	144	0	0	0	0	logfile
✔	7JSH	22454	2021-09-02	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.89	0.01	1.900	42.53	0.00	35.4	64.4	0.2	-5.88	8.07	0.79	0.73	—	7916	1904	8	15	0	0	0	logfile
✔	6XTB	10618	2021-09-02	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.006	1.33	0.0	0.05	10.83	0.01	2.037	19.23	0.00	34.6	65.4	0.0	-6.29	3.26	0.35	0.66	—	1161	235	1	0	0	0	0	logfile
✔	5LiJ	4054	2021-09-02	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	22.98	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.11	0.0	0.04	9.65	0.00	2.219	12.48	0.00	30.7	69.3	0.0	-5.42	1.52	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7DA4	30622	2021-09-02	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	77.78	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	7.1	0.004	1.01	0.0	0.04	12.09	0.00	2.235	22.22	0.00	30.0	70.0	0.0	-6.55	3.69	0.42	0.65	—	507	66	3	0	0	0	0	logfile
✔	6oSM	20186	2021-09-02	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.22	0.0	0.07	15.32	0.00	2.228	25.45	1.46	28.3	71.7	0.0	-5.24	3.40	0.45	0.75	2.88	4100	600	10	0	0	0	0	logfile
✔	3JAC	6343	2021-09-03	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.07	13.90	0.01	1.928	75.14	0.00	24.3	74.3	1.4	-4.87	3.68	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	6TNG	10532	2021-09-02	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.01	0.0	0.00	7.45	0.01	2.147	16.73	0.00	25.4	74.4	0.1	-3.94	0.38	0.76	0.73	—	8240	2060	2	0	0	0	0	logfile
✔	6o9J	0661	2021-09-07	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.06	7.0	0.05	16.83	0.01	1.360	30.65	0.49	22.0	75.1	2.9	-4.65	1.22	0.79	0.75	0.47	142682	5731	53	4564	0	0	0	logfile
✔	3LoS	5137	2021-09-03	2010-02-04	4.3	2.98	—	3.0	0.008	2.45	224.0	0.19	19.87	0.01	2.259	86.73	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.005	1.23	0.0	0.05	15.67	0.01	2.130	27.58	0.01	21.0	75.3	3.7	-4.16	1.43	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	5G2X	3331	2021-09-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.07	0.0	0.05	20.99	0.01	1.908	50.51	1.13	22.9	75.6	1.5	-4.95	2.49	0.80	0.67	0.91	19072	487	3	704	0	0	0	logfile
✔	5HX2	8064	2021-09-03	2016-01-29	3.8	3.23	—	3.8	0.007	1.19	12.0	0.06	10.99	0.01	0.951	39.77	0.75	19.6	76.9	3.6	-5.39	0.65	0.66	2.67	3.7	0.009	1.17	4.0	0.05	14.80	0.01	1.704	23.70	0.21	21.6	75.8	2.6	-4.38	0.74	0.71	0.80	2.00	171672	25134	54	0	0	0	0	logfile
✔	5iPK	8100	2021-09-16	2016-03-09	3.7	3.79	—	3.7	0.011	1.35	0.0	0.06	11.53	0.01	2.067	31.05	0.45	21.6	75.8	2.6	-4.98	0.77	0.76	2.94	3.7	0.005	1.11	0.0	0.05	16.26	0.01	2.032	22.41	0.57	22.1	75.8	2.1	-4.64	0.82	0.77	0.83	2.48	240540	30000	60	0	0	0	0	logfile
✔	6B19	7031	2021-09-02	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	15.00	0.00	19.4	80.5	0.1	-5.73	0.74	0.64	—	4.4	0.003	0.79	0.0	0.04	12.84	0.00	1.957	25.92	0.00	24.1	75.9	0.0	-4.78	2.19	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✔	6RiB	4887	2021-09-03	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.011	1.29	0.0	0.06	14.63	0.01	2.071	31.15	0.00	23.5	76.5	0.0	-5.95	1.65	0.78	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6NYL	0545	2021-09-04	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.29	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.2	0.007	0.89	0.0	0.05	13.04	0.00	2.117	29.58	0.42	23.2	76.8	0.0	-4.89	0.57	0.87	0.74	1.98	68664	9000	12	0	0	0	0	logfile
✔	3J2P	5499	2021-09-03	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.90	0.0	0.04	17.89	0.01	1.985	71.72	1.05	19.7	76.9	3.4	-4.28	0.96	0.38	0.72	0.92	9890	1134	6	0	6	0	1086	logfile
✔	5YYS	6859	2021-09-04	2017-12-11	4.2	4.57	—	4.1	0.016	2.28	0.0	0.10	15.30	0.01	2.201	22.17	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.016	1.69	4.0	0.06	12.92	0.01	1.940	36.60	0.00	22.6	76.9	0.5	-3.77	1.75	0.83	0.66	—	24044	3244	4	0	0	0	0	logfile

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