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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8AVB | 15677 | 2024-03-17 | 2022-08-26 | 4.43 | 5.51 | 4.88 | 4.3 | 0.005 | 0.81 | 1.0 | 0.05 | 11.64 | 0.01 | 2.142 | 17.52 | 0.00 | 4.4 | 95.4 | 0.2 | -0.47 | 0.81 | 0.63 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.05 | 12.46 | 0.01 | 2.015 | 36.18 | 0.00 | 7.1 | 92.9 | 0.0 | -1.38 | 1.64 | 0.82 | 0.68 | — | 10591 | 1326 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKH | 25969 | 2024-03-18 | 2022-01-17 | 4.4 | 7.29 | 4.45 | 4.2 | 0.019 | 2.19 | 0.0 | 0.00 | 6.81 | 0.01 | 2.385 | 0.08 | 0.00 | 3.9 | 94.7 | 1.4 | -0.35 | 0.59 | 0.62 | — | 4.2 | 0.018 | 1.32 | 0.0 | 0.00 | 7.42 | 0.01 | 1.974 | 32.32 | 0.00 | 15.1 | 84.5 | 0.3 | -2.28 | 1.70 | 0.83 | 0.84 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TJZ | 25947 | 2024-03-18 | 2022-01-17 | 4.4 | 7.00 | 4.54 | 4.2 | 0.019 | 2.21 | 0.0 | 0.00 | 6.67 | 0.01 | 2.384 | 0.19 | 0.00 | 4.2 | 94.2 | 1.6 | -0.41 | 0.58 | 0.63 | — | 4.2 | 0.017 | 1.19 | 0.0 | 0.00 | 6.51 | 0.01 | 2.047 | 16.64 | 0.00 | 13.2 | 86.4 | 0.3 | -1.19 | 0.80 | 0.82 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TK8 | 25960 | 2024-03-18 | 2022-01-17 | 4.7 | 7.79 | 12.86 | 4.4 | 0.019 | 2.21 | 0.0 | 0.00 | 6.68 | 0.01 | 2.390 | 0.08 | 0.00 | 4.1 | 94.4 | 1.5 | -0.46 | 0.60 | 0.62 | — | 4.4 | 0.007 | 1.06 | 0.0 | 0.00 | 6.46 | 0.01 | 1.965 | 24.73 | 0.00 | 11.5 | 88.2 | 0.3 | -0.96 | 1.58 | 0.81 | 0.81 | — | 20227 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKM | 25974 | 2024-03-18 | 2022-01-17 | 4.5 | 7.58 | 4.88 | 4.3 | 0.019 | 2.22 | 0.0 | 0.00 | 6.78 | 0.01 | 2.385 | 0.12 | 0.00 | 4.3 | 94.2 | 1.5 | -0.44 | 0.59 | 0.59 | — | 4.3 | 0.004 | 0.82 | 0.0 | 0.00 | 5.62 | 0.00 | 2.105 | 12.83 | 0.00 | 9.6 | 90.0 | 0.3 | -0.78 | 1.55 | 0.82 | 0.81 | — | 20227 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2024-03-12 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.88 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 57.0 | 0.11 | 15.92 | 0.02 | 0.366 | 109.75 | 0.00 | 43.4 | 55.0 | 1.6 | -7.46 | 2.20 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7ZQS | 14874 | 2024-03-15 | 2022-05-02 | 2.54 | 3.28 | 2.59 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 18.00 | 0.00 | 2.257 | 5.71 | 0.00 | 2.4 | 97.6 | 0.0 | 1.32 | 0.88 | 0.91 | 5.01 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 18.37 | 0.00 | 2.170 | 5.71 | 0.00 | 2.2 | 97.8 | 0.0 | 1.97 | 0.22 | 0.86 | 0.90 | 4.34 | 11354 | 1278 | 12 | 60 | 14 | 0 | 0 | logfile |
✔ | 7YG9 | 33812 | 2024-03-11 | 2022-07-11 | 2.68 | 3.47 | 2.76 | 2.8 | 0.005 | 0.51 | 0.0 | 0.03 | 24.67 | 0.00 | 1.804 | 13.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.86 | 0.81 | — | 2.8 | 0.006 | 0.62 | 0.0 | 0.04 | 24.38 | 0.00 | 1.873 | 17.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.39 | 0.92 | 0.92 | — | 8630 | 0 | 3 | 404 | 8 | 0 | 0 | logfile |
✔ | 5X5F | 6707 | 2024-03-20 | 2017-02-15 | 4.2 | 4.29 | — | 4.2 | 0.011 | 1.70 | 6.0 | 0.08 | 14.74 | 0.01 | 1.433 | 32.76 | 5.99 | 13.0 | 85.5 | 1.4 | -3.79 | 0.66 | 0.57 | — | 4.2 | 0.004 | 0.98 | 0.0 | 0.05 | 12.79 | 0.01 | 2.099 | 20.81 | 0.00 | 13.2 | 86.5 | 0.3 | -2.21 | 1.06 | 0.72 | 0.70 | — | 26422 | 3423 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RU6 | 24698 | 2024-03-10 | 2021-08-16 | 4.4 | 4.33 | 3.79 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.25 | 0.00 | 2.027 | 10.32 | 0.00 | 0.3 | 99.7 | 0.0 | 3.15 | 0.71 | 0.67 | — | 4.2 | 0.003 | 0.52 | 0.0 | 0.03 | 12.86 | 0.00 | 2.107 | 6.63 | 0.00 | 1.6 | 98.4 | 0.0 | 3.90 | 0.73 | 0.74 | 0.70 | — | 5426 | 331 | 2 | 0 | 0 | 0 | 2725 | logfile |
✔ | 6JNX | 9852 | 2024-03-22 | 2019-03-18 | 4.08 | 4.16 | — | 4.1 | 0.012 | 1.23 | 0.0 | 0.06 | 16.71 | 0.01 | 1.858 | 11.37 | 0.90 | 7.7 | 92.0 | 0.3 | -3.99 | 0.61 | 0.68 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 17.10 | 0.00 | 2.009 | 10.55 | 0.00 | 5.9 | 94.1 | 0.1 | -0.85 | 1.61 | 0.70 | 0.79 | — | 32639 | 3771 | 12 | 144 | 3 | 0 | 0 | logfile |
✔ | 6ZQF | 11362 | 2024-03-18 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 22.52 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.88 | 0.0 | 0.05 | 22.83 | 0.00 | 1.964 | 18.98 | 0.00 | 12.3 | 87.5 | 0.3 | -2.18 | 1.48 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✔ | 6RVY | 10018 | 2024-03-14 | 2019-06-03 | 4.13 | 4.25 | 4.04 | 4.1 | 0.006 | 1.03 | 0.0 | 0.06 | 14.69 | 0.01 | 2.290 | 6.87 | 0.49 | 7.5 | 92.5 | 0.0 | -5.00 | 0.64 | 0.81 | — | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 13.31 | 0.00 | 2.315 | 11.22 | 0.00 | 4.8 | 95.2 | 0.0 | -0.06 | 0.69 | 0.64 | 0.81 | — | 9627 | 1290 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2024-03-15 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 24.66 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.69 | 0.0 | 0.04 | 25.95 | 0.01 | 1.746 | 31.76 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.93 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7YCi | 33740 | 2024-03-11 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 24.35 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 24.57 | 0.00 | 1.865 | 23.49 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.95 | 0.90 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 5UZ7 | 8623 | 2024-03-11 | 2017-02-24 | 4.1 | 4.03 | — | 4.0 | 0.008 | 1.17 | 0.0 | 0.06 | 11.04 | 0.01 | 2.267 | 7.82 | 0.37 | 4.4 | 95.6 | 0.0 | -2.30 | 0.64 | 0.75 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 13.71 | 0.00 | 2.205 | 15.25 | 0.00 | 5.4 | 94.6 | 0.0 | -0.43 | 1.39 | 0.67 | 0.78 | — | 7643 | 974 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FN4 | 4282 | 2024-03-15 | 2018-02-02 | 4.14 | 4.24 | — | 4.2 | 0.005 | 0.81 | 0.0 | 0.05 | 10.23 | 0.01 | 2.096 | 8.91 | 0.00 | 7.5 | 91.3 | 1.2 | -2.94 | 0.68 | 0.75 | — | 4.2 | 0.002 | 0.66 | 0.0 | 0.04 | 12.41 | 0.00 | 2.186 | 9.89 | 0.00 | 4.3 | 95.6 | 0.1 | 0.24 | 1.64 | 0.71 | 0.76 | — | 12702 | 1626 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XSN | 33428 | 2024-03-11 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 25.09 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.63 | 0.0 | 0.03 | 24.73 | 0.00 | 2.107 | 21.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.26 | 0.92 | 0.88 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 6GTE | 0063 | 2024-03-15 | 2018-06-18 | 4.07 | 3.99 | — | 3.9 | 0.009 | 1.11 | 0.0 | 0.06 | 17.33 | 0.01 | 2.232 | 8.08 | 0.75 | 15.6 | 84.3 | 0.1 | -5.76 | 0.73 | 0.71 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 17.49 | 0.00 | 2.118 | 15.42 | 0.00 | 9.1 | 90.9 | 0.0 | -3.23 | 0.78 | 0.73 | 0.71 | — | 10872 | 1274 | 4 | 67 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2024-03-11 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 23.09 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.9 | 0.009 | 1.12 | 0.0 | 0.08 | 22.54 | 0.01 | 1.891 | 37.73 | 0.00 | 26.1 | 73.8 | 0.1 | -3.90 | 0.98 | 0.79 | 0.68 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |