Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HDD	0204	2023-08-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	6oKT	20104	2023-08-19	2019-04-15	4.2	4.31	—	4.2	0.007	0.96	0.0	0.06	15.35	0.01	2.188	7.94	1.60	11.9	88.1	0.0	-4.31	0.73	0.81	—	4.2	0.002	0.62	0.0	0.04	13.62	0.00	2.123	10.59	0.00	7.9	92.1	0.0	-2.29	0.58	0.73	0.80	—	27048	3451	7	0	0	0	0	logfile
✔	7SQS	25392	2023-08-09	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.004	0.57	0.0	0.04	14.95	0.00	2.243	4.28	0.00	4.6	95.4	0.0	0.93	0.32	0.77	0.86	2.75	4376	560	5	0	0	0	0	logfile
✔	7S9D	24933	2023-08-11	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.63	0.0	0.04	11.92	0.00	2.234	10.40	0.00	7.4	92.3	0.3	-0.77	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7MDi	23773	2023-08-21	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	4.3	0.002	0.59	0.0	0.04	13.04	0.00	1.965	8.19	0.00	9.3	90.7	0.0	-1.47	0.46	0.78	0.81	—	30608	4348	20	0	24	24	0	logfile
✔	7PTL	13630	2023-08-17	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7T20	25607	2023-08-16	2021-12-02	4.7	8.85	—	7.6	0.004	0.63	0.0	0.04	11.19	0.00	2.079	7.50	3.24	2.3	97.6	0.2	0.68	0.91	0.76	—	7.4	0.003	0.61	0.0	0.04	11.70	0.00	1.836	23.54	0.00	3.7	96.2	0.1	1.25	1.62	0.93	0.77	—	21106	2661	11	10	8	0	0	logfile
✔	6oKS	20103	2023-08-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	7T54	25694	2023-08-10	2021-12-11	4.5	7.46	4.54	4.6	0.004	0.70	1.0	0.05	10.84	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.005	0.74	0.0	0.04	11.24	0.00	2.155	18.95	0.00	9.4	90.3	0.3	-0.60	1.60	0.70	0.81	—	8552	1416	4	0	2	0	0	logfile
✔	6o0Z	0585	2023-08-12	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.003	0.54	0.0	0.04	16.60	0.00	2.167	5.01	0.00	6.1	93.9	0.0	0.07	0.31	0.86	0.89	3.20	11912	1288	4	135	0	0	0	logfile
✔	7RYP	24744	2023-08-12	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.6	0.002	0.60	0.0	0.04	12.79	0.00	1.890	10.59	0.00	9.8	90.1	0.1	-0.44	1.01	0.77	0.71	—	11293	725	2	0	0	0	5599	logfile
✔	5A6F	3063	2023-08-11	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	6WBY	21601	2023-08-11	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.28	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.64	0.0	0.05	13.49	0.00	2.197	5.85	0.00	5.0	95.0	0.0	-0.51	0.36	0.77	0.87	2.48	9156	1250	1	0	2	0	0	logfile
✔	6K72	9841	2023-08-22	2019-06-05	4.6	4.68	—	4.6	0.006	1.30	0.0	0.07	12.85	0.01	2.168	10.56	1.37	14.0	85.9	0.1	-5.39	0.74	0.72	—	4.6	0.004	0.88	0.0	0.05	13.31	0.01	2.123	22.61	0.00	13.5	86.5	0.0	-3.49	0.75	0.75	0.73	—	32731	4264	14	0	0	0	0	logfile
✔	8ET6	28586	2023-08-10	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.62	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.004	0.59	0.0	0.03	15.13	0.00	1.948	8.58	0.00	5.5	94.5	0.0	1.04	1.37	0.51	0.72	1.53	8092	532	2	0	2	0	4007	logfile
✔	7FG2	31574	2023-08-11	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	7LH3	23335	2023-08-11	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6DBT	7849	2023-08-16	2018-05-03	4.3	4.48	—	4.3	0.005	0.82	0.0	0.04	24.07	0.01	1.860	21.99	0.12	9.2	90.6	0.2	-4.16	0.85	0.82	—	4.3	0.004	0.72	0.0	0.04	21.59	0.00	1.783	17.48	0.00	7.0	92.9	0.1	-1.04	1.73	0.85	0.84	—	19896	1930	10	222	6	0	0	logfile
✔	6PKW	20368	2023-08-19	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.10	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.003	0.57	0.0	0.04	9.81	0.00	2.240	7.64	0.00	4.9	95.1	0.0	1.63	1.63	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	6VE2	21152	2023-08-21	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.004	0.94	0.0	0.05	7.57	0.00	2.114	14.88	0.00	13.8	86.1	0.1	-3.72	1.19	0.82	0.75	—	30198	6153	21	0	0	0	0	logfile

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