Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JXA	9892	2023-02-21	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	5oYG	3861	2023-02-20	2017-09-08	4.06	4.29	4.02	4.1	0.007	1.27	10.0	0.10	12.53	0.01	2.282	5.95	1.98	6.9	93.1	0.0	-3.35	0.68	0.83	—	4.1	0.004	0.73	0.0	0.04	12.60	0.00	2.130	11.47	0.00	6.0	94.0	0.0	0.56	0.84	0.68	0.82	—	11596	1418	2	0	0	0	0	logfile
✔	7WSo	32762	2023-02-17	2022-01-30	3.03	3.25	—	3.3	0.014	1.29	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.004	0.65	0.0	0.04	14.22	0.00	2.324	4.31	0.00	3.6	96.4	0.0	-0.35	1.27	0.66	0.84	3.03	6204	780	4	0	0	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	6Q0X	20555	2023-02-20	2019-08-02	4.2	4.30	—	4.2	0.007	0.88	0.0	0.05	17.07	0.00	2.139	24.04	1.21	8.1	91.9	0.0	-3.83	0.68	0.72	—	4.2	0.004	0.74	0.0	0.04	15.81	0.00	2.207	18.64	0.00	6.5	93.5	0.0	0.26	1.41	0.67	0.73	—	12468	1492	4	0	0	0	0	logfile
✔	7Q4C	13801	2023-02-19	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.87	0.0	0.05	13.64	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.003	0.60	0.0	0.04	14.84	0.01	2.006	8.11	0.00	2.6	97.4	0.0	1.57	0.91	0.69	0.74	—	9503	585	5	0	11	0	4598	logfile
✔	7o6P	12739	2023-02-18	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	8DW2	27749	2023-02-19	2022-07-30	4.11	4.56	4.33	4.3	0.003	0.80	0.0	0.05	16.97	0.01	2.127	18.20	0.48	6.2	93.7	0.1	-0.94	0.76	0.78	—	4.3	0.003	0.69	0.0	0.05	14.00	0.00	2.128	16.79	0.00	7.3	92.6	0.1	-0.80	1.06	0.77	0.80	—	9364	1223	7	0	3	0	0	logfile
✔	7BTR	30183	2023-02-22	2020-04-02	4.54	4.80	—	4.5	0.007	1.22	0.0	0.06	12.09	0.01	2.037	10.84	0.99	14.4	85.6	0.0	-4.59	0.88	0.78	—	4.5	0.003	0.82	0.0	0.05	12.53	0.00	2.112	18.84	0.00	11.6	88.4	0.0	-2.20	1.69	0.89	0.80	—	16737	2087	6	0	0	0	0	logfile
✔	7T3i	25659	2023-02-25	2021-12-08	4.3	4.36	—	4.3	0.003	0.59	0.0	0.04	12.51	0.00	2.101	11.21	0.07	5.7	94.1	0.2	0.58	0.80	0.82	—	4.3	0.004	0.61	0.0	0.04	13.00	0.00	2.106	12.83	0.00	7.0	92.8	0.2	0.67	1.13	0.80	0.83	—	26799	3437	12	0	36	0	0	logfile
✔	6SoF	10273	2023-02-27	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	7SJR	25164	2023-02-21	2021-10-18	3.8	3.91	—	3.8	0.005	0.79	0.0	0.04	17.55	0.01	1.895	13.38	0.08	8.9	91.1	0.0	-1.61	0.77	0.83	1.72	3.8	0.003	0.62	0.0	0.04	18.86	0.00	2.044	8.50	0.00	6.8	93.2	0.0	-0.08	1.14	0.76	0.82	0.82	13696	1713	4	35	3	0	0	logfile
✔	6VE3	21153	2023-02-24	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.46	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	4.4	0.004	0.91	0.0	0.05	7.54	0.00	2.122	11.06	0.00	11.2	88.8	0.0	-2.55	1.90	0.82	0.82	—	22484	4578	14	0	0	0	0	logfile
✔	7S9B	24931	2023-02-19	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.67	0.0	0.04	11.95	0.00	2.218	12.11	0.00	8.0	92.0	0.0	0.41	0.42	0.60	0.80	—	10458	1356	2	0	0	0	0	logfile
✔	3JBR	6475	2023-02-22	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.74	0.0	0.04	10.79	0.00	2.077	14.42	0.00	11.2	86.7	2.1	-0.60	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	6UCU	20728	2023-02-19	2019-09-17	3.06	3.72	—	3.6	0.008	0.95	0.0	0.09	12.81	0.01	2.022	3.01	0.12	2.8	97.2	0.0	-1.25	0.59	0.73	3.07	3.6	0.005	0.65	0.0	0.04	14.17	0.00	2.181	7.09	0.00	3.6	96.4	0.0	1.09	0.51	0.53	0.71	3.09	8198	958	20	0	60	0	0	logfile
✔	7K4E	22666	2023-02-23	2020-09-15	4.34	5.29	—	4.9	0.010	1.06	0.0	0.06	12.34	0.01	2.286	5.83	0.56	8.2	91.8	0.0	-4.96	0.63	0.76	—	4.9	0.003	0.83	0.0	0.04	13.15	0.00	2.157	15.68	0.00	6.8	93.2	0.0	-1.85	1.04	0.64	0.77	—	20119	2480	8	0	5	0	0	logfile
✔	7SCZ	25043	2023-02-24	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.04	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.89	0.00	1.967	6.90	0.00	2.2	97.8	0.0	2.69	1.42	0.79	0.80	1.57	23205	850	11	294	0	0	10435	logfile
✔	6M68	30116	2023-02-21	2020-03-13	4.6	5.04	—	4.8	0.005	1.00	0.0	0.06	14.61	0.01	2.175	5.67	0.00	10.0	90.0	0.0	-5.56	0.66	0.79	—	4.8	0.004	0.82	0.0	0.04	13.50	0.00	2.088	17.47	0.00	10.7	89.3	0.0	-1.87	1.55	0.66	0.79	—	14938	1855	7	0	0	0	0	logfile
✔	6SH5	10194	2023-02-20	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.003	0.80	0.0	0.04	4.62	0.00	2.317	4.40	0.00	12.7	87.0	0.3	-3.50	1.63	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile

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