Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BNP	7116	2022-11-29	2017-11-17	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56792	7160	22	0	16	0	0	logfile
✔	7XU2	33456	2022-11-29	2022-05-18	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53175	3321	18	0	66	0	26205	logfile
✔	7XU1	33455	2022-11-29	2022-05-18	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53077	3309	19	0	69	0	26160	logfile
✔	7RU6	24698	2022-11-29	2021-08-16	4.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5426	331	2	0	0	0	2725	logfile
✔	3J9E	6240	2022-11-29	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.86	0.0	0.04	17.74	0.00	2.228	10.46	0.46	7.4	91.7	1.0	0.84	1.22	0.75	0.85	3.56	4098	520	1	0	0	0	0	logfile
✔	7E3C	30979	2022-11-29	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.003	0.74	0.0	0.05	14.07	0.00	2.129	15.48	0.00	11.6	88.4	0.0	-2.98	1.56	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7oZH	13124	2022-11-29	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.3	0.005	0.74	0.0	0.05	14.80	0.00	2.352	19.62	0.77	10.2	89.8	0.0	-2.61	2.54	0.40	0.70	1.11	3890	580	10	0	0	0	0	logfile
✔	7RU4	24696	2022-11-29	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.81	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.78	0.0	0.05	14.99	0.00	2.187	10.36	0.82	6.2	93.8	0.0	-1.07	1.41	0.76	0.82	3.07	3382	428	5	0	4	0	0	logfile
✔	7N5F	24188	2022-11-29	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	7oZG	13123	2022-11-29	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4960	730	10	0	0	0	0	logfile
✔	7UMQ	26607	2022-11-29	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	3.14	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.003	0.80	0.0	0.04	14.16	0.00	2.326	16.18	1.54	10.3	89.7	0.0	-4.95	3.38	0.43	0.75	4.26	4380	620	10	0	0	0	0	logfile
✔	7N5G	24189	2022-11-29	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7RU8	24699	2022-11-29	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.86	0.0	0.11	10.41	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.003	0.76	0.0	0.05	14.52	0.00	2.121	13.71	0.00	8.6	91.4	0.0	-1.53	1.49	0.78	0.75	1.01	3198	405	5	0	3	0	0	logfile
✔	6QJQ	4566	2022-11-29	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	7D1T	30547	2022-11-29	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	5A7U	3079	2022-11-29	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	3KTT	5148	2022-11-29	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	6HRE	0259	2022-11-29	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.30	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	7LMS	23441	2022-11-29	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.51	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4947	613	4	0	1	0	0	logfile
✔	7U13	26276	2022-11-29	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	0.95	0.0	0.06	18.61	0.00	2.175	14.76	3.41	10.3	89.7	0.0	-4.10	6.72	0.32	0.56	1.24	3456	405	6	0	12	0	0	logfile

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