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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WCB | 21605 | 2024-03-15 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 15.30 | 0.00 | 2.048 | 4.22 | 0.49 | 1.7 | 98.3 | 0.0 | 3.30 | 1.27 | 0.53 | 0.79 | 2.50 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |
✔ | 5ZAK | 6904 | 2024-03-15 | 2018-02-07 | 4.4 | 3.52 | — | 3.2 | 0.009 | 1.61 | 1.0 | 0.07 | 11.72 | 0.01 | 2.185 | 17.87 | 0.72 | 17.3 | 82.4 | 0.3 | -5.20 | 0.80 | 0.64 | — | 3.3 | 0.003 | 0.95 | 0.0 | 0.05 | 13.30 | 0.01 | 2.134 | 25.56 | 0.00 | 14.9 | 85.1 | 0.0 | -2.78 | 1.64 | 0.80 | 0.65 | — | 11112 | 1389 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CKM | 30388 | 2024-03-15 | 2020-07-17 | 3.37 | 3.45 | — | 3.4 | 0.003 | 0.58 | 1.0 | 0.04 | 14.02 | 0.00 | 2.250 | 7.29 | 3.56 | 8.6 | 91.4 | 0.0 | -2.94 | 0.75 | 0.81 | 2.53 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.24 | 0.00 | 2.188 | 7.06 | 4.09 | 7.8 | 92.2 | 0.0 | -0.38 | 0.46 | 0.75 | 0.83 | 1.85 | 13114 | 1652 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 5UK2 | 8564 | 2024-03-22 | 2017-01-19 | 4.8 | 4.64 | — | 4.6 | 0.012 | 1.36 | 0.0 | 0.07 | 12.49 | 0.01 | 2.083 | 3.96 | 0.16 | 8.7 | 91.1 | 0.1 | -4.11 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✔ | 7RHR | 24467 | 2024-03-11 | 2021-07-18 | 3.0 | 3.18 | — | 3.1 | 0.006 | 0.84 | 0.0 | 0.05 | 11.89 | 0.01 | 2.131 | 9.63 | 0.00 | 5.1 | 94.8 | 0.1 | -0.44 | 0.68 | 0.81 | 3.54 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.57 | 0.00 | 2.141 | 6.21 | 2.17 | 4.5 | 95.4 | 0.1 | 0.90 | 0.47 | 0.68 | 0.83 | 2.65 | 7820 | 974 | 3 | 0 | 7 | 0 | 0 | logfile |
✘ | 7R1D | 14239 | 2024-03-10 | 2022-02-02 | 3.5 | 3.51 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 13.61 | 0.01 | 2.097 | 17.88 | 0.00 | 7.1 | 92.9 | 0.0 | -1.31 | 0.77 | 0.79 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5183 | 653 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RJC | 24484 | 2024-03-20 | 2021-07-20 | 3.3 | 3.46 | — | 3.4 | 0.007 | 0.82 | 2.0 | 0.05 | 13.58 | 0.00 | 1.018 | 11.43 | 0.20 | 4.6 | 95.2 | 0.2 | 0.13 | 0.56 | 0.68 | 3.90 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.33 | 0.00 | 1.970 | 9.39 | 1.54 | 3.8 | 96.2 | 0.0 | 0.85 | 0.74 | 0.67 | 0.81 | 3.68 | 28373 | 1907 | 13 | 0 | 6 | 0 | 13664 | logfile |
✔ | 7R9E | 24324 | 2024-03-11 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 9.14 | 0.00 | 2.120 | 9.84 | 0.98 | 5.4 | 94.6 | 0.0 | -0.26 | 2.08 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6PZC | 20534 | 2024-03-11 | 2019-07-31 | 4.34 | 4.63 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 11.22 | 0.01 | 2.137 | 7.52 | 0.42 | 9.7 | 90.3 | 0.0 | -5.15 | 0.60 | 0.54 | — | 4.4 | 0.004 | 0.75 | 0.0 | 0.04 | 11.33 | 0.00 | 2.087 | 13.46 | 0.00 | 6.9 | 93.0 | 0.1 | -0.07 | 1.65 | 0.70 | 0.78 | — | 7456 | 1173 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N8N | 24238 | 2024-03-15 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 27.93 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.004 | 0.75 | 0.0 | 0.04 | 28.76 | 0.01 | 2.141 | 21.14 | 2.63 | 6.8 | 92.9 | 0.3 | -0.72 | 1.28 | 0.87 | 0.80 | -0.05 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 6J5U | 0681 | 2024-03-14 | 2019-01-12 | 3.9 | 4.02 | — | 4.0 | 0.010 | 1.37 | 1.0 | 0.07 | 14.58 | 0.01 | 1.599 | 12.13 | 2.32 | 14.4 | 85.3 | 0.4 | -5.13 | 0.78 | 0.77 | 1.14 | 3.9 | 0.003 | 0.88 | 0.0 | 0.05 | 16.48 | 0.01 | 2.086 | 21.23 | 4.15 | 10.9 | 89.1 | 0.0 | -2.88 | 0.82 | 0.78 | 0.76 | 1.02 | 9288 | 1162 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2024-03-10 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.91 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.6 | 0.004 | 0.69 | 0.0 | 0.04 | 4.96 | 0.00 | 2.132 | 7.42 | 0.00 | 8.6 | 91.4 | 0.0 | -0.31 | 2.71 | 0.73 | 0.69 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DDP | 30653 | 2024-03-11 | 2020-10-29 | 3.4 | 2.88 | — | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.11 | 0.00 | 2.100 | 8.38 | 0.29 | 2.0 | 98.0 | 0.0 | -1.50 | 0.70 | 0.77 | 2.19 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 15.83 | 0.00 | 2.075 | 8.14 | 1.87 | 1.8 | 98.2 | 0.0 | 1.18 | 0.38 | 0.70 | 0.79 | 1.90 | 6477 | 791 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6KLE | 0709 | 2024-03-15 | 2019-07-30 | 4.5 | 4.63 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.12 | 0.00 | 2.199 | 13.77 | 0.07 | 7.6 | 92.4 | 0.0 | -0.87 | 0.83 | 0.76 | — | 4.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.20 | 0.00 | 2.122 | 15.93 | 0.00 | 8.5 | 91.5 | 0.0 | -0.69 | 0.49 | 0.84 | 0.79 | — | 12769 | 1592 | 3 | 7 | 2 | 0 | 0 | logfile |
✔ | 6L2T | 0814 | 2024-03-16 | 2019-10-06 | 4.1 | 4.14 | — | 4.2 | 0.003 | 0.61 | 0.0 | 0.05 | 12.33 | 0.00 | 2.222 | 5.89 | 0.15 | 13.8 | 86.0 | 0.2 | -5.72 | 0.61 | 0.76 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.05 | 12.47 | 0.01 | 2.155 | 6.63 | 0.00 | 14.7 | 85.3 | 0.1 | -3.87 | 0.49 | 0.60 | 0.76 | — | 13604 | 1889 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N8P | 24241 | 2024-03-11 | 2021-06-15 | 3.42 | 3.72 | — | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 14.42 | 0.01 | 2.276 | 4.27 | 0.29 | 5.9 | 94.1 | 0.0 | -5.50 | 0.73 | 0.80 | 1.99 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 15.53 | 0.00 | 2.155 | 8.17 | 2.51 | 4.8 | 95.2 | 0.0 | -0.47 | 0.36 | 0.70 | 0.84 | 1.22 | 6758 | 900 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KJY | 22902 | 2024-03-15 | 2020-10-26 | 3.2 | 3.84 | — | 3.6 | 0.007 | 0.71 | 0.0 | 0.05 | 15.50 | 0.00 | 2.169 | 14.16 | 4.48 | 7.0 | 93.0 | 0.0 | -3.91 | 0.84 | 0.85 | 2.16 | 3.6 | 0.004 | 0.55 | 0.0 | 0.04 | 15.70 | 0.00 | 2.049 | 12.76 | 3.17 | 3.6 | 96.4 | 0.0 | -0.75 | 2.13 | 0.84 | 0.85 | 2.63 | 10508 | 1388 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6HN4 | 0246 | 2024-03-10 | 2018-09-14 | 4.2 | 4.43 | — | 4.1 | 0.007 | 1.50 | 2.0 | 0.07 | 9.90 | 0.01 | 2.187 | 6.18 | 0.00 | 6.9 | 91.4 | 1.8 | -2.18 | 0.73 | 0.70 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.05 | 11.53 | 0.00 | 2.107 | 14.42 | 0.00 | 8.0 | 92.0 | 0.0 | 0.11 | 1.13 | 0.76 | 0.78 | — | 5702 | 700 | 2 | 0 | 6 | 0 | 0 | logfile |
✔ | 7U1E | 26299 | 2024-03-17 | 2022-02-21 | 4.52 | 4.53 | — | 4.5 | 0.001 | 0.42 | 0.0 | 0.04 | 12.91 | 0.00 | 2.240 | 5.36 | 2.68 | 3.6 | 96.4 | 0.0 | -1.42 | 0.60 | 0.73 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.04 | 12.47 | 0.00 | 2.150 | 12.07 | 0.00 | 4.9 | 95.1 | 0.0 | 0.07 | 0.59 | 0.61 | 0.76 | — | 18366 | 2741 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 5M5Y | 3448 | 2024-03-22 | 2016-10-23 | 4.0 | 4.14 | — | 4.1 | 0.003 | 0.69 | 3.0 | 0.05 | 12.89 | 0.00 | 1.385 | 12.95 | 1.65 | 5.5 | 94.3 | 0.2 | -4.51 | 0.74 | 0.68 | — | 4.1 | 0.005 | 0.90 | 0.0 | 0.05 | 17.01 | 0.00 | 1.975 | 25.09 | 6.04 | 10.4 | 89.5 | 0.1 | -2.51 | 1.61 | 0.78 | 0.75 | — | 34104 | 4161 | 22 | 51 | 6 | 0 | 0 | logfile |