Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6H4N	0137	2023-08-30	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	5.99	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147282	6188	57	4636	0	0	0	logfile
✔	6YLG	10838	2023-08-30	2020-04-07	3.0	3.12	3.00	3.0	0.004	0.87	18.0	0.08	16.78	0.01	1.432	4.86	0.17	6.8	92.8	0.4	-2.93	0.80	0.87	3.34	3.0	0.004	0.63	0.0	0.04	17.28	0.00	1.806	8.48	4.14	6.8	93.1	0.1	-0.45	0.49	0.81	0.90	2.86	147190	9666	61	3310	8	0	0	logfile
✔	7oTC	13058	2023-08-30	2021-06-10	2.9	3.10	—	3.1	0.005	0.71	1.0	0.03	13.78	0.02	1.846	9.04	0.04	3.6	96.3	0.1	-0.49	0.73	0.80	2.51	3.1	0.004	0.65	0.0	0.04	14.62	0.01	1.907	10.46	2.80	3.5	96.5	0.0	-0.30	1.17	0.78	0.86	2.50	147132	6239	64	4557	305	0	0	logfile
✘	5X8P	6709	2023-08-30	2017-03-03	3.4	3.42	—	3.4	0.008	1.05	8.0	0.05	14.94	0.01	1.051	8.93	0.76	10.9	88.5	0.6	-4.53	0.78	0.75	1.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147126	6323	58	4508	0	0	0	logfile
✔	6ENJ	3899	2023-08-30	2017-10-05	3.7	3.76	—	3.7	0.003	0.61	0.0	0.03	14.08	0.01	1.234	4.06	0.06	8.4	91.3	0.3	-4.96	0.77	0.77	1.43	3.7	0.007	0.84	0.0	0.04	16.60	0.01	2.028	18.23	1.34	12.8	86.9	0.3	-3.13	1.77	0.80	0.81	1.43	147111	5950	56	4693	0	0	0	logfile
✔	6WD1	21620	2023-08-30	2020-03-31	3.3	3.61	3.63	3.4	0.006	0.94	0.0	0.08	13.39	0.01	2.219	11.79	0.55	10.6	87.9	1.5	-5.05	0.82	0.83	1.64	3.4	0.005	0.68	0.0	0.04	15.58	0.00	2.015	18.97	0.77	9.9	89.9	0.1	-2.20	0.68	0.83	0.85	1.26	146942	6023	56	4657	0	0	0	logfile
✔	6oT3	20193	2023-08-30	2019-05-02	3.9	5.27	—	3.3	0.007	0.84	2.0	0.04	15.90	0.02	1.940	11.90	0.28	5.0	94.9	0.1	-3.85	0.92	0.88	0.62	3.3	0.005	0.74	0.0	0.04	16.73	0.01	1.810	32.91	0.85	6.5	93.5	0.0	-1.71	1.78	0.92	0.88	0.48	146899	6031	62	4642	14	0	0	logfile
✔	5NP6	3618	2023-08-30	2017-04-13	3.6	4.23	3.52	3.6	0.004	0.66	0.0	0.06	15.49	0.02	0.612	13.59	0.00	14.9	84.5	0.6	-4.69	0.90	0.87	2.11	3.6	0.004	0.74	0.0	0.04	16.14	0.01	1.947	16.57	0.72	9.0	90.5	0.5	-1.53	1.66	0.92	0.90	1.66	146883	5995	57	4667	0	0	0	logfile
✔	6oUo	20204	2023-08-30	2019-05-05	3.7	4.99	—	3.3	0.007	0.84	1.0	0.04	15.90	0.02	1.584	12.06	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.004	0.76	1.0	0.04	17.05	0.01	1.854	33.75	0.75	5.7	94.3	0.0	-1.64	2.62	0.92	0.84	0.47	146867	6028	61	4642	14	0	0	logfile
✔	6YST	10907	2023-08-29	2020-04-23	3.2	3.49	3.06	3.3	0.008	0.88	13.0	0.05	17.24	0.02	1.346	20.72	0.48	13.5	86.1	0.4	-4.56	0.81	0.84	2.11	3.3	0.005	0.74	0.0	0.04	17.37	0.01	1.823	18.98	0.86	10.8	89.1	0.1	-2.31	1.23	0.81	0.85	1.59	146847	6105	68	4643	257	0	0	logfile
✔	5JTE	8175	2023-08-29	2016-05-09	3.6	3.13	—	3.2	0.015	1.75	0.0	0.07	12.22	0.01	1.432	6.25	0.00	7.4	90.0	2.7	-1.94	0.53	0.56	0.78	3.1	0.006	0.90	0.0	0.05	16.17	0.01	2.025	16.45	1.18	10.2	89.1	0.8	-2.75	1.48	0.58	0.68	1.21	146760	5625	59	4786	1	0	0	logfile
✘	6oSQ	20187	2023-08-29	2019-05-02	3.5	3.55	—	3.5	0.008	0.89	1.0	0.05	14.48	0.02	2.007	4.45	0.37	6.0	94.0	0.1	-4.90	0.83	0.87	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146756	5966	68	4642	438	0	0	logfile
✔	7oBR	12801	2023-08-30	2021-04-23	2.8	2.88	—	2.9	0.002	0.49	1.0	0.03	15.19	0.00	1.835	8.03	2.55	4.6	95.3	0.0	0.58	0.61	0.80	2.85	2.8	0.004	0.68	0.0	0.04	17.37	0.01	1.834	9.58	3.96	5.9	94.0	0.1	-0.12	1.21	0.65	0.86	3.11	146701	7484	60	4019	102	0	0	logfile
✔	6HTQ	0270	2023-08-29	2018-10-04	4.5	4.18	—	4.1	0.008	0.89	0.0	0.04	17.41	0.01	2.213	8.09	0.32	10.3	89.4	0.3	-4.50	0.83	0.79	—	4.1	0.004	0.70	0.0	0.04	17.81	0.01	1.973	21.56	0.06	11.1	88.8	0.1	-2.67	0.75	0.83	0.79	—	146680	5640	53	4770	0	0	0	logfile
✔	6oSK	20184	2023-08-29	2019-05-01	3.6	3.41	—	3.3	0.008	0.87	1.0	0.05	14.64	0.02	1.837	5.18	0.51	5.2	94.6	0.1	-4.40	0.78	0.85	2.75	3.3	0.007	0.74	0.0	0.04	15.73	0.01	1.778	14.48	1.09	5.8	94.1	0.0	-1.26	1.74	0.78	0.85	1.70	146659	5969	65	4642	309	0	0	logfile
✔	5MDZ	3493	2023-08-29	2016-11-13	3.1	3.20	3.10	3.2	0.010	1.27	21.0	0.10	16.47	0.02	1.430	2.76	6.88	4.7	94.9	0.4	-1.93	0.79	0.88	2.66	3.2	0.004	0.62	0.0	0.03	15.28	0.01	1.870	7.91	0.39	3.1	96.8	0.1	0.33	0.53	0.80	0.88	2.63	146639	5973	66	4638	439	2	0	logfile
✘	6o9K	0662	2023-08-29	2019-03-14	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.96	—	—	—	4.0	0.004	0.74	0.0	0.04	16.90	0.01	2.050	28.53	1.02	10.2	89.2	0.6	-2.50	—	0.92	0.85	—	146597	6162	55	4594	0	0	0	logfile
✔	8AKN	15488	2023-08-29	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	14.48	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.005	0.79	0.0	0.04	15.02	0.01	1.767	7.21	2.33	2.6	97.3	0.1	-0.01	1.22	0.72	0.85	4.95	146513	5960	103	4552	309	1754	0	logfile
✔	7oJ0	12937	2023-08-29	2021-05-13	3.5	3.49	—	3.3	0.006	0.84	1.0	0.04	14.16	0.02	1.995	7.15	0.16	4.4	95.5	0.1	-1.32	0.87	0.88	2.11	3.3	0.004	0.70	0.0	0.04	14.86	0.01	1.827	15.59	0.95	5.1	94.8	0.1	-0.70	0.39	0.87	0.88	1.70	146507	6266	66	4525	310	0	0	logfile
✔	6ENU	3903	2023-08-29	2017-10-06	3.1	3.15	—	3.1	0.008	1.01	1.0	0.05	15.28	0.01	1.009	4.96	1.19	10.8	88.5	0.7	-4.85	0.82	0.84	2.83	3.1	0.004	0.66	0.0	0.04	15.77	0.00	2.067	11.42	0.71	9.9	89.9	0.2	-2.16	0.58	0.83	0.87	2.27	146475	6094	58	4613	0	0	0	logfile

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