Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UAQ	26430	2022-11-29	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.16	2.0	0.07	12.64	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.005	0.84	0.0	0.05	14.98	0.00	2.126	20.16	1.08	10.3	89.7	0.0	-2.17	1.27	0.58	0.79	2.01	4362	533	8	0	10	0	0	logfile
✔	7QES	13939	2022-11-29	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.28	0.00	2.162	3.90	0.91	3.1	96.9	0.0	2.67	1.25	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	6Yo0	10862	2022-11-29	2020-04-14	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55840	3598	17	0	10	0	28162	logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7M62	23687	2022-11-29	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	6oG3	20051	2022-11-29	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✘	7SoF	25269	2022-11-29	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.28	1.0	0.07	8.50	0.01	2.563	1.26	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3735	488	5	0	9	0	0	logfile
✔	6UKN	20807	2022-11-29	2019-10-05	3.65	3.85	—	3.8	0.005	0.78	0.0	0.05	14.79	0.01	2.280	4.10	0.47	7.7	92.3	0.0	-2.59	0.70	0.82	2.20	3.9	0.003	0.75	0.0	0.05	16.57	0.00	2.206	8.57	0.93	7.5	92.5	0.0	0.32	1.29	0.69	0.81	1.16	4109	536	4	0	8	0	0	logfile
✔	5VRF	8728	2022-11-29	2017-05-10	4.1	4.21	—	4.1	0.011	1.28	0.0	0.06	10.38	0.01	1.994	8.85	0.00	2.5	97.5	0.0	-4.10	0.82	0.83	—	4.1	0.003	0.72	0.0	0.04	13.49	0.00	1.994	11.46	0.00	1.8	98.2	0.0	2.10	3.54	0.83	0.83	—	4378	564	4	0	8	0	0	logfile
✘	6XPE	22286	2022-11-29	2020-07-08	4.1	4.23	—	4.2	0.006	0.82	0.0	0.04	14.30	0.00	1.492	20.11	2.08	10.6	88.1	1.3	-5.36	0.60	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4292	554	4	0	8	0	0	logfile
✔	7LRS	23498	2022-11-29	2021-02-17	3.89	4.36	3.88	4.1	0.003	0.64	0.0	0.04	13.26	0.00	2.181	9.22	0.19	10.7	88.7	0.6	-2.85	0.87	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4912	625	5	0	8	0	0	logfile
✔	7QEV	13942	2022-11-29	2021-12-03	2.9	3.46	—	3.1	0.010	0.74	0.0	0.05	13.76	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	15.95	0.00	2.153	5.61	1.17	2.9	97.1	0.0	2.25	1.67	0.79	0.86	2.57	3204	383	6	0	8	8	0	logfile
✘	7RBU	24402	2022-11-29	2021-07-06	3.7	2.38	—	2.2	0.005	0.78	0.0	0.05	12.41	0.00	2.167	6.95	0.00	9.1	90.7	0.2	-2.50	0.74	0.77	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4107	510	6	0	7	0	0	logfile
✔	7Y13	33555	2022-11-29	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.46	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.58	0.0	0.04	15.64	0.01	2.188	8.24	0.86	5.3	94.7	0.0	2.59	0.26	0.58	0.82	2.60	2199	264	1	0	7	2	0	logfile
✔	7SK0	25168	2022-11-29	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.76	0.0	0.04	15.88	0.00	2.177	14.34	0.00	2.2	97.8	0.0	1.88	0.59	0.50	0.70	1.92	4168	514	4	0	7	0	0	logfile
✔	7SK1	25169	2022-11-29	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.63	0.0	0.04	15.96	0.01	2.301	7.30	0.43	4.2	95.8	0.0	0.11	0.58	0.59	0.74	0.71	4291	524	4	0	7	0	0	logfile
✔	7SoD	25267	2022-11-29	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.22	0.0	0.07	9.29	0.01	2.129	0.53	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.60	0.0	0.05	12.91	0.00	2.283	3.87	0.25	3.7	96.3	0.0	0.95	1.54	0.71	0.91	5.36	3830	473	5	0	7	0	0	logfile
✔	7W3T	32293	2022-11-29	2021-11-26	3.59	2.49	3.54	2.2	0.003	0.60	0.0	0.05	13.93	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.004	0.65	0.0	0.05	16.04	0.01	2.224	13.09	0.62	6.3	93.7	0.0	-3.15	0.36	0.77	0.76	3.69	1455	176	3	0	7	0	0	logfile
✔	6ZS5	11388	2022-11-29	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✘	7SoC	25266	2022-11-29	2021-10-29	3.3	3.48	3.25	3.5	0.010	1.21	0.0	0.07	10.55	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3448	433	5	0	7	0	0	logfile

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