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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7F4V | 31455 | 2023-02-26 | 2021-06-21 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✘ | 7LX0 | 23563 | 2023-02-28 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✔ | 8GZ3 | 34389 | 2023-02-18 | 2022-09-24 | 3.3 | 3.13 | — | 3.1 | 0.012 | 1.44 | 3.0 | 0.10 | 13.66 | 0.01 | 2.142 | 5.81 | 1.74 | 1.8 | 98.2 | 0.0 | -0.20 | 0.63 | 0.77 | 2.77 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 14.05 | 0.00 | 2.134 | 5.74 | 0.47 | 1.5 | 98.5 | 0.0 | 0.66 | 1.19 | 0.71 | 0.83 | 3.17 | 8542 | 789 | 7 | 0 | 434 | 1 | 0 | logfile |
✔ | 6J3Y | 9775 | 2023-02-27 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.72 | 4.0 | 0.14 | 17.96 | 0.01 | 1.372 | 10.00 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.88 | 0.00 | 1.992 | 12.58 | 0.43 | 3.4 | 96.6 | 0.0 | 0.05 | 0.65 | 0.79 | 0.87 | 2.82 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✔ | 6WTH | 21896 | 2023-02-20 | 2020-05-02 | 3.06 | 3.56 | 3.08 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 6.83 | 0.00 | 2.217 | 4.94 | 0.84 | 2.2 | 97.8 | 0.0 | -3.50 | 0.72 | 0.75 | 3.88 | 3.4 | 0.004 | 0.57 | 0.0 | 0.04 | 12.63 | 0.00 | 2.206 | 7.09 | 0.37 | 4.2 | 95.8 | 0.0 | -0.82 | 0.60 | 0.77 | 0.87 | 3.82 | 11740 | 1183 | 12 | 0 | 422 | 0 | 0 | logfile |
✘ | 6PNJ | 20397 | 2023-02-28 | 2019-07-02 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71511 | 6660 | 60 | 0 | 420 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2023-02-22 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |
✔ | 3JBR | 6475 | 2023-02-22 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.008 | 1.30 | 0.0 | 0.06 | 8.64 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 10.79 | 0.00 | 2.077 | 14.42 | 0.00 | 11.2 | 86.7 | 2.1 | -0.60 | 1.53 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✘ | 6ZZY | 11589 | 2023-02-22 | 2020-08-05 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54609 | 4594 | 44 | 0 | 379 | 0 | 0 | logfile |
✔ | 6E11 | 8952 | 2023-02-22 | 2018-07-08 | 4.23 | 4.35 | — | 4.2 | 0.007 | 1.11 | 6.0 | 0.06 | 9.72 | 0.01 | 1.079 | 10.29 | 0.49 | 7.9 | 91.8 | 0.3 | -4.77 | 0.79 | 0.73 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 12.46 | 0.00 | 2.061 | 15.20 | 0.02 | 7.7 | 92.2 | 0.1 | -1.17 | 1.07 | 0.81 | 0.79 | — | 57401 | 6820 | 34 | 0 | 373 | 0 | 0 | logfile |
✔ | 5U0P | 8479 | 2023-02-23 | 2016-11-26 | 4.4 | 4.99 | — | 4.2 | 0.007 | 1.18 | 1.0 | 0.05 | 8.61 | 0.01 | 1.541 | 18.54 | 0.00 | 8.3 | 88.2 | 3.4 | -2.22 | 0.75 | 0.62 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.04 | 11.34 | 0.00 | 2.156 | 21.25 | 0.00 | 9.3 | 90.0 | 0.6 | -0.50 | 1.66 | 0.82 | 0.78 | — | 20268 | 2557 | 16 | 0 | 372 | 0 | 0 | logfile |
✘ | 6KMW | 0726 | 2023-02-24 | 2019-08-01 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✔ | 5TJ5 | 8409 | 2023-02-21 | 2016-10-03 | 3.9 | 4.19 | — | 4.1 | 0.010 | 1.29 | 0.0 | 0.05 | 9.13 | 0.01 | 1.040 | 27.77 | 0.12 | 14.4 | 85.2 | 0.4 | -6.37 | 0.62 | 0.69 | 1.87 | 4.2 | 0.003 | 0.92 | 0.0 | 0.05 | 12.87 | 0.00 | 2.125 | 14.29 | 1.22 | 5.5 | 94.3 | 0.2 | 0.50 | 1.77 | 0.62 | 0.73 | 1.13 | 14976 | 2102 | 14 | 0 | 365 | 0 | 0 | logfile |
✘ | 6KMX | 0727 | 2023-02-24 | 2019-08-01 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✔ | 5Y81 | 6816 | 2023-02-28 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 9.83 | 0.00 | 2.062 | 10.61 | 0.10 | 9.3 | 89.7 | 1.0 | 0.85 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 6E10 | 8951 | 2023-02-22 | 2018-07-08 | 4.16 | 4.27 | — | 4.2 | 0.008 | 1.16 | 11.0 | 0.07 | 10.73 | 0.01 | 1.063 | 10.41 | 1.07 | 5.8 | 93.8 | 0.4 | -4.45 | 0.79 | 0.72 | — | 4.1 | 0.005 | 0.78 | 0.0 | 0.05 | 12.99 | 0.00 | 2.041 | 18.19 | 0.05 | 7.3 | 92.4 | 0.2 | -0.84 | 1.49 | 0.83 | 0.81 | — | 57352 | 6823 | 34 | 0 | 359 | 0 | 0 | logfile |
✔ | 5MMJ | 3532 | 2023-02-22 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.61 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 16.28 | 0.01 | 1.334 | 19.31 | 1.26 | 5.4 | 94.4 | 0.1 | -0.53 | 1.60 | 0.91 | 0.85 | 1.05 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 6MZC | 9298 | 2023-02-23 | 2018-11-05 | 4.5 | 4.36 | 4.48 | 4.3 | 0.010 | 1.33 | 1.0 | 0.07 | 10.66 | 0.01 | 2.207 | 12.09 | 0.72 | 14.4 | 85.4 | 0.2 | -4.53 | 0.75 | 0.74 | — | 4.3 | 0.004 | 0.91 | 0.0 | 0.05 | 12.69 | 0.01 | 2.046 | 22.11 | 0.00 | 11.9 | 88.1 | 0.0 | -1.78 | 1.11 | 0.74 | 0.73 | — | 21254 | 2493 | 10 | 0 | 346 | 0 | 0 | logfile |
✔ | 7L8C | 23229 | 2023-02-21 | 2020-12-31 | 3.4 | 3.54 | 3.26 | 3.5 | 0.025 | 1.69 | 5.0 | 0.15 | 9.87 | 0.01 | 2.049 | 1.27 | 0.00 | 1.7 | 98.3 | 0.0 | 0.69 | 0.73 | 0.87 | 4.33 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.51 | 0.00 | 2.171 | 4.80 | 0.07 | 2.7 | 97.3 | 0.0 | 0.05 | 1.21 | 0.71 | 0.86 | 3.21 | 15963 | 1691 | 56 | 0 | 331 | 0 | 0 | logfile |
✔ | 6ZNN | 11318 | 2023-02-23 | 2020-07-06 | 4.5 | 5.10 | 4.05 | 4.4 | 0.014 | 1.77 | 0.0 | 0.09 | 13.07 | 0.00 | 1.790 | 1.74 | 0.00 | 7.7 | 92.2 | 0.1 | -3.13 | 0.78 | 0.72 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 12.89 | 0.00 | 2.134 | 15.08 | 0.00 | 5.1 | 94.8 | 0.1 | -0.21 | 0.99 | 0.81 | 0.82 | — | 19457 | 2320 | 17 | 0 | 328 | 0 | 0 | logfile |