Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7F4V	31455	2023-02-26	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✘	7LX0	23563	2023-02-28	2021-03-02	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72462	6699	60	0	447	0	0	logfile
✔	8GZ3	34389	2023-02-18	2022-09-24	3.3	3.13	—	3.1	0.012	1.44	3.0	0.10	13.66	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.004	0.68	0.0	0.04	14.05	0.00	2.134	5.74	0.47	1.5	98.5	0.0	0.66	1.19	0.71	0.83	3.17	8542	789	7	0	434	1	0	logfile
✔	6J3Y	9775	2023-02-27	2019-01-07	3.3	3.49	—	3.4	0.019	1.72	4.0	0.14	17.96	0.01	1.372	10.00	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.004	0.68	0.0	0.04	16.88	0.00	1.992	12.58	0.43	3.4	96.6	0.0	0.05	0.65	0.79	0.87	2.82	70136	6984	90	0	428	0	0	logfile
✔	6WTH	21896	2023-02-20	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.54	0.0	0.04	6.83	0.00	2.217	4.94	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.004	0.57	0.0	0.04	12.63	0.00	2.206	7.09	0.37	4.2	95.8	0.0	-0.82	0.60	0.77	0.87	3.82	11740	1183	12	0	422	0	0	logfile
✘	6PNJ	20397	2023-02-28	2019-07-02	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71511	6660	60	0	420	0	0	logfile
✘	6ZZX	11588	2023-02-22	2020-08-05	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56369	4684	68	0	403	99	0	logfile
✔	3JBR	6475	2023-02-22	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.74	0.0	0.04	10.79	0.00	2.077	14.42	0.00	11.2	86.7	2.1	-0.60	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✘	6ZZY	11589	2023-02-22	2020-08-05	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54609	4594	44	0	379	0	0	logfile
✔	6E11	8952	2023-02-22	2018-07-08	4.23	4.35	—	4.2	0.007	1.11	6.0	0.06	9.72	0.01	1.079	10.29	0.49	7.9	91.8	0.3	-4.77	0.79	0.73	—	4.2	0.003	0.69	0.0	0.04	12.46	0.00	2.061	15.20	0.02	7.7	92.2	0.1	-1.17	1.07	0.81	0.79	—	57401	6820	34	0	373	0	0	logfile
✔	5U0P	8479	2023-02-23	2016-11-26	4.4	4.99	—	4.2	0.007	1.18	1.0	0.05	8.61	0.01	1.541	18.54	0.00	8.3	88.2	3.4	-2.22	0.75	0.62	—	4.2	0.004	0.79	0.0	0.04	11.34	0.00	2.156	21.25	0.00	9.3	90.0	0.6	-0.50	1.66	0.82	0.78	—	20268	2557	16	0	372	0	0	logfile
✘	6KMW	0726	2023-02-24	2019-08-01	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✔	5TJ5	8409	2023-02-21	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.2	0.003	0.92	0.0	0.05	12.87	0.00	2.125	14.29	1.22	5.5	94.3	0.2	0.50	1.77	0.62	0.73	1.13	14976	2102	14	0	365	0	0	logfile
✘	6KMX	0727	2023-02-24	2019-08-01	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✔	5Y81	6816	2023-02-28	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.83	0.00	2.062	10.61	0.10	9.3	89.7	1.0	0.85	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6E10	8951	2023-02-22	2018-07-08	4.16	4.27	—	4.2	0.008	1.16	11.0	0.07	10.73	0.01	1.063	10.41	1.07	5.8	93.8	0.4	-4.45	0.79	0.72	—	4.1	0.005	0.78	0.0	0.05	12.99	0.00	2.041	18.19	0.05	7.3	92.4	0.2	-0.84	1.49	0.83	0.81	—	57352	6823	34	0	359	0	0	logfile
✔	5MMJ	3532	2023-02-22	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.31	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	6MZC	9298	2023-02-23	2018-11-05	4.5	4.36	4.48	4.3	0.010	1.33	1.0	0.07	10.66	0.01	2.207	12.09	0.72	14.4	85.4	0.2	-4.53	0.75	0.74	—	4.3	0.004	0.91	0.0	0.05	12.69	0.01	2.046	22.11	0.00	11.9	88.1	0.0	-1.78	1.11	0.74	0.73	—	21254	2493	10	0	346	0	0	logfile
✔	7L8C	23229	2023-02-21	2020-12-31	3.4	3.54	3.26	3.5	0.025	1.69	5.0	0.15	9.87	0.01	2.049	1.27	0.00	1.7	98.3	0.0	0.69	0.73	0.87	4.33	3.5	0.003	0.57	0.0	0.04	13.51	0.00	2.171	4.80	0.07	2.7	97.3	0.0	0.05	1.21	0.71	0.86	3.21	15963	1691	56	0	331	0	0	logfile
✔	6ZNN	11318	2023-02-23	2020-07-06	4.5	5.10	4.05	4.4	0.014	1.77	0.0	0.09	13.07	0.00	1.790	1.74	0.00	7.7	92.2	0.1	-3.13	0.78	0.72	—	4.4	0.003	0.72	0.0	0.04	12.89	0.00	2.134	15.08	0.00	5.1	94.8	0.1	-0.21	0.99	0.81	0.82	—	19457	2320	17	0	328	0	0	logfile

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