Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TDK	25832	2022-07-04	2021-12-31	3.8	4.07	3.86	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	5.03	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	82.0	0.14	20.00	0.02	0.886	99.70	3.23	38.3	59.1	2.6	-7.46	2.33	0.89	0.86	1.21	117136	12936	8	0	3616	0	0	logfile
✔	7TDH	25829	2022-07-04	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.69	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.64	75.0	0.11	19.60	0.02	0.880	152.93	3.43	43.5	54.9	1.6	-7.27	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	5T9S	8375	2022-07-04	2016-09-09	4.2	4.32	4.62	4.2	0.004	0.88	0.0	0.05	9.86	0.01	1.373	4.01	0.50	10.3	89.5	0.1	-5.16	0.72	0.73	—	4.2	0.003	0.74	0.0	0.04	12.44	0.00	2.078	13.48	0.00	11.1	88.7	0.1	-2.02	0.92	0.73	0.76	—	120756	13500	12	0	3608	0	0	logfile
✔	5T9M	8372	2022-07-04	2016-09-09	4.0	4.11	4.14	4.0	0.004	0.89	0.0	0.05	9.89	0.01	1.373	3.66	0.49	10.7	89.2	0.1	-5.48	0.71	0.76	—	4.0	0.007	0.92	2.0	0.04	14.35	0.01	1.594	18.20	0.15	13.4	86.4	0.2	-2.38	0.85	0.72	0.79	—	120756	13500	12	0	3608	0	0	logfile
✔	5T15	8342	2022-07-05	2016-08-17	3.6	3.80	3.88	3.7	0.007	1.01	0.0	0.05	10.37	0.01	1.373	4.08	0.45	11.5	88.2	0.3	-5.71	0.73	0.78	2.03	3.7	0.005	0.77	0.0	0.04	13.94	0.01	2.095	11.00	0.42	12.1	87.7	0.2	-1.84	1.47	0.74	0.80	1.33	120796	13508	12	0	3608	0	0	logfile
✘	7JMH	22394	2022-07-04	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.54	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7K0T	22616	2022-07-04	2020-09-05	4.3	4.52	4.28	4.2	0.003	0.64	1.0	0.04	13.78	0.00	2.133	7.56	0.59	7.4	92.4	0.2	-0.12	0.84	0.76	—	4.2	0.036	2.69	55.0	0.11	15.79	0.02	1.291	109.78	0.00	43.2	55.3	1.6	-7.41	1.92	0.86	0.83	—	115288	12743	8	0	3608	0	0	logfile
✘	7JMF	22392	2022-07-04	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.17	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMG	22393	2022-07-04	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.47	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	5T9N	8373	2022-07-04	2016-09-09	3.8	4.02	4.06	3.8	0.005	0.89	0.0	0.05	9.92	0.01	1.373	3.78	0.50	10.3	89.6	0.2	-5.47	0.76	0.78	1.96	3.8	0.004	0.76	0.0	0.04	13.86	0.00	2.092	11.28	0.38	11.3	88.5	0.2	-1.61	0.81	0.76	0.81	1.22	120756	13500	12	0	3608	0	0	logfile
✘	6PV6	20486	2022-07-04	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.55	0.31	11.0	88.9	0.1	-4.72	0.60	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMi	22395	2022-07-04	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.58	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMJ	22396	2022-07-04	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	10.02	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7K0S	22615	2022-07-04	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.93	0.00	2.069	9.77	0.95	7.8	92.0	0.2	-0.08	0.80	0.73	—	4.6	0.043	3.18	229.0	0.13	17.11	0.02	1.367	135.81	0.02	44.3	52.3	3.4	-7.54	2.27	0.84	0.82	—	116057	12911	8	0	3558	0	0	logfile
✔	6X64	22069	2022-07-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6o1o	0454	2022-07-04	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	13.69	0.00	1.998	30.49	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	5ADX	2856	2022-07-08	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.45	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.70	0.0	0.04	14.93	0.00	2.095	11.54	0.29	5.3	94.6	0.0	-0.47	0.91	0.86	0.79	—	49392	4737	27	0	2569	0	0	logfile
✔	3J8H	2807	2022-07-03	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.73	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	3.8	0.004	0.82	2.0	0.04	14.02	0.00	2.071	17.90	0.48	5.8	93.8	0.4	0.03	2.10	0.73	0.76	0.94	111160	12796	12	0	2276	0	0	logfile
✔	6F1T	4168	2022-07-06	2017-11-23	3.5	3.80	—	3.5	0.011	1.43	0.0	0.07	9.94	0.01	1.456	9.18	0.44	10.8	89.1	0.2	-4.05	0.76	0.63	1.82	3.5	0.004	0.77	0.0	0.04	14.12	0.00	1.882	15.42	0.27	8.3	91.7	0.0	-1.44	0.88	0.79	0.74	1.50	92795	11785	55	0	2212	0	0	logfile
✘	5LC5	4032	2022-07-08	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.86	0.01	1.587	6.09	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51718	5916	52	0	1988	0	0	logfile

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