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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TDK | 25832 | 2022-07-04 | 2021-12-31 | 3.8 | 4.07 | 3.86 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 15.75 | 0.01 | 2.210 | 5.03 | 0.46 | 5.7 | 94.1 | 0.1 | -0.20 | 0.85 | 0.77 | 1.07 | 3.8 | 0.051 | 3.21 | 82.0 | 0.14 | 20.00 | 0.02 | 0.886 | 99.70 | 3.23 | 38.3 | 59.1 | 2.6 | -7.46 | 2.33 | 0.89 | 0.86 | 1.21 | 117136 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2022-07-04 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.69 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.64 | 75.0 | 0.11 | 19.60 | 0.02 | 0.880 | 152.93 | 3.43 | 43.5 | 54.9 | 1.6 | -7.27 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 5T9S | 8375 | 2022-07-04 | 2016-09-09 | 4.2 | 4.32 | 4.62 | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.86 | 0.01 | 1.373 | 4.01 | 0.50 | 10.3 | 89.5 | 0.1 | -5.16 | 0.72 | 0.73 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 12.44 | 0.00 | 2.078 | 13.48 | 0.00 | 11.1 | 88.7 | 0.1 | -2.02 | 0.92 | 0.73 | 0.76 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T9M | 8372 | 2022-07-04 | 2016-09-09 | 4.0 | 4.11 | 4.14 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 9.89 | 0.01 | 1.373 | 3.66 | 0.49 | 10.7 | 89.2 | 0.1 | -5.48 | 0.71 | 0.76 | — | 4.0 | 0.007 | 0.92 | 2.0 | 0.04 | 14.35 | 0.01 | 1.594 | 18.20 | 0.15 | 13.4 | 86.4 | 0.2 | -2.38 | 0.85 | 0.72 | 0.79 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T15 | 8342 | 2022-07-05 | 2016-08-17 | 3.6 | 3.80 | 3.88 | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 10.37 | 0.01 | 1.373 | 4.08 | 0.45 | 11.5 | 88.2 | 0.3 | -5.71 | 0.73 | 0.78 | 2.03 | 3.7 | 0.005 | 0.77 | 0.0 | 0.04 | 13.94 | 0.01 | 2.095 | 11.00 | 0.42 | 12.1 | 87.7 | 0.2 | -1.84 | 1.47 | 0.74 | 0.80 | 1.33 | 120796 | 13508 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2022-07-04 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.54 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2022-07-04 | 2020-09-05 | 4.3 | 4.52 | 4.28 | 4.2 | 0.003 | 0.64 | 1.0 | 0.04 | 13.78 | 0.00 | 2.133 | 7.56 | 0.59 | 7.4 | 92.4 | 0.2 | -0.12 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 55.0 | 0.11 | 15.79 | 0.02 | 1.291 | 109.78 | 0.00 | 43.2 | 55.3 | 1.6 | -7.41 | 1.92 | 0.86 | 0.83 | — | 115288 | 12743 | 8 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMF | 22392 | 2022-07-04 | 2020-07-31 | 4.5 | 5.06 | — | 4.7 | 0.005 | 0.98 | 0.0 | 0.05 | 10.23 | 0.01 | 1.373 | 8.17 | 0.36 | 11.2 | 88.6 | 0.2 | -4.91 | 0.54 | 0.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2022-07-04 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.47 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T9N | 8373 | 2022-07-04 | 2016-09-09 | 3.8 | 4.02 | 4.06 | 3.8 | 0.005 | 0.89 | 0.0 | 0.05 | 9.92 | 0.01 | 1.373 | 3.78 | 0.50 | 10.3 | 89.6 | 0.2 | -5.47 | 0.76 | 0.78 | 1.96 | 3.8 | 0.004 | 0.76 | 0.0 | 0.04 | 13.86 | 0.00 | 2.092 | 11.28 | 0.38 | 11.3 | 88.5 | 0.2 | -1.61 | 0.81 | 0.76 | 0.81 | 1.22 | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 6PV6 | 20486 | 2022-07-04 | 2019-07-19 | 4.5 | 5.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.05 | 10.65 | 0.01 | 1.373 | 9.55 | 0.31 | 11.0 | 88.9 | 0.1 | -4.72 | 0.60 | 0.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMi | 22395 | 2022-07-04 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.58 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMJ | 22396 | 2022-07-04 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 10.02 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2022-07-04 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.93 | 0.00 | 2.069 | 9.77 | 0.95 | 7.8 | 92.0 | 0.2 | -0.08 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 229.0 | 0.13 | 17.11 | 0.02 | 1.367 | 135.81 | 0.02 | 44.3 | 52.3 | 3.4 | -7.54 | 2.27 | 0.84 | 0.82 | — | 116057 | 12911 | 8 | 0 | 3558 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2022-07-04 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2022-07-04 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 13.69 | 0.00 | 1.998 | 30.49 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 5ADX | 2856 | 2022-07-08 | 2015-08-24 | 4.0 | 4.18 | — | 4.0 | 0.008 | 1.05 | 1.0 | 0.06 | 12.82 | 0.00 | 1.155 | 3.45 | 1.97 | 6.3 | 93.5 | 0.3 | -2.81 | 0.77 | 0.63 | — | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 14.93 | 0.00 | 2.095 | 11.54 | 0.29 | 5.3 | 94.6 | 0.0 | -0.47 | 0.91 | 0.86 | 0.79 | — | 49392 | 4737 | 27 | 0 | 2569 | 0 | 0 | logfile |
✔ | 3J8H | 2807 | 2022-07-03 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.73 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | 3.8 | 0.004 | 0.82 | 2.0 | 0.04 | 14.02 | 0.00 | 2.071 | 17.90 | 0.48 | 5.8 | 93.8 | 0.4 | 0.03 | 2.10 | 0.73 | 0.76 | 0.94 | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 6F1T | 4168 | 2022-07-06 | 2017-11-23 | 3.5 | 3.80 | — | 3.5 | 0.011 | 1.43 | 0.0 | 0.07 | 9.94 | 0.01 | 1.456 | 9.18 | 0.44 | 10.8 | 89.1 | 0.2 | -4.05 | 0.76 | 0.63 | 1.82 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 14.12 | 0.00 | 1.882 | 15.42 | 0.27 | 8.3 | 91.7 | 0.0 | -1.44 | 0.88 | 0.79 | 0.74 | 1.50 | 92795 | 11785 | 55 | 0 | 2212 | 0 | 0 | logfile |
✘ | 5LC5 | 4032 | 2022-07-08 | 2016-06-19 | 4.35 | 4.47 | 4.28 | 4.3 | 0.009 | 1.47 | 18.0 | 1.11 | 14.86 | 0.01 | 1.587 | 6.09 | 3.67 | 8.6 | 87.7 | 3.7 | -4.81 | 0.69 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51718 | 5916 | 52 | 0 | 1988 | 0 | 0 | logfile |