Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoD	20412	2022-11-29	2019-07-03	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53787	3427	20	0	25	0	27048	logfile
✘	3A5X	1641	2022-11-29	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	6PoS	20418	2022-11-29	2019-07-05	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53605	3425	20	0	13	0	26955	logfile
✔	7RTo	24685	2022-11-29	2021-08-13	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6607	888	3	0	0	0	0	logfile
✘	5A7U	3079	2022-11-29	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	7XH8	33191	2022-11-29	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.87	0.0	0.04	15.24	0.01	2.176	19.59	3.22	6.5	93.5	0.0	-0.91	2.01	0.67	0.74	1.72	3161	404	3	0	0	0	0	logfile
✔	7M7B	23709	2022-11-29	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.09	0.02	2.512	0.31	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4898	635	4	0	2	0	0	logfile
✔	7D1T	30547	2022-11-29	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	7QKK	14045	2022-11-29	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.69	0.0	0.05	17.34	0.00	2.154	11.04	1.52	6.3	93.7	0.0	-3.55	2.17	0.34	0.78	3.12	3537	228	3	0	0	0	1803	logfile
✔	7QKZ	14058	2022-11-29	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✔	6FU8	4319	2022-11-29	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	5LY6	4118	2022-11-29	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	3J9E	6240	2022-11-29	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.86	0.0	0.04	17.74	0.00	2.228	10.46	0.46	7.4	91.7	1.0	0.84	1.22	0.75	0.85	3.56	4098	520	1	0	0	0	0	logfile
✔	6UET	20756	2022-11-29	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.96	0.0	0.05	22.24	0.01	1.829	50.36	0.00	0.0	0.0	0.0	—	0.76	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✘	7WP1	32666	2022-11-29	2022-01-22	3.77	3.91	—	3.9	0.006	1.16	0.0	0.07	14.50	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3305	423	4	0	2	0	0	logfile
✔	7THE	25893	2022-11-29	2022-01-10	3.79	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.70	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.78	0.0	0.05	15.65	0.00	2.180	17.59	1.39	7.7	92.3	0.0	-1.24	0.72	0.68	0.75	2.45	3305	423	4	0	1	0	0	logfile
✔	7N98	24252	2022-11-29	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.67	0.0	0.04	16.86	0.01	2.379	7.88	0.54	8.1	91.9	0.0	0.07	0.49	0.50	0.81	1.23	3625	473	1	0	0	0	0	logfile
✔	7EYA	31380	2022-11-29	2021-05-30	3.77	3.98	—	4.0	0.008	0.99	0.0	0.04	13.90	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	4.0	0.003	0.64	0.0	0.04	16.17	0.01	2.170	9.53	0.60	7.0	92.8	0.2	-1.66	1.17	0.60	0.77	2.28	4629	576	5	0	3	0	0	logfile
✔	7QKF	14040	2022-11-29	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.53	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	17.62	0.00	2.431	6.09	2.31	3.4	96.6	0.0	-3.47	1.38	0.41	0.86	6.04	3783	249	6	0	0	0	1926	logfile
✔	7SL9	25195	2022-11-29	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.003	0.80	0.0	0.04	15.47	0.00	2.140	13.71	1.01	5.2	94.8	0.0	-1.21	1.23	0.64	0.82	1.53	4712	619	3	0	1	0	0	logfile

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