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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7D1T | 30547 | 2022-07-02 | 2020-09-15 | 1.95 | 1.88 | 1.89 | 1.9 | 0.020 | 1.91 | 31.0 | 0.10 | 18.53 | 0.02 | 1.200 | 3.45 | 2.40 | 1.9 | 97.9 | 0.2 | -0.93 | 0.77 | 0.85 | 6.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 7D1U | 30548 | 2022-07-08 | 2020-09-15 | 2.08 | 1.94 | 2.04 | 2.0 | 0.018 | 1.83 | 27.0 | 0.10 | 18.50 | 0.02 | 1.202 | 4.10 | 3.09 | 2.3 | 97.5 | 0.2 | -1.36 | 0.74 | 0.87 | 6.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52655 | 5312 | 106 | 0 | 196 | 2121 | 0 | logfile |
✘ | 7LoK | 23465 | 2022-07-04 | 2021-02-10 | 3.9 | 4.11 | — | 4.0 | 0.006 | 1.12 | 4.0 | 0.07 | 13.46 | 0.01 | 1.259 | 14.91 | 0.39 | 11.9 | 88.0 | 0.2 | -5.60 | 0.76 | 0.77 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14498 | 1999 | 19 | 0 | 32 | 0 | 0 | logfile |
✘ | 7KRo | 23008 | 2022-07-05 | 2020-11-20 | 3.6 | 4.10 | — | 4.0 | 0.008 | 0.73 | 0.0 | 0.05 | 14.56 | 0.00 | 1.225 | 9.00 | 9.40 | 6.9 | 92.8 | 0.3 | -1.73 | 0.79 | 0.81 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21988 | 2553 | 11 | 80 | 19 | 0 | 0 | logfile |
✘ | 6ZMW | 11302 | 2022-07-04 | 2020-07-04 | 3.7 | 3.79 | 3.57 | 3.7 | 0.007 | 1.19 | 0.0 | 0.06 | 16.15 | 0.01 | 1.218 | 7.28 | 2.46 | 6.4 | 93.3 | 0.2 | -2.63 | 0.70 | 0.65 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 118155 | 11116 | 62 | 1822 | 91 | 0 | 0 | logfile |
✘ | 7E2X | 30971 | 2022-07-03 | 2021-02-07 | 3.0 | 3.88 | — | 3.9 | 0.008 | 0.71 | 0.0 | 0.05 | 11.19 | 0.00 | 1.184 | 4.18 | 0.00 | 1.5 | 98.5 | 0.0 | 2.48 | 0.44 | 0.60 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7226 | 870 | 4 | 0 | 14 | 9 | 0 | logfile |
✘ | 7JRo | 22447 | 2022-07-03 | 2020-08-12 | 3.8 | 3.86 | 3.82 | 3.9 | 0.009 | 1.03 | 0.0 | 0.05 | 15.90 | 0.01 | 1.282 | 14.56 | 0.08 | 9.2 | 90.8 | 0.1 | -0.46 | 0.61 | 0.85 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12747 | 1492 | 17 | 0 | 26 | 0 | 0 | logfile |
✘ | 7M4R | 23665 | 2022-07-03 | 2021-03-22 | 3.65 | 4.49 | — | 4.2 | 0.007 | 0.83 | 0.0 | 0.05 | 14.71 | 0.01 | 2.259 | 9.04 | 0.00 | 14.2 | 85.6 | 0.2 | -2.94 | 0.74 | 0.66 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5092 | 639 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E2Z | 30973 | 2022-07-03 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.008 | 0.66 | 0.0 | 0.04 | 13.29 | 0.00 | 1.185 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7LWQ | 23554 | 2022-07-04 | 2021-03-01 | 3.44 | 3.73 | — | 3.6 | 0.013 | 1.77 | 6.0 | 0.09 | 13.64 | 0.01 | 2.529 | 0.26 | 0.90 | 6.5 | 93.1 | 0.4 | -1.31 | 0.72 | 0.71 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19190 | 2425 | 6 | 0 | 23 | 0 | 0 | logfile |
✘ | 7LQY | 23491 | 2022-07-05 | 2021-02-15 | 3.19 | 3.30 | — | 3.3 | 0.011 | 1.36 | 0.0 | 0.05 | 20.43 | 0.01 | 1.180 | 4.96 | 0.69 | 6.6 | 93.3 | 0.2 | -5.23 | 0.74 | 0.81 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22954 | 2636 | 8 | 0 | 38 | 0 | 0 | logfile |
✘ | 6VP9 | 21307 | 2022-07-03 | 2020-02-02 | 3.46 | 3.63 | — | 3.6 | 0.005 | 0.63 | 0.0 | 0.04 | 15.20 | 0.00 | 1.229 | 21.74 | 0.00 | 9.4 | 90.6 | 0.0 | -3.63 | 0.77 | 0.86 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8610 | 1077 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7E32 | 30974 | 2022-07-03 | 2021-02-07 | 2.9 | 3.21 | — | 3.1 | 0.003 | 0.45 | 0.0 | 0.04 | 12.53 | 0.00 | 1.363 | 6.09 | 0.10 | 2.1 | 97.9 | 0.0 | 2.17 | 0.62 | 0.74 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8797 | 1117 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 6XZA | 10656 | 2022-07-07 | 2020-02-03 | 2.66 | 4.00 | — | 3.8 | 0.006 | 0.66 | 1.0 | 0.04 | 14.20 | 0.00 | 0.349 | 6.78 | 2.91 | 3.1 | 96.4 | 0.4 | -1.96 | 0.72 | 0.68 | 2.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143983 | 5732 | 54 | 4616 | 1 | 0 | 0 | logfile |
✘ | 6XZB | 10657 | 2022-07-08 | 2020-02-03 | 2.54 | 3.99 | — | 3.8 | 0.006 | 0.62 | 1.0 | 0.04 | 14.32 | 0.01 | 0.178 | 7.13 | 2.93 | 3.1 | 96.4 | 0.4 | -1.96 | 0.75 | 0.71 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145650 | 5732 | 55 | 4692 | 1 | 0 | 0 | logfile |
✘ | 6XLM | 22248 | 2022-07-05 | 2020-06-28 | 3.2 | 3.76 | — | 3.5 | 0.008 | 0.79 | 0.0 | 0.05 | 14.95 | 0.00 | 1.395 | 9.49 | 0.07 | 0.7 | 99.3 | 0.0 | -2.52 | 0.82 | 0.84 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28244 | 3485 | 11 | 40 | 5 | 0 | 0 | logfile |
✘ | 7AAP | 11692 | 2022-07-03 | 2020-09-04 | 2.5 | 2.71 | 2.48 | 2.8 | 0.002 | 0.47 | 0.0 | 0.04 | 12.42 | 0.00 | 1.236 | 3.74 | 0.20 | 1.5 | 98.5 | 0.0 | 0.59 | 0.79 | 0.87 | 4.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9446 | 1120 | 9 | 21 | 7 | 0 | 0 | logfile |
✘ | 7CoY | 30420 | 2022-07-03 | 2020-08-05 | 2.5 | 2.41 | 2.54 | 2.5 | 0.017 | 1.73 | 5.0 | 0.10 | 14.13 | 0.01 | 1.106 | 11.63 | 0.90 | 5.6 | 94.3 | 0.1 | -3.23 | 0.57 | 0.80 | 3.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57966 | 6096 | 66 | 0 | 279 | 84 | 0 | logfile |
✘ | 7BC7 | 12141 | 2022-07-03 | 2020-12-18 | 3.3 | 3.46 | 3.24 | 3.4 | 0.008 | 0.87 | 0.0 | 0.05 | 14.35 | 0.01 | 1.181 | 12.54 | 0.23 | 9.4 | 90.5 | 0.2 | -1.48 | 0.58 | 0.84 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4209 | 549 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7EB2 | 31049 | 2022-07-04 | 2021-03-08 | 3.5 | 3.43 | — | 3.4 | 0.007 | 0.74 | 0.0 | 0.05 | 11.69 | 0.00 | 1.256 | 7.85 | 0.00 | 3.6 | 96.4 | 0.0 | -1.24 | 0.79 | 0.74 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18497 | 2337 | 8 | 0 | 2 | 0 | 0 | logfile |