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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6ZGK | 11209 | 2024-03-15 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6K0A | 30036 | 2024-03-18 | 2019-05-05 | 4.6 | 4.81 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 22.49 | 0.01 | 2.316 | 2.94 | 0.83 | 5.3 | 94.7 | 0.0 | -4.65 | 0.80 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 1364 | 14 | 516 | 2 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2024-03-16 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-03-12 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 7NF7 | 12297 | 2024-03-14 | 2021-02-05 | 2.68 | 2.40 | 2.58 | 2.6 | 0.006 | 0.71 | 0.0 | 0.05 | 17.23 | 0.00 | 2.336 | 5.26 | 6.53 | 4.7 | 95.1 | 0.2 | -3.11 | 0.69 | 0.83 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9642 | 1150 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 6HUP | 0283 | 2024-03-16 | 2018-10-09 | 3.58 | 3.70 | 3.52 | 3.6 | 0.013 | 1.19 | 0.0 | 0.08 | 13.63 | 0.01 | 2.251 | 5.90 | 0.00 | 4.9 | 95.1 | 0.0 | -3.42 | 0.72 | 0.85 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15265 | 1808 | 17 | 0 | 37 | 0 | 0 | logfile |
✘ | 8E9B | 27962 | 2024-03-24 | 2022-08-26 | 3.5 | 3.16 | 3.52 | 3.4 | 0.004 | 0.71 | 1.0 | 0.05 | 15.39 | 0.01 | 2.023 | 10.91 | 0.24 | 5.2 | 94.7 | 0.1 | 0.07 | 0.74 | 0.77 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39160 | 4933 | 25 | 0 | 20 | 0 | 0 | logfile |
✘ | 6RKo | 4908 | 2024-03-11 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 7PLS | 13499 | 2024-03-16 | 2021-09-01 | 2.49 | 2.49 | — | 2.6 | 0.003 | 0.58 | 0.0 | 0.05 | 16.35 | 0.00 | 2.275 | 4.66 | 1.33 | 5.6 | 94.4 | 0.0 | 0.35 | 0.74 | 0.86 | 5.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14224 | 1724 | 12 | 0 | 4 | 52 | 0 | logfile |
✘ | 7ZNK | 14804 | 2024-03-18 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.88 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2024-03-16 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2024-03-11 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 6QEL | 4537 | 2024-03-12 | 2019-01-08 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✘ | 8GZH | 34398 | 2024-03-25 | 2022-09-27 | 2.96 | 2.59 | 2.95 | 2.8 | 0.004 | 0.77 | 0.0 | 0.05 | 16.76 | 0.01 | 1.845 | 3.46 | 0.14 | 4.6 | 95.4 | 0.0 | -3.25 | 0.73 | 0.77 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30339 | 3693 | 13 | 104 | 5 | 0 | 0 | logfile |
✘ | 6PVQ | 20497 | 2024-03-17 | 2019-07-21 | 4.75 | 4.68 | — | 4.6 | 0.008 | 1.32 | 0.0 | 0.06 | 13.01 | 0.01 | 2.244 | 9.74 | 1.15 | 14.4 | 85.2 | 0.4 | -5.23 | 0.66 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17640 | 2160 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LXZ | 23580 | 2024-03-22 | 2021-03-05 | 2.6 | 2.71 | 2.68 | 2.7 | 0.011 | 1.22 | 0.0 | 0.07 | 11.32 | 0.01 | 2.435 | 0.76 | 0.00 | 2.0 | 98.0 | 0.0 | 0.49 | 0.74 | 0.77 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34353 | 4557 | 33 | 0 | 78 | 0 | 0 | logfile |
✘ | 7B5N | 12041 | 2024-03-14 | 2020-12-05 | 3.6 | 3.39 | 3.52 | 3.7 | 0.007 | 0.79 | 0.0 | 0.05 | 15.39 | 0.00 | 1.998 | 13.46 | 0.09 | 9.3 | 90.7 | 0.0 | -1.35 | 0.78 | 0.81 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9965 | 1229 | 9 | 0 | 10 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2024-03-24 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.86 | 0.01 | 2.211 | 9.80 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2024-03-15 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✘ | 8DBi | 27285 | 2024-03-16 | 2022-06-14 | 2.0 | 2.07 | 2.03 | 2.0 | 0.012 | 1.17 | 0.0 | 0.06 | 18.16 | 0.04 | 1.910 | 5.92 | 1.15 | 4.3 | 95.7 | 0.0 | 0.57 | 0.73 | 0.87 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14496 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |