Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BG9	12174	2023-02-21	2021-01-06	3.8	3.88	—	3.7	0.013	1.64	6.0	0.11	17.68	0.01	1.518	7.91	0.75	12.0	86.5	1.6	-5.05	0.81	0.82	2.36	3.6	0.002	0.66	0.0	0.03	17.72	0.01	2.055	9.99	0.11	6.2	93.8	0.0	-0.56	1.80	0.80	0.78	1.65	14233	1085	5	262	0	0	0	logfile
✔	6Z3Y	11066	2023-02-17	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	5JLF	8163	2023-02-21	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.72	0.0	0.04	15.21	0.00	1.982	12.28	0.52	3.4	96.3	0.3	0.12	1.43	0.68	0.83	1.85	15800	1835	12	0	280	0	0	logfile
✔	6QMB	4594	2023-02-19	2019-02-01	3.6	3.74	3.74	3.7	0.008	0.87	0.0	0.05	14.68	0.01	2.284	3.90	0.00	3.6	96.4	0.0	-3.44	0.75	0.84	2.36	3.7	0.003	0.60	0.0	0.04	16.39	0.00	2.177	8.74	0.26	3.4	96.6	0.0	1.46	1.17	0.75	0.83	1.46	10698	1322	4	0	4	0	0	logfile
✔	6B48	7052	2023-02-24	2017-09-25	3.6	3.85	—	3.9	0.007	0.98	1.0	0.06	11.90	0.01	2.223	6.03	0.10	12.1	87.8	0.1	-4.93	0.73	0.79	2.55	3.9	0.004	0.68	0.0	0.04	14.86	0.00	2.213	13.10	0.46	10.3	89.7	0.0	-1.92	1.06	0.73	0.79	1.64	22333	2976	11	60	0	0	0	logfile
✔	6W5U	21548	2023-02-21	2020-03-13	3.9	3.97	—	3.9	0.011	1.50	4.0	0.16	17.07	0.01	1.741	63.46	6.82	8.5	90.5	1.0	-2.76	0.61	0.76	1.73	3.9	0.004	0.79	0.0	0.05	17.86	0.00	2.218	12.56	0.69	6.6	93.3	0.1	-0.22	1.74	0.62	0.77	1.53	9474	1175	6	0	21	0	0	logfile
✔	7XQH	33396	2023-02-19	2022-05-07	3.8	4.45	3.57	4.2	0.005	0.78	0.0	0.04	15.53	0.01	2.337	5.28	2.23	3.6	95.9	0.5	-2.01	0.77	0.84	2.84	4.2	0.003	0.69	0.0	0.04	16.77	0.00	2.164	7.87	1.02	2.6	96.9	0.5	2.57	1.49	0.77	0.84	2.06	9774	1200	6	0	0	0	0	logfile
✔	7KVC	23046	2023-02-24	2020-11-27	4.7	4.90	—	4.8	0.005	0.84	0.0	0.05	13.91	0.00	2.224	33.61	0.00	10.7	89.3	0.0	-2.46	0.82	0.81	—	4.8	0.004	0.76	0.0	0.04	14.05	0.01	2.222	24.53	0.00	5.6	94.4	0.0	-0.15	0.55	0.81	0.79	—	21920	2660	10	0	0	0	0	logfile
✔	6V3G	21036	2023-02-26	2019-11-25	4.0	4.39	—	4.1	0.008	1.05	0.0	0.07	10.57	0.01	2.211	13.47	2.66	5.6	94.4	0.0	-2.76	0.72	0.77	—	4.1	0.003	0.77	0.0	0.04	12.72	0.00	2.157	14.36	0.19	3.5	96.5	0.0	-0.65	0.88	0.72	0.83	—	28520	3580	4	0	0	0	0	logfile
✔	6VWX	21425	2023-02-18	2020-02-20	3.1	3.47	—	3.5	0.011	1.29	0.0	0.05	22.59	0.01	2.200	11.67	15.83	8.1	91.5	0.4	-4.41	0.63	0.83	1.16	3.5	0.003	0.71	0.0	0.04	18.50	0.00	2.141	8.32	0.63	6.8	93.2	0.0	-1.03	0.65	0.65	0.84	1.97	7782	900	8	0	10	0	0	logfile
✔	7VBN	31883	2023-02-26	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.47	0.01	2.002	8.61	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	2.5	0.003	0.58	0.0	0.04	16.95	0.00	2.109	5.90	2.12	3.2	96.7	0.1	0.33	0.81	0.78	0.91	4.61	29042	3522	44	0	17	713	0	logfile
✔	6QM6	4589	2023-02-19	2019-02-01	3.7	3.81	3.67	3.8	0.004	0.84	0.0	0.05	14.34	0.01	2.338	4.35	0.00	3.3	96.7	0.0	-6.02	0.69	0.85	2.46	3.8	0.003	0.66	0.0	0.04	16.28	0.00	2.140	8.14	0.35	3.4	96.6	0.0	1.10	0.62	0.69	0.85	1.90	10852	1344	2	0	0	0	0	logfile
✔	6NBF	0410	2023-02-19	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	8.85	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.58	0.0	0.04	13.98	0.00	2.136	6.62	1.83	1.9	98.1	0.0	0.75	1.19	0.54	0.75	2.26	9424	1148	7	0	10	0	0	logfile
✔	6Z3Z	11067	2023-02-17	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.96	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.005	0.87	0.0	0.05	16.06	0.00	2.088	21.43	0.62	8.6	91.4	0.0	-0.21	0.70	0.64	0.73	0.82	6115	769	2	0	0	0	0	logfile
✔	7oR0	13036	2023-02-23	2021-06-04	2.64	3.23	2.80	3.0	0.011	1.06	0.0	0.35	13.24	0.01	2.217	2.61	1.15	5.4	94.2	0.3	-1.99	0.72	0.85	3.40	3.0	0.002	0.54	0.0	0.04	14.74	0.00	2.270	3.31	1.72	3.8	96.2	0.0	1.57	1.12	0.71	0.85	2.78	19869	2384	16	0	33	52	0	logfile
✔	6QM4	4587	2023-02-19	2019-02-01	3.8	3.88	3.83	3.8	0.007	0.99	0.0	0.05	15.63	0.01	2.242	3.99	0.00	4.8	95.2	0.0	-5.94	0.61	0.79	1.31	3.8	0.005	0.76	0.0	0.04	17.48	0.00	2.142	11.27	0.36	5.1	94.9	0.0	0.33	0.70	0.64	0.80	1.45	10580	1308	2	0	0	0	0	logfile
✔	6SJB	10214	2023-02-24	2019-08-13	3.7	3.91	—	3.7	0.003	0.58	0.0	0.04	13.36	0.01	2.227	4.42	2.57	2.3	97.7	0.0	-3.60	0.82	0.81	1.93	3.7	0.005	0.70	0.0	0.04	16.64	0.00	2.059	13.13	0.41	4.3	95.7	0.0	0.64	2.02	0.84	0.85	1.84	24115	2847	4	68	0	0	0	logfile
✔	6K4M	9915	2023-02-27	2019-05-24	4.5	7.82	—	7.8	0.006	1.01	0.0	0.05	17.74	0.00	2.258	13.35	0.54	1.8	98.2	0.0	-4.61	0.68	0.84	—	7.8	0.004	0.90	0.0	0.04	15.28	0.00	2.080	24.55	0.15	2.6	97.4	0.0	-0.40	1.59	0.70	0.86	—	31508	3790	48	0	36	0	0	logfile
✔	7S37	24818	2023-02-19	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.70	0.0	0.04	16.14	0.01	2.116	15.43	0.54	3.3	96.7	0.0	0.14	1.48	0.77	0.67	0.49	9392	1033	2	46	0	0	0	logfile
✔	7CR1	30444	2023-02-18	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile

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