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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BG9 | 12174 | 2023-02-21 | 2021-01-06 | 3.8 | 3.88 | — | 3.7 | 0.013 | 1.64 | 6.0 | 0.11 | 17.68 | 0.01 | 1.518 | 7.91 | 0.75 | 12.0 | 86.5 | 1.6 | -5.05 | 0.81 | 0.82 | 2.36 | 3.6 | 0.002 | 0.66 | 0.0 | 0.03 | 17.72 | 0.01 | 2.055 | 9.99 | 0.11 | 6.2 | 93.8 | 0.0 | -0.56 | 1.80 | 0.80 | 0.78 | 1.65 | 14233 | 1085 | 5 | 262 | 0 | 0 | 0 | logfile |
✔ | 6Z3Y | 11066 | 2023-02-17 | 2020-05-22 | 3.51 | 3.78 | 3.53 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 11.75 | 0.00 | 2.269 | 9.32 | 1.68 | 5.6 | 94.4 | 0.0 | 0.09 | 0.59 | 0.70 | 0.69 | 3.6 | 0.003 | 0.83 | 0.0 | 0.05 | 14.87 | 0.00 | 2.036 | 17.43 | 0.31 | 8.8 | 91.2 | 0.0 | -0.62 | 0.72 | 0.59 | 0.71 | 0.99 | 6131 | 771 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JLF | 8163 | 2023-02-21 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.21 | 0.00 | 1.982 | 12.28 | 0.52 | 3.4 | 96.3 | 0.3 | 0.12 | 1.43 | 0.68 | 0.83 | 1.85 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 6QMB | 4594 | 2023-02-19 | 2019-02-01 | 3.6 | 3.74 | 3.74 | 3.7 | 0.008 | 0.87 | 0.0 | 0.05 | 14.68 | 0.01 | 2.284 | 3.90 | 0.00 | 3.6 | 96.4 | 0.0 | -3.44 | 0.75 | 0.84 | 2.36 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.39 | 0.00 | 2.177 | 8.74 | 0.26 | 3.4 | 96.6 | 0.0 | 1.46 | 1.17 | 0.75 | 0.83 | 1.46 | 10698 | 1322 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6B48 | 7052 | 2023-02-24 | 2017-09-25 | 3.6 | 3.85 | — | 3.9 | 0.007 | 0.98 | 1.0 | 0.06 | 11.90 | 0.01 | 2.223 | 6.03 | 0.10 | 12.1 | 87.8 | 0.1 | -4.93 | 0.73 | 0.79 | 2.55 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 14.86 | 0.00 | 2.213 | 13.10 | 0.46 | 10.3 | 89.7 | 0.0 | -1.92 | 1.06 | 0.73 | 0.79 | 1.64 | 22333 | 2976 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6W5U | 21548 | 2023-02-21 | 2020-03-13 | 3.9 | 3.97 | — | 3.9 | 0.011 | 1.50 | 4.0 | 0.16 | 17.07 | 0.01 | 1.741 | 63.46 | 6.82 | 8.5 | 90.5 | 1.0 | -2.76 | 0.61 | 0.76 | 1.73 | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 17.86 | 0.00 | 2.218 | 12.56 | 0.69 | 6.6 | 93.3 | 0.1 | -0.22 | 1.74 | 0.62 | 0.77 | 1.53 | 9474 | 1175 | 6 | 0 | 21 | 0 | 0 | logfile |
✔ | 7XQH | 33396 | 2023-02-19 | 2022-05-07 | 3.8 | 4.45 | 3.57 | 4.2 | 0.005 | 0.78 | 0.0 | 0.04 | 15.53 | 0.01 | 2.337 | 5.28 | 2.23 | 3.6 | 95.9 | 0.5 | -2.01 | 0.77 | 0.84 | 2.84 | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 16.77 | 0.00 | 2.164 | 7.87 | 1.02 | 2.6 | 96.9 | 0.5 | 2.57 | 1.49 | 0.77 | 0.84 | 2.06 | 9774 | 1200 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KVC | 23046 | 2023-02-24 | 2020-11-27 | 4.7 | 4.90 | — | 4.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.91 | 0.00 | 2.224 | 33.61 | 0.00 | 10.7 | 89.3 | 0.0 | -2.46 | 0.82 | 0.81 | — | 4.8 | 0.004 | 0.76 | 0.0 | 0.04 | 14.05 | 0.01 | 2.222 | 24.53 | 0.00 | 5.6 | 94.4 | 0.0 | -0.15 | 0.55 | 0.81 | 0.79 | — | 21920 | 2660 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V3G | 21036 | 2023-02-26 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.47 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 12.72 | 0.00 | 2.157 | 14.36 | 0.19 | 3.5 | 96.5 | 0.0 | -0.65 | 0.88 | 0.72 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VWX | 21425 | 2023-02-18 | 2020-02-20 | 3.1 | 3.47 | — | 3.5 | 0.011 | 1.29 | 0.0 | 0.05 | 22.59 | 0.01 | 2.200 | 11.67 | 15.83 | 8.1 | 91.5 | 0.4 | -4.41 | 0.63 | 0.83 | 1.16 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 18.50 | 0.00 | 2.141 | 8.32 | 0.63 | 6.8 | 93.2 | 0.0 | -1.03 | 0.65 | 0.65 | 0.84 | 1.97 | 7782 | 900 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7VBN | 31883 | 2023-02-26 | 2021-08-31 | 2.4 | 2.48 | — | 2.5 | 0.006 | 0.75 | 2.0 | 0.05 | 16.47 | 0.01 | 2.002 | 8.61 | 1.39 | 3.1 | 96.8 | 0.1 | 0.39 | 0.78 | 0.89 | 4.54 | 2.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.95 | 0.00 | 2.109 | 5.90 | 2.12 | 3.2 | 96.7 | 0.1 | 0.33 | 0.81 | 0.78 | 0.91 | 4.61 | 29042 | 3522 | 44 | 0 | 17 | 713 | 0 | logfile |
✔ | 6QM6 | 4589 | 2023-02-19 | 2019-02-01 | 3.7 | 3.81 | 3.67 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 14.34 | 0.01 | 2.338 | 4.35 | 0.00 | 3.3 | 96.7 | 0.0 | -6.02 | 0.69 | 0.85 | 2.46 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.28 | 0.00 | 2.140 | 8.14 | 0.35 | 3.4 | 96.6 | 0.0 | 1.10 | 0.62 | 0.69 | 0.85 | 1.90 | 10852 | 1344 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NBF | 0410 | 2023-02-19 | 2018-12-07 | 3.0 | 3.52 | — | 3.5 | 0.005 | 0.90 | 0.0 | 0.06 | 8.85 | 0.01 | 2.307 | 3.07 | 0.10 | 3.0 | 97.0 | 0.0 | -1.40 | 0.64 | 0.79 | 3.11 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 13.98 | 0.00 | 2.136 | 6.62 | 1.83 | 1.9 | 98.1 | 0.0 | 0.75 | 1.19 | 0.54 | 0.75 | 2.26 | 9424 | 1148 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6Z3Z | 11067 | 2023-02-17 | 2020-05-22 | 3.19 | 3.90 | — | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 13.78 | 0.00 | 2.198 | 8.96 | 0.31 | 6.4 | 93.6 | 0.0 | -0.26 | 0.62 | 0.69 | 0.75 | 3.7 | 0.005 | 0.87 | 0.0 | 0.05 | 16.06 | 0.00 | 2.088 | 21.43 | 0.62 | 8.6 | 91.4 | 0.0 | -0.21 | 0.70 | 0.64 | 0.73 | 0.82 | 6115 | 769 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oR0 | 13036 | 2023-02-23 | 2021-06-04 | 2.64 | 3.23 | 2.80 | 3.0 | 0.011 | 1.06 | 0.0 | 0.35 | 13.24 | 0.01 | 2.217 | 2.61 | 1.15 | 5.4 | 94.2 | 0.3 | -1.99 | 0.72 | 0.85 | 3.40 | 3.0 | 0.002 | 0.54 | 0.0 | 0.04 | 14.74 | 0.00 | 2.270 | 3.31 | 1.72 | 3.8 | 96.2 | 0.0 | 1.57 | 1.12 | 0.71 | 0.85 | 2.78 | 19869 | 2384 | 16 | 0 | 33 | 52 | 0 | logfile |
✔ | 6QM4 | 4587 | 2023-02-19 | 2019-02-01 | 3.8 | 3.88 | 3.83 | 3.8 | 0.007 | 0.99 | 0.0 | 0.05 | 15.63 | 0.01 | 2.242 | 3.99 | 0.00 | 4.8 | 95.2 | 0.0 | -5.94 | 0.61 | 0.79 | 1.31 | 3.8 | 0.005 | 0.76 | 0.0 | 0.04 | 17.48 | 0.00 | 2.142 | 11.27 | 0.36 | 5.1 | 94.9 | 0.0 | 0.33 | 0.70 | 0.64 | 0.80 | 1.45 | 10580 | 1308 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJB | 10214 | 2023-02-24 | 2019-08-13 | 3.7 | 3.91 | — | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.36 | 0.01 | 2.227 | 4.42 | 2.57 | 2.3 | 97.7 | 0.0 | -3.60 | 0.82 | 0.81 | 1.93 | 3.7 | 0.005 | 0.70 | 0.0 | 0.04 | 16.64 | 0.00 | 2.059 | 13.13 | 0.41 | 4.3 | 95.7 | 0.0 | 0.64 | 2.02 | 0.84 | 0.85 | 1.84 | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✔ | 6K4M | 9915 | 2023-02-27 | 2019-05-24 | 4.5 | 7.82 | — | 7.8 | 0.006 | 1.01 | 0.0 | 0.05 | 17.74 | 0.00 | 2.258 | 13.35 | 0.54 | 1.8 | 98.2 | 0.0 | -4.61 | 0.68 | 0.84 | — | 7.8 | 0.004 | 0.90 | 0.0 | 0.04 | 15.28 | 0.00 | 2.080 | 24.55 | 0.15 | 2.6 | 97.4 | 0.0 | -0.40 | 1.59 | 0.70 | 0.86 | — | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 7S37 | 24818 | 2023-02-19 | 2021-09-04 | 3.2 | 3.10 | 3.27 | 2.3 | 0.006 | 1.04 | 0.0 | 0.05 | 12.76 | 0.01 | 2.211 | 4.66 | 0.11 | 3.7 | 96.3 | 0.0 | -1.48 | 0.74 | 0.62 | 0.31 | 2.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.14 | 0.01 | 2.116 | 15.43 | 0.54 | 3.3 | 96.7 | 0.0 | 0.14 | 1.48 | 0.77 | 0.67 | 0.49 | 9392 | 1033 | 2 | 46 | 0 | 0 | 0 | logfile |
✔ | 7CR1 | 30444 | 2023-02-18 | 2020-08-12 | 3.4 | 3.42 | — | 3.5 | 0.012 | 0.73 | 0.0 | 0.04 | 14.92 | 0.00 | 2.185 | 26.22 | 0.00 | 4.1 | 95.9 | 0.0 | -2.00 | 0.59 | 0.82 | 3.14 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 16.48 | 0.00 | 2.133 | 7.37 | 0.60 | 2.2 | 97.8 | 0.0 | 2.94 | 1.18 | 0.58 | 0.81 | 1.83 | 8220 | 1000 | 8 | 0 | 4 | 0 | 0 | logfile |