Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oZP	13131	2023-04-20	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.71	0.0	0.05	16.72	0.00	2.095	15.96	0.33	3.8	96.2	0.0	0.23	0.98	0.83	0.79	1.29	54330	6774	32	0	10	0	0	logfile
✔	6XLH	22244	2023-04-22	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✘	7XL3	33271	2023-04-27	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.77	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25700	3480	8	0	3	0	0	logfile
✔	6PCH	20300	2023-04-27	2019-06-17	2.9	3.23	—	3.1	0.005	0.40	0.0	0.02	12.74	0.03	1.702	3.90	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.005	0.75	0.0	0.04	15.49	0.01	1.995	11.55	5.52	8.1	91.7	0.2	-2.21	0.50	0.63	0.83	1.98	72134	964	8	3015	1	0	0	logfile
✔	7oo8	13007	2023-04-23	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.80	0.00	2.290	9.85	0.20	1.2	98.8	0.0	2.54	0.44	0.65	0.79	2.22	13923	1827	7	0	0	0	0	logfile
✔	7XMR	33302	2023-04-20	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.81	0.00	2.142	12.96	0.29	4.1	95.9	0.0	0.09	0.66	0.59	0.74	1.37	6611	871	5	0	0	0	0	logfile
✔	6PCS	20306	2023-04-27	2019-06-18	2.8	3.17	—	3.0	0.005	0.40	0.0	0.02	12.69	0.03	1.658	3.31	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.72	0.0	0.04	15.09	0.01	1.964	8.80	4.06	7.2	92.5	0.3	-1.60	1.27	0.67	0.89	3.52	72169	967	8	3015	1	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	6HD5	0201	2023-04-21	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7PGS	13394	2023-04-24	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.003	0.54	0.0	0.03	13.21	0.00	1.871	6.13	0.08	3.3	96.7	0.0	1.64	0.74	0.82	0.81	1.41	67202	4210	2	0	1	0	33807	logfile
✔	6J2Q	9771	2023-04-19	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	7oDS	12846	2023-04-20	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.26	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.007	0.85	0.0	0.05	15.09	0.01	1.757	13.49	0.41	4.0	96.0	0.0	-0.12	1.70	0.80	0.80	2.27	108339	9371	67	1487	132	0	0	logfile
✔	7RZQ	24774	2023-04-19	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7LH3	23335	2023-04-21	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7RZR	24775	2023-04-19	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	6ZGG	11205	2023-04-27	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✔	6W18	21503	2023-04-22	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.37	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7oJN	12956	2023-04-24	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.23	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.90	0.00	2.095	5.50	1.53	5.0	95.0	0.0	0.73	2.62	0.91	0.90	3.01	16991	2010	6	39	7	0	0	logfile
✔	7WKD	32565	2023-04-24	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.0	0.017	0.79	0.0	0.04	14.70	0.01	1.891	15.45	0.42	3.8	96.2	0.0	0.29	1.05	0.72	0.75	2.56	17515	1120	6	0	0	0	8712	logfile
✔	7oDR	12845	2023-04-19	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.70	0.0	0.04	15.27	0.01	1.900	10.20	2.30	2.0	98.0	0.0	0.89	1.26	0.76	0.84	2.70	107464	9244	68	1489	135	0	0	logfile

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