Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7XL3	33271	2022-12-18	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.81	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25700	3480	8	0	3	0	0	logfile
✔	6KRE	0757	2022-12-12	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.14	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.69	0.0	0.04	12.31	0.00	2.098	13.62	0.00	3.7	96.3	0.1	0.06	1.83	0.67	0.65	—	60321	7922	16	0	0	0	0	logfile
✔	7Xo0	33332	2022-12-11	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.006	0.56	0.0	0.06	17.26	0.00	2.220	6.29	2.33	10.3	89.7	0.0	-3.10	0.38	0.47	0.88	7.05	2550	372	6	0	0	0	0	logfile
✔	7MVY	24058	2022-12-15	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.31	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.67	0.0	0.04	14.14	0.00	1.958	13.67	1.65	3.9	96.1	0.0	0.95	1.65	0.76	0.74	2.24	26555	1694	2	0	0	0	13337	logfile
✔	8AP8	15561	2022-12-12	2022-08-09	3.7	3.98	3.47	3.8	0.002	0.39	0.0	0.04	8.11	0.00	2.139	2.40	0.31	1.6	98.4	0.0	2.44	0.72	0.82	1.61	3.8	0.003	0.52	0.0	0.04	13.65	0.00	2.083	5.88	0.16	3.2	96.8	0.0	2.21	1.18	0.73	0.83	1.53	12083	767	5	0	0	0	6098	logfile
✔	7oZP	13131	2022-12-11	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.78	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.73	0.0	0.05	16.68	0.00	2.047	16.77	0.46	4.0	96.0	0.0	0.19	0.98	0.83	0.79	1.31	54330	6774	32	0	10	0	0	logfile
✔	7oDE	12826	2022-12-16	2021-04-29	2.84	2.98	2.78	2.9	0.003	0.39	0.0	0.03	13.11	0.01	1.949	3.04	3.32	2.0	98.0	0.0	-0.12	0.82	0.80	3.61	2.9	0.005	0.57	0.0	0.04	14.39	0.00	1.890	5.83	2.35	3.3	96.7	0.0	-0.06	0.54	0.85	0.84	3.38	92524	1761	16	1990	0	0	35996	logfile
✔	6XGC	22180	2022-12-13	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.15	0.00	2.216	11.51	0.11	3.4	96.6	0.0	0.23	1.32	0.81	0.82	—	17040	2157	21	0	21	0	0	logfile
✔	6NF8	9362	2022-12-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.80	0.00	2.025	13.28	0.31	5.8	94.2	0.0	-0.26	2.60	0.84	0.79	1.18	65776	5509	32	952	147	0	0	logfile
✔	6HD5	0201	2022-12-12	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	11.92	0.00	2.175	17.10	0.00	5.1	94.8	0.1	-0.25	2.04	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	7VXC	32175	2022-12-21	2021-11-12	3.9	4.21	—	4.1	0.002	0.40	0.0	0.04	7.11	0.00	2.022	12.45	0.00	4.2	95.8	0.0	-1.96	0.63	0.62	0.87	4.1	0.003	0.61	0.0	0.04	13.91	0.00	1.808	36.93	0.36	5.2	94.7	0.1	-0.23	1.71	0.68	0.73	1.13	46264	3801	4	0	0	0	16332	logfile
✔	7QNB	14073	2022-12-13	2021-12-20	3.1	3.62	—	3.3	0.002	0.40	0.0	0.04	9.33	0.00	2.241	5.57	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.62	0.0	0.04	12.84	0.00	2.158	9.03	0.25	2.6	97.4	0.0	1.31	1.99	0.78	0.89	3.72	14793	1767	15	0	24	0	0	logfile
✔	7LH3	23335	2022-12-12	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.81	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.63	0.0	0.04	10.63	0.00	2.270	10.51	0.00	3.3	96.7	0.0	1.88	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7MFG	23816	2022-12-13	2021-04-09	3.87	4.47	3.92	4.0	0.002	0.40	0.0	0.04	9.39	0.00	1.993	5.51	0.22	4.2	95.8	0.0	0.42	0.86	0.84	2.35	4.1	0.003	0.68	0.0	0.04	12.94	0.00	2.046	11.10	0.27	5.4	94.6	0.0	-0.23	1.25	0.87	0.86	1.97	17013	2121	18	0	30	0	0	logfile
✔	7PGS	13394	2022-12-13	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.59	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.56	0.0	0.04	13.20	0.00	1.880	6.38	0.03	3.9	96.1	0.0	1.43	0.74	0.82	0.81	1.46	67202	4210	2	0	1	0	33807	logfile
✔	7EoS	31229	2022-12-15	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.57	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.69	0.0	0.04	12.69	0.00	2.135	14.87	0.11	6.3	93.6	0.1	-0.48	1.31	0.90	0.83	1.45	24600	3106	8	0	18	0	0	logfile
✔	7RZQ	24774	2022-12-11	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7oo8	13007	2022-12-13	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✔	7RZR	24775	2022-12-11	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7XMR	33302	2022-12-11	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.79	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.64	0.0	0.04	14.51	0.00	2.125	12.73	0.57	3.7	96.3	0.0	0.26	0.65	0.59	0.74	1.39	6611	871	5	0	0	0	0	logfile

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