Table showing results for July 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SAM	24952	2022-07-03	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	6XGC	22180	2022-07-04	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.006	0.76	0.0	0.05	11.55	0.00	2.105	14.11	0.00	5.4	94.6	0.0	-0.51	1.33	0.82	0.84	—	17040	2157	21	0	21	0	0	logfile
✔	6KRE	0757	2022-07-03	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.14	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.75	1.0	0.04	12.02	0.00	2.101	12.70	0.05	3.2	96.8	0.1	0.24	1.77	0.65	0.62	—	60321	7922	16	0	0	0	0	logfile
✔	6NF8	9362	2022-07-04	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.91	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile
✔	6KRD	0756	2022-07-03	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.90	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.52	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	6KS8	0760	2022-07-03	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.65	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✔	7oZP	13131	2022-07-03	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.78	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.009	0.95	2.0	0.05	16.67	0.01	1.544	21.89	0.20	3.3	96.7	0.0	0.24	0.93	0.83	0.78	1.28	54330	6774	32	0	10	0	0	logfile
✔	7oZo	13130	2022-07-03	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.68	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.004	0.73	0.0	0.05	16.76	0.01	2.113	15.84	0.38	3.6	96.4	0.0	-0.09	1.26	0.82	0.78	0.89	54330	6774	32	0	10	0	0	logfile
✔	6KS7	0759	2022-07-03	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.80	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.009	0.91	0.0	0.05	12.10	0.00	1.014	21.96	0.03	3.5	96.4	0.1	-0.25	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	7oo8	13007	2022-07-04	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✘	7QND	14075	2022-07-04	2021-12-20	3.4	3.55	—	3.4	0.002	0.40	0.0	0.04	7.68	0.00	1.229	5.00	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16810	1995	19	0	33	0	0	logfile
✔	7QNB	14073	2022-07-04	2021-12-20	3.1	3.62	—	3.3	0.002	0.40	0.0	0.04	9.33	0.00	2.241	5.57	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.65	0.0	0.04	12.91	0.00	2.134	8.56	0.38	2.4	97.6	0.0	1.24	2.14	0.78	0.89	3.66	14793	1767	15	0	24	0	0	logfile
✘	7oDT	12847	2022-07-03	2021-04-30	3.1	3.31	—	3.1	0.002	0.40	0.0	0.03	10.95	0.00	1.207	5.39	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110473	9585	71	1526	110	0	0	logfile
✘	7oDR	12845	2022-07-02	2021-04-30	2.9	3.11	—	3.0	0.002	0.40	0.0	0.03	11.06	0.00	1.208	5.13	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107464	9244	68	1489	135	0	0	logfile
✔	7PGS	13394	2022-07-04	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.59	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.57	0.0	0.04	13.25	0.00	1.886	6.43	0.16	4.0	95.9	0.0	1.36	0.74	0.82	0.81	1.49	67202	4210	2	0	1	0	33807	logfile
✔	7RZR	24775	2022-07-02	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	7EoS	31229	2022-07-05	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.57	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.004	0.71	0.0	0.04	12.91	0.00	2.114	15.89	0.27	6.9	93.1	0.1	-0.55	2.28	0.91	0.83	1.42	24600	3106	8	0	18	0	0	logfile
✔	7VXC	32175	2022-07-07	2021-11-12	3.9	4.21	—	4.1	0.002	0.40	0.0	0.04	7.11	0.00	2.022	12.45	0.00	4.2	95.8	0.0	-1.96	0.63	0.62	0.87	4.1	0.008	0.85	1.0	0.04	14.01	0.00	1.727	37.75	0.30	5.6	94.3	0.1	-0.77	1.70	0.67	0.73	1.15	46264	3801	4	0	0	0	16332	logfile
✔	7RZQ	24774	2022-07-02	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	6HD5	0201	2022-07-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile

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