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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6K9L | 9950 | 2024-03-21 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2024-03-16 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 22.50 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 28.52 | 0.01 | 1.951 | 72.85 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.98 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2024-03-17 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 21.03 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.007 | 1.02 | 0.0 | 0.05 | 25.19 | 0.01 | 1.900 | 45.40 | 4.54 | 22.7 | 76.1 | 1.3 | -5.20 | 2.37 | 0.80 | 0.67 | 0.25 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2024-03-12 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.10 | 0.00 | 2.093 | 12.74 | 0.00 | 3.6 | 96.4 | 0.1 | -0.22 | 1.82 | 0.64 | 0.64 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2024-03-13 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 17.57 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.76 | 0.00 | 2.098 | 13.26 | 1.83 | 5.2 | 94.7 | 0.1 | -0.39 | 1.96 | 0.85 | 0.85 | 1.35 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2024-03-10 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 16.35 | 0.00 | 2.270 | 6.46 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.003 | 0.50 | 0.0 | 0.04 | 17.22 | 0.00 | 2.142 | 11.42 | 2.14 | 2.1 | 97.9 | 0.0 | 0.75 | 0.56 | 0.90 | 0.86 | 1.97 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2024-03-12 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.04 | 12.16 | 0.00 | 2.062 | 17.17 | 0.03 | 4.1 | 95.8 | 0.1 | -0.34 | 1.89 | 0.75 | 0.69 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2024-03-11 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 5oAF | 3773 | 2024-03-18 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.91 | 0.00 | 2.114 | 15.64 | 0.00 | 5.0 | 94.9 | 0.1 | -0.93 | 3.58 | 0.73 | 0.74 | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7T4M | 25680 | 2024-03-23 | 2021-12-10 | 2.48 | 2.77 | 2.55 | 2.7 | 0.001 | 0.38 | 0.0 | 0.04 | 9.69 | 0.00 | 2.253 | 4.85 | 0.97 | 1.6 | 98.4 | 0.0 | 1.34 | 0.72 | 0.86 | 4.48 | 2.7 | 0.003 | 0.61 | 1.0 | 0.04 | 12.70 | 0.00 | 1.631 | 6.06 | 1.11 | 1.2 | 98.8 | 0.0 | 1.43 | 0.89 | 0.73 | 0.88 | 4.22 | 39054 | 4854 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2024-03-10 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.3 | 0.006 | 0.86 | 0.0 | 0.05 | 12.15 | 0.00 | 2.164 | 13.33 | 11.25 | 16.5 | 83.5 | 0.0 | -1.70 | 0.74 | 0.62 | 0.56 | 2.72 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T8C | 25744 | 2024-03-21 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 10.99 | 0.00 | 2.224 | 13.57 | 0.00 | 5.2 | 94.8 | 0.0 | 0.08 | 1.20 | 0.67 | 0.64 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2024-03-15 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 24.66 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.69 | 0.0 | 0.04 | 25.95 | 0.01 | 1.746 | 31.76 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.93 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7WoG | 32651 | 2024-03-10 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.72 | 0.0 | 0.04 | 10.77 | 0.00 | 2.076 | 19.52 | 0.00 | 12.4 | 87.6 | 0.0 | -2.57 | 0.92 | 0.54 | 0.54 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XMR | 33302 | 2024-03-11 | 2022-04-26 | 3.1 | 3.31 | 2.93 | 3.3 | 0.001 | 0.40 | 0.0 | 0.04 | 10.86 | 0.00 | 2.250 | 5.63 | 0.00 | 1.6 | 98.4 | 0.0 | -3.39 | 0.52 | 0.64 | 1.08 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.38 | 0.00 | 2.112 | 11.80 | 2.73 | 3.6 | 96.4 | 0.0 | 0.22 | 0.64 | 0.59 | 0.74 | 1.47 | 6611 | 871 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2024-03-11 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2024-03-24 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 11.33 | 0.01 | 1.844 | 23.01 | 0.00 | 16.5 | 82.9 | 0.6 | -3.97 | 1.95 | 0.72 | 0.73 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 8HR9 | 34964 | 2024-03-19 | 2022-12-15 | 3.03 | 3.12 | 3.15 | 3.0 | 0.002 | 0.47 | 0.0 | 0.04 | 15.46 | 0.00 | 1.989 | 10.51 | 0.05 | 3.3 | 96.7 | 0.0 | -0.66 | 0.74 | 0.78 | 1.85 | 3.1 | 0.002 | 0.51 | 0.0 | 0.04 | 16.93 | 0.00 | 2.090 | 12.03 | 1.71 | 3.2 | 96.8 | 0.0 | 0.15 | 1.10 | 0.75 | 0.81 | 1.54 | 93394 | 11678 | 24 | 0 | 10 | 0 | 0 | logfile |
✔ | 7QWR | 14192 | 2024-03-17 | 2022-01-25 | 2.9 | 2.44 | — | 2.9 | 0.002 | 0.47 | 0.0 | 0.03 | 22.87 | 0.00 | 2.054 | 7.58 | 0.72 | 5.1 | 94.8 | 0.1 | -0.61 | 0.48 | 0.71 | 2.26 | 2.7 | 0.008 | 0.94 | 0.0 | 0.05 | 24.15 | 0.01 | 1.795 | 9.20 | 6.93 | 7.3 | 92.6 | 0.1 | -1.29 | 1.42 | 0.53 | 0.82 | 2.98 | 134576 | 6621 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 7NVW | 12615 | 2024-03-19 | 2021-03-16 | 4.3 | 4.32 | 4.26 | 4.2 | 0.002 | 0.45 | 0.0 | 0.04 | 15.51 | 0.00 | 1.971 | 6.64 | 0.00 | 4.4 | 95.6 | 0.0 | 0.80 | 0.71 | 0.66 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.04 | 15.86 | 0.00 | 2.083 | 16.29 | 0.00 | 5.0 | 94.9 | 0.0 | -0.73 | 1.06 | 0.73 | 0.69 | — | 23647 | 2814 | 17 | 42 | 35 | 0 | 0 | logfile |