Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VXK	32182	2023-04-29	2021-11-12	3.7	4.06	—	3.9	0.002	0.50	0.0	0.04	7.67	0.00	2.235	7.48	0.00	3.8	96.1	0.1	-2.36	0.55	0.60	1.12	3.9	0.004	0.70	0.0	0.04	14.34	0.00	2.107	13.03	0.21	4.2	95.7	0.0	-0.14	1.67	0.62	0.74	1.33	30079	3814	4	0	0	0	0	logfile
✔	6Z3Y	11066	2023-04-20	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	7WKS	32568	2023-04-20	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.55	0.0	0.04	16.04	0.00	2.218	8.33	0.78	0.8	99.2	0.0	1.85	0.91	0.59	0.83	1.38	5874	754	2	0	0	0	0	logfile
✘	7QFQ	13947	2023-04-21	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✔	7TQV	26073	2023-04-24	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile
✔	8B1U	15805	2023-04-26	2022-09-12	3.8	3.92	3.70	3.8	0.002	0.51	0.0	0.04	12.03	0.00	2.172	5.81	1.51	1.1	98.9	0.0	-0.66	0.77	0.78	1.88	3.8	0.003	0.62	0.0	0.04	16.44	0.00	2.166	9.54	0.16	2.2	97.8	0.0	0.87	1.38	0.79	0.82	2.03	24127	2886	6	51	2	0	0	logfile
✔	7VAD	31837	2023-04-20	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.79	0.0	0.05	16.16	0.00	2.118	14.59	1.08	8.1	91.9	0.0	0.14	0.78	0.62	0.81	2.30	5697	743	3	0	0	0	0	logfile
✔	7CR3	30446	2023-04-23	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.003	0.88	0.0	0.04	16.74	0.00	2.172	16.93	0.42	3.4	96.6	0.0	0.98	2.01	0.60	0.72	1.15	15924	1968	8	0	0	0	0	logfile
✔	7VAG	31840	2023-04-20	2021-08-29	3.32	3.68	—	3.7	0.002	0.66	0.0	0.04	13.27	0.00	2.109	7.78	0.15	8.3	91.7	0.0	0.41	0.58	0.76	1.46	3.7	0.003	0.77	0.0	0.04	16.03	0.00	2.161	12.23	0.31	8.1	91.9	0.0	-0.04	1.36	0.55	0.77	1.83	5697	743	3	0	0	0	0	logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✔	6KS6	0758	2023-04-23	2019-08-23	2.99	3.11	—	3.1	0.002	0.49	0.0	0.04	8.47	0.00	2.071	8.81	0.01	3.4	96.4	0.2	-3.34	0.59	0.68	1.48	3.1	0.004	0.77	0.0	0.04	17.63	0.00	1.936	12.59	3.41	3.9	95.9	0.2	0.02	1.46	0.78	0.86	2.05	65514	8502	46	0	46	14	0	logfile
✔	7VXB	32174	2023-04-29	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.33	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.007	0.88	0.0	0.05	14.42	0.01	1.887	22.12	0.75	4.9	95.0	0.1	-0.50	1.20	0.67	0.76	0.98	29888	3795	4	0	0	0	0	logfile
✔	7SJ4	25153	2023-04-20	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.60	0.0	0.04	14.86	0.00	2.263	6.56	1.86	1.9	98.1	0.0	1.57	3.30	0.59	0.71	2.52	3909	481	4	0	0	24	0	logfile
✔	7TJ2	25915	2023-04-24	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	8.62	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.004	0.55	0.0	0.04	13.47	0.00	2.193	6.19	0.40	3.2	96.8	0.0	-0.17	2.83	0.71	0.82	3.42	17083	2007	8	62	0	0	0	logfile
✔	7P1i	13161	2023-04-20	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.3	0.004	1.18	1.0	0.05	14.98	0.00	2.140	21.37	0.14	6.1	93.9	0.0	0.34	0.96	0.57	0.72	0.46	6644	884	2	0	0	0	0	logfile
✘	7VGS	31978	2023-04-23	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.230	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9700	1254	6	0	0	0	0	logfile
✔	8H8C	34542	2023-04-24	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.003	0.67	0.0	0.04	16.15	0.00	2.090	9.51	0.22	13.4	86.6	0.0	-3.43	0.70	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	7ZS5	14926	2023-04-26	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	16.11	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.008	0.84	0.0	0.05	17.43	0.01	1.851	20.60	1.03	9.6	90.0	0.4	-1.91	0.41	0.86	0.82	1.68	127849	6416	50	3603	24	0	0	logfile
✔	7P1J	13162	2023-04-20	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	7XQG	33395	2023-04-21	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	11.19	0.00	2.268	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.78	0.0	0.04	15.05	0.00	2.291	8.32	0.19	3.6	96.4	0.0	2.37	0.77	0.80	0.85	1.40	10206	1206	12	0	12	0	0	logfile

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