Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V3D	21033	2021-08-12	2019-11-25	2.95	3.39	—	3.2	0.002	0.49	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.008	0.77	0.0	0.04	16.19	0.01	1.786	8.01	3.57	5.4	94.5	0.1	-0.90	1.21	0.87	0.90	2.60	89040	3117	45	3007	108	231	0	logfile
✔	6U6D	20663	2021-08-08	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.002	0.51	0.0	0.04	15.61	0.00	2.146	6.59	0.27	3.4	96.6	0.0	0.00	0.53	0.82	0.84	2.26	16770	2156	10	0	2	0	0	logfile
✔	6YV1	10940	2021-08-07	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	3.7	0.003	0.67	0.0	0.04	14.42	0.00	2.288	7.04	0.00	2.6	97.4	0.0	1.10	0.66	0.51	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	7JGE	22324	2021-08-09	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	13.80	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.002	0.53	0.0	0.05	15.79	0.00	2.035	16.21	0.00	6.5	93.5	0.0	0.46	1.23	0.60	0.65	—	20315	1437	1	0	0	0	8508	logfile
✔	7NDC	12283	2021-08-10	2021-01-30	4.1	4.42	—	4.2	0.002	0.52	0.0	0.04	11.62	0.00	2.118	3.46	0.37	3.9	96.1	0.0	-0.43	0.83	0.75	—	4.2	0.004	0.65	0.0	0.04	12.15	0.00	2.066	12.64	0.00	5.3	94.7	0.0	-0.11	1.83	0.82	0.72	—	30645	3852	27	0	54	0	0	logfile
✔	6TFK	10493	2021-08-11	2019-11-14	2.9	3.06	2.94	3.1	0.002	0.47	0.0	0.04	9.64	0.00	1.917	7.17	0.24	9.1	90.9	0.0	-2.49	0.72	0.77	2.62	3.0	0.012	0.99	0.0	0.04	14.04	0.00	1.923	8.72	1.34	7.3	92.5	0.1	-0.69	0.75	0.75	0.80	2.37	43237	2724	5	0	1	0	21544	logfile
✔	6Wi9	21683	2021-08-07	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.31	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.72	0.0	0.04	13.93	0.00	2.083	15.04	0.00	6.6	93.4	0.0	-0.78	0.84	0.79	0.79	—	8550	1108	6	0	0	0	0	logfile
✔	6TFJ	10492	2021-08-11	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.70	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.004	0.63	0.0	0.04	15.16	0.00	1.944	10.57	1.46	7.9	92.0	0.1	-0.95	1.35	0.72	0.77	2.15	48340	3058	4	0	0	0	24098	logfile
✔	6ZQi	11364	2021-08-07	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.73	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.005	0.81	0.0	0.05	15.79	0.00	2.127	12.67	0.93	5.5	94.5	0.0	-0.60	0.76	0.69	0.80	1.15	5032	655	4	0	1	0	0	logfile
✔	6ZQJ	11366	2021-08-08	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.29	0.00	2.286	6.10	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.005	0.90	0.0	0.05	13.82	0.00	2.115	14.07	0.06	6.7	93.3	0.0	-1.24	2.05	0.70	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	6W18	21503	2021-08-08	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.67	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.002	0.68	0.0	0.04	12.68	0.00	2.168	8.57	0.09	6.3	93.7	0.0	-1.40	1.30	0.76	0.70	—	13151	1837	9	0	3	0	0	logfile
✔	6XMF	22257	2021-08-07	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.51	0.00	2.151	14.52	0.20	9.8	90.2	0.0	-0.59	1.15	0.72	0.76	3.01	7382	627	3	109	1	0	0	logfile
✔	7JPT	22422	2021-08-08	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.51	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.50	0.00	2.231	11.39	0.30	8.0	92.0	0.0	-2.25	0.60	0.71	0.76	2.66	10220	1327	3	0	5	0	0	logfile
✔	7DR6	30824	2021-08-09	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	9.99	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.008	0.91	1.0	0.05	13.52	0.01	1.838	19.15	0.03	4.0	96.0	0.0	0.06	2.31	0.74	0.74	—	59957	7661	35	0	0	0	0	logfile
✔	7ND3	12274	2021-08-09	2021-01-30	3.7	3.99	—	3.8	0.002	0.51	0.0	0.04	11.23	0.00	2.159	3.47	0.64	3.7	96.2	0.1	-0.43	0.82	0.83	1.98	3.8	0.004	0.65	0.0	0.04	13.62	0.00	2.116	9.62	0.19	4.2	95.7	0.1	0.46	0.75	0.84	0.84	1.87	25050	3194	19	0	49	0	0	logfile
✔	7C7A	30297	2021-08-09	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.77	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.006	0.83	1.0	0.04	16.53	0.01	1.850	12.72	2.61	6.4	93.5	0.1	-0.28	0.94	0.85	0.82	1.31	27500	2519	16	339	4	0	0	logfile
✔	6VRL	21370	2021-08-07	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.55	0.0	0.04	14.02	0.00	2.159	10.49	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.015	1.55	0.0	0.04	16.27	0.01	2.049	22.45	0.31	7.3	92.7	0.0	-1.28	0.77	0.50	0.70	1.48	6141	764	4	0	4	0	0	logfile
✔	6VRH	21368	2021-08-07	2020-02-07	3.3	3.68	3.56	3.6	0.002	0.53	0.0	0.04	12.92	0.00	2.212	9.75	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.59	0.0	0.04	15.08	0.00	2.144	10.49	0.31	5.7	94.3	0.0	-0.72	0.59	0.52	0.76	1.60	6142	764	4	0	5	0	0	logfile
✔	6LN9	0928	2021-08-07	2019-12-28	3.4	3.61	3.06	3.6	0.002	0.51	0.0	0.04	12.32	0.00	2.075	7.76	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.011	1.10	0.0	0.04	14.98	0.01	1.955	11.74	0.24	4.8	95.2	0.0	-0.37	0.51	0.63	0.75	1.07	7612	987	1	0	2	0	0	logfile
✔	6ZoJ	11320	2021-08-11	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.34	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.006	0.67	0.0	0.04	16.12	0.01	1.205	5.49	2.71	3.4	96.6	0.0	0.49	2.45	0.82	0.88	3.40	75783	4914	45	1704	169	0	0	logfile

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