Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	6ZQi	11364	2021-12-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.93	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.66	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	7C77	30294	2021-12-01	2020-05-23	3.3	3.60	—	3.8	0.002	0.62	0.0	0.04	16.23	0.00	2.209	9.34	1.88	5.0	94.9	0.1	-2.63	0.58	0.75	1.54	3.8	0.004	0.78	0.0	0.04	17.29	0.01	2.155	12.51	0.66	5.4	94.6	0.0	-0.71	0.55	0.55	0.77	1.97	9762	1183	9	0	20	0	0	logfile
✔	7C76	30293	2021-12-01	2020-05-23	3.4	3.82	—	3.7	0.002	0.56	0.0	0.04	16.02	0.00	2.219	9.46	1.91	5.8	94.1	0.1	-2.76	0.62	0.76	1.72	3.7	0.006	0.83	0.0	0.05	17.24	0.01	2.084	18.00	0.57	6.3	93.6	0.1	-0.89	1.38	0.60	0.80	2.25	9762	1174	11	0	25	0	0	logfile
✔	6WB2	21585	2021-12-01	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.72	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.56	0.0	0.04	12.04	0.00	2.149	10.01	0.17	3.6	96.4	0.0	-0.22	0.62	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	7F1R	31423	2021-12-01	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	7.84	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.69	0.0	0.04	15.18	0.01	2.167	12.73	3.36	3.2	96.8	0.0	0.48	0.71	0.63	0.78	2.29	6621	894	4	0	0	0	0	logfile
✔	6WFQ	21652	2021-12-01	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.91	0.0	0.05	19.24	0.01	2.157	23.46	0.27	6.5	93.5	0.0	-0.40	1.01	0.85	0.81	0.54	4164	447	4	30	0	0	0	logfile
✔	7C8K	30306	2021-12-01	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.1	0.003	0.53	0.0	0.04	15.51	0.00	2.220	7.11	0.20	3.9	96.1	0.0	1.51	0.53	0.84	0.81	3.09	4853	596	3	0	6	0	0	logfile
✔	7LZE	23605	2021-12-01	2021-03-09	3.23	3.26	3.28	3.6	0.002	0.42	0.0	0.04	13.80	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.6	0.004	0.56	0.0	0.04	14.83	0.00	2.158	3.40	0.00	7.3	92.7	0.0	-0.75	1.12	0.78	0.85	2.79	7842	1011	9	0	9	0	0	logfile
✔	6WB0	21583	2021-12-01	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.83	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.003	0.60	0.0	0.04	12.45	0.00	2.138	10.03	0.00	4.7	95.3	0.0	-1.45	1.28	0.81	0.78	—	8518	948	4	77	0	0	0	logfile
✔	7R89	24312	2021-12-02	2021-06-26	2.6	2.92	—	2.9	0.002	0.56	0.0	0.04	14.72	0.00	2.221	7.78	3.39	3.8	96.2	0.0	-1.46	0.71	0.86	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10531	1332	5	0	1	0	0	logfile
✔	7R88	24311	2021-12-02	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.25	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10787	1368	4	0	0	0	0	logfile
✔	7KAL	22774	2021-12-02	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.74	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10789	1429	7	0	0	0	0	logfile
✔	6W1N	21513	2021-12-01	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.43	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.77	0.0	0.04	14.18	0.00	2.104	11.97	0.22	3.1	96.9	0.0	0.83	0.77	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	7EW4	31347	2021-12-01	2021-05-24	3.2	3.38	—	3.4	0.002	0.49	0.0	0.14	13.98	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.011	1.16	1.0	0.04	15.44	0.01	2.009	11.72	0.10	3.0	97.0	0.0	0.56	0.43	0.68	0.78	2.40	8929	1145	6	0	3	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7AJQ	11806	2021-12-01	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.007	1.24	0.0	0.05	15.93	0.01	1.522	27.45	0.54	4.0	95.9	0.1	0.96	0.85	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	7JPT	22422	2021-12-02	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.51	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.48	0.00	2.182	12.51	0.10	8.4	91.6	0.0	-2.25	0.56	0.73	0.77	2.68	10220	1327	3	0	5	0	0	logfile
✔	7oDS	12846	2021-12-01	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.01	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.77	0.0	0.04	14.79	0.01	1.527	11.50	0.28	3.0	97.0	0.0	0.37	1.69	0.79	0.79	2.22	108339	9371	67	1487	132	0	0	logfile
✔	7PMW	13542	2021-12-01	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.003	0.55	0.0	0.04	11.56	0.00	2.047	10.15	0.00	3.2	96.8	0.0	0.68	1.20	0.58	0.76	—	10153	643	2	0	0	0	5123	logfile

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