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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7D59 | 30578 | 2022-05-17 | 2020-09-25 | 3.1 | 3.84 | — | 3.5 | 0.002 | 0.61 | 0.0 | 0.54 | 14.30 | 0.00 | 2.196 | 7.62 | 0.00 | 4.5 | 95.4 | 0.1 | -3.52 | 0.85 | 0.79 | 0.90 | 3.5 | 0.006 | 1.10 | 0.0 | 0.17 | 16.20 | 0.00 | 2.123 | 11.58 | 0.34 | 5.7 | 94.3 | 0.0 | -0.96 | 0.85 | 0.87 | 0.85 | 1.62 | 39898 | 5010 | 23 | 0 | 8 | 0 | 0 | logfile |
✔ | 7NDC | 12283 | 2022-05-16 | 2021-01-30 | 4.1 | 4.42 | — | 4.2 | 0.002 | 0.52 | 0.0 | 0.04 | 11.62 | 0.00 | 2.118 | 3.67 | 0.37 | 3.9 | 96.1 | 0.0 | -0.43 | 0.83 | 0.75 | — | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 12.14 | 0.00 | 2.100 | 9.52 | 0.03 | 3.6 | 96.4 | 0.0 | 0.30 | 1.80 | 0.85 | 0.79 | — | 30645 | 3852 | 27 | 0 | 54 | 0 | 0 | logfile |
✔ | 7JiC | 22344 | 2022-05-12 | 2020-07-23 | 3.8 | 4.28 | 3.86 | 4.1 | 0.002 | 0.45 | 0.0 | 0.04 | 9.26 | 0.00 | 2.241 | 5.84 | 0.00 | 4.4 | 95.6 | 0.0 | -1.97 | 0.68 | 0.80 | 2.30 | 4.1 | 0.008 | 1.09 | 0.0 | 0.04 | 14.28 | 0.00 | 2.219 | 11.50 | 0.17 | 4.0 | 96.0 | 0.0 | 0.43 | 2.00 | 0.68 | 0.81 | 2.60 | 5980 | 842 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0Y | 11972 | 2022-05-17 | 2020-11-23 | 3.6 | 3.87 | 3.41 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 15.19 | 0.00 | 1.954 | 4.48 | 0.02 | 2.1 | 97.9 | 0.0 | -2.96 | 0.75 | 0.78 | 2.05 | 3.7 | 0.006 | 0.76 | 1.0 | 0.04 | 17.28 | 0.00 | 2.099 | 12.40 | 0.14 | 3.2 | 96.8 | 0.0 | -0.18 | 1.23 | 0.75 | 0.78 | 1.75 | 43792 | 4745 | 31 | 274 | 9 | 0 | 0 | logfile |
✔ | 6XAS | 22114 | 2022-05-18 | 2020-06-04 | 3.8 | 3.01 | 3.14 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 10.96 | 0.00 | 1.961 | 5.01 | 1.49 | 2.2 | 97.8 | 0.0 | -2.00 | 0.62 | 0.55 | 1.72 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 14.63 | 0.00 | 1.805 | 9.32 | 0.20 | 4.4 | 95.6 | 0.0 | -0.24 | 0.76 | 0.61 | 0.54 | 1.64 | 46887 | 5804 | 16 | 73 | 3 | 0 | 0 | logfile |
✔ | 6W6K | 21558 | 2022-05-18 | 2020-03-17 | 3.6 | 3.84 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 14.66 | 0.00 | 2.113 | 10.39 | 0.00 | 6.9 | 93.1 | 0.0 | -4.28 | 0.70 | 0.59 | 0.52 | 3.7 | 0.007 | 0.92 | 1.0 | 0.04 | 17.11 | 0.01 | 1.510 | 21.81 | 0.44 | 12.4 | 87.6 | 0.1 | -3.12 | 0.82 | 0.74 | 0.67 | 0.42 | 46934 | 1873 | 19 | 1534 | 1 | 0 | 0 | logfile |
✔ | 6X87 | 22089 | 2022-05-17 | 2020-06-01 | 3.2 | 3.56 | — | 3.5 | 0.002 | 0.52 | 0.0 | 0.04 | 11.69 | 0.01 | 2.262 | 5.90 | 0.11 | 4.2 | 95.8 | 0.0 | -1.72 | 0.60 | 0.62 | 2.46 | 3.5 | 0.008 | 0.87 | 1.0 | 0.04 | 14.89 | 0.01 | 2.096 | 11.35 | 0.38 | 2.7 | 97.3 | 0.0 | -0.29 | 0.72 | 0.68 | 0.77 | 2.78 | 23173 | 3085 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W77 | 21569 | 2022-05-18 | 2020-03-18 | 3.6 | 3.44 | — | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 14.96 | 0.00 | 2.084 | 9.36 | 0.12 | 6.1 | 93.7 | 0.2 | -3.22 | 0.73 | 0.67 | 0.91 | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 16.22 | 0.01 | 1.738 | 15.78 | 0.43 | 9.8 | 90.0 | 0.2 | -1.80 | 1.76 | 0.76 | 0.70 | 0.99 | 47940 | 1949 | 18 | 1519 | 0 | 0 | 0 | logfile |
✔ | 6W7W | 21573 | 2022-05-15 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 15.50 | 0.00 | 2.156 | 10.72 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.007 | 0.80 | 0.0 | 0.04 | 17.06 | 0.01 | 2.075 | 26.17 | 1.29 | 7.7 | 92.3 | 0.0 | -1.52 | 0.61 | 0.92 | 0.85 | 1.34 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 6W7N | 21572 | 2022-05-17 | 2020-03-19 | 3.4 | 3.72 | — | 3.6 | 0.002 | 0.46 | 0.0 | 0.03 | 14.05 | 0.00 | 1.907 | 8.15 | 0.08 | 8.2 | 91.5 | 0.3 | -4.03 | 0.78 | 0.78 | 1.44 | 3.6 | 0.007 | 0.73 | 0.0 | 0.04 | 15.89 | 0.01 | 2.082 | 12.57 | 1.30 | 12.0 | 87.7 | 0.4 | -2.51 | 1.25 | 0.79 | 0.79 | 1.50 | 42287 | 1660 | 15 | 1372 | 0 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2022-05-12 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 16.06 | 0.00 | 2.187 | 10.84 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.04 | 18.71 | 0.01 | 1.998 | 43.36 | 0.20 | 10.7 | 89.3 | 0.0 | -2.06 | 0.75 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 7ND5 | 12276 | 2022-05-15 | 2021-01-30 | 3.4 | 3.66 | — | 3.5 | 0.002 | 0.52 | 0.0 | 0.04 | 11.27 | 0.00 | 2.167 | 4.27 | 0.32 | 3.6 | 96.3 | 0.0 | -0.49 | 0.77 | 0.73 | 1.55 | 3.5 | 0.008 | 0.84 | 1.0 | 0.05 | 13.89 | 0.00 | 2.144 | 9.90 | 0.32 | 3.8 | 96.1 | 0.1 | 0.23 | 0.71 | 0.79 | 0.78 | 1.78 | 26710 | 3406 | 19 | 0 | 49 | 0 | 0 | logfile |
✔ | 6VWN | 21422 | 2022-05-17 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 14.91 | 0.00 | 1.951 | 7.15 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 16.17 | 0.00 | 1.889 | 15.68 | 0.51 | 6.1 | 93.9 | 0.0 | -1.23 | 1.21 | 0.84 | 0.86 | 1.05 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 7NDB | 12282 | 2022-05-15 | 2021-01-30 | 4.6 | 5.10 | — | 4.9 | 0.002 | 0.52 | 0.0 | 0.04 | 11.41 | 0.00 | 2.174 | 5.19 | 0.72 | 4.5 | 95.3 | 0.1 | -0.78 | 0.82 | 0.72 | — | 4.9 | 0.003 | 0.68 | 0.0 | 0.05 | 12.09 | 0.00 | 2.116 | 16.17 | 0.03 | 4.2 | 95.7 | 0.0 | -0.42 | 0.95 | 0.84 | 0.77 | — | 27184 | 3460 | 19 | 0 | 50 | 0 | 0 | logfile |
✔ | 6ZQi | 11364 | 2022-05-12 | 2020-07-09 | 3.8 | 4.13 | 3.63 | 4.1 | 0.002 | 0.56 | 0.0 | 0.04 | 12.40 | 0.00 | 2.336 | 6.43 | 1.12 | 3.1 | 96.9 | 0.0 | -2.14 | 0.67 | 0.78 | 0.85 | 4.1 | 0.003 | 0.79 | 0.0 | 0.05 | 15.51 | 0.00 | 2.217 | 11.86 | 0.93 | 4.5 | 95.5 | 0.0 | -0.39 | 0.73 | 0.67 | 0.79 | 1.33 | 5032 | 655 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7C7A | 30297 | 2022-05-15 | 2020-05-24 | 2.8 | 3.32 | — | 3.1 | 0.002 | 0.58 | 0.0 | 0.04 | 14.30 | 0.00 | 2.157 | 8.79 | 0.04 | 5.9 | 94.0 | 0.1 | -2.84 | 0.79 | 0.71 | 0.74 | 3.1 | 0.008 | 0.90 | 1.0 | 0.04 | 16.43 | 0.01 | 1.702 | 13.67 | 2.74 | 6.7 | 93.3 | 0.0 | -0.44 | 0.88 | 0.84 | 0.82 | 1.32 | 27500 | 2519 | 16 | 339 | 4 | 0 | 0 | logfile |
✔ | 7C76 | 30293 | 2022-05-13 | 2020-05-23 | 3.4 | 3.82 | — | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 16.02 | 0.00 | 2.219 | 9.61 | 1.91 | 5.8 | 94.1 | 0.1 | -2.76 | 0.62 | 0.76 | 1.72 | 3.7 | 0.006 | 0.83 | 0.0 | 0.05 | 17.24 | 0.01 | 2.084 | 18.10 | 0.57 | 6.3 | 93.6 | 0.1 | -0.89 | 1.38 | 0.60 | 0.80 | 2.25 | 9762 | 1174 | 11 | 0 | 25 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2022-05-17 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 13.94 | 0.00 | 2.139 | 8.38 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.4 | 0.007 | 1.28 | 0.0 | 0.17 | 17.71 | 0.01 | 2.066 | 17.56 | 2.77 | 6.8 | 93.2 | 0.0 | -1.95 | 1.85 | 0.76 | 0.69 | 0.77 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |
✔ | 7C77 | 30294 | 2022-05-13 | 2020-05-23 | 3.3 | 3.60 | — | 3.8 | 0.002 | 0.62 | 0.0 | 0.04 | 16.23 | 0.00 | 2.209 | 9.40 | 1.88 | 5.0 | 94.9 | 0.1 | -2.63 | 0.58 | 0.75 | 1.54 | 3.8 | 0.004 | 0.78 | 0.0 | 0.04 | 17.29 | 0.01 | 2.155 | 12.72 | 0.66 | 5.4 | 94.6 | 0.0 | -0.71 | 0.55 | 0.55 | 0.77 | 1.97 | 9762 | 1183 | 9 | 0 | 20 | 0 | 0 | logfile |
✔ | 7CYN | 30501 | 2022-05-14 | 2020-09-03 | 4.2 | 5.28 | — | 4.4 | 0.002 | 0.51 | 0.0 | 0.04 | 12.54 | 0.00 | 2.204 | 9.30 | 0.09 | 5.6 | 94.4 | 0.1 | -2.47 | 0.67 | 0.65 | — | 4.4 | 0.003 | 0.74 | 0.0 | 0.04 | 12.80 | 0.00 | 2.099 | 18.87 | 0.00 | 5.6 | 94.4 | 0.0 | -0.60 | 1.48 | 0.72 | 0.80 | — | 20432 | 2538 | 8 | 0 | 6 | 0 | 0 | logfile |