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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW4 | 9540 | 2022-12-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6D00 | 7782 | 2022-12-20 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 4.03 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZBo | 6746 | 2022-12-16 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.004 | 0.80 | 0.0 | 0.04 | 13.19 | 0.00 | 2.084 | 21.72 | 0.00 | 6.6 | 93.4 | 0.0 | -2.55 | 2.97 | 0.74 | 0.80 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2022-12-13 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.35 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 16.37 | 0.00 | 2.024 | 14.12 | 0.48 | 6.2 | 93.8 | 0.1 | -0.36 | 2.04 | 0.85 | 0.85 | 1.51 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7PY8 | 13716 | 2022-12-15 | 2021-10-09 | 3.8 | 2.61 | — | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 15.36 | 0.00 | 2.163 | 8.07 | 0.04 | 4.4 | 95.6 | 0.0 | -0.59 | 0.73 | 0.74 | 1.28 | 2.2 | 0.003 | 0.80 | 0.0 | 0.05 | 17.92 | 0.01 | 2.093 | 13.36 | 0.53 | 5.3 | 94.7 | 0.0 | -0.73 | 0.78 | 0.75 | 0.75 | 1.12 | 27442 | 3307 | 10 | 75 | 3 | 0 | 0 | logfile |
✔ | 7U32 | 26322 | 2022-12-16 | 2022-02-25 | 3.46 | 3.64 | 3.46 | 3.6 | 0.002 | 0.51 | 0.0 | 0.04 | 14.68 | 0.00 | 2.170 | 7.94 | 0.00 | 2.5 | 97.5 | 0.0 | 0.75 | 0.56 | 0.48 | 1.42 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 17.73 | 0.00 | 2.094 | 9.72 | 0.30 | 2.6 | 97.3 | 0.1 | 0.49 | 0.98 | 0.72 | 0.73 | 1.39 | 32150 | 3802 | 32 | 64 | 14 | 0 | 0 | logfile |
✔ | 7ZDQ | 14666 | 2022-12-11 | 2022-03-29 | 3.2 | 2.77 | 3.10 | 2.9 | 0.002 | 0.54 | 0.0 | 0.04 | 15.18 | 0.00 | 2.212 | 6.55 | 0.15 | 2.3 | 97.7 | 0.0 | 1.48 | 0.71 | 0.81 | 3.08 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 16.19 | 0.00 | 2.212 | 6.38 | 0.30 | 2.4 | 97.6 | 0.0 | 1.36 | 0.26 | 0.72 | 0.84 | 3.18 | 6264 | 763 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WHJ | 32501 | 2022-12-15 | 2021-12-30 | 3.27 | 2.36 | — | 2.1 | 0.002 | 0.44 | 0.0 | 0.04 | 8.76 | 0.01 | 2.217 | 6.93 | 1.96 | 4.4 | 95.5 | 0.1 | -3.44 | 0.74 | 0.73 | 2.56 | 2.1 | 0.003 | 0.67 | 0.0 | 0.05 | 14.00 | 0.00 | 2.088 | 10.68 | 0.50 | 6.7 | 93.3 | 0.0 | -1.50 | 0.62 | 0.77 | 0.78 | 2.47 | 27788 | 3499 | 9 | 0 | 40 | 0 | 0 | logfile |
✔ | 7TPP | 26060 | 2022-12-14 | 2022-01-25 | 4.1 | 4.39 | 4.20 | 7.9 | 0.002 | 0.53 | 0.0 | 0.04 | 9.16 | 0.00 | 2.240 | 10.18 | 2.87 | 21.8 | 75.4 | 2.8 | -5.30 | 0.70 | 0.35 | — | 7.8 | 0.004 | 0.90 | 0.0 | 0.05 | 12.27 | 0.01 | 2.016 | 33.40 | 0.00 | 16.5 | 83.4 | 0.2 | -3.98 | 1.53 | 0.78 | 0.63 | — | 18513 | 2309 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z1Z | 14453 | 2022-12-19 | 2022-02-25 | 3.5 | 2.62 | 3.61 | 1.8 | 0.002 | 0.51 | 0.0 | 0.04 | 15.15 | 0.00 | 2.224 | 7.63 | 0.00 | 2.4 | 97.6 | 0.0 | 0.26 | 0.64 | 0.65 | 1.09 | 1.7 | 0.004 | 0.78 | 0.0 | 0.05 | 18.31 | 0.00 | 2.067 | 15.01 | 0.23 | 3.9 | 96.1 | 0.0 | -0.07 | 0.75 | 0.67 | 0.67 | 1.49 | 35605 | 4031 | 36 | 140 | 12 | 0 | 0 | logfile |
✔ | 7X9C | 33071 | 2022-12-11 | 2022-03-15 | 3.0 | 3.24 | — | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 10.16 | 0.00 | 2.208 | 8.90 | 0.00 | 3.2 | 96.8 | 0.0 | -2.49 | 0.58 | 0.71 | 1.58 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 14.73 | 0.00 | 2.165 | 12.97 | 2.12 | 3.2 | 96.8 | 0.0 | -0.14 | 0.62 | 0.59 | 0.77 | 1.49 | 7219 | 945 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W0D | 32239 | 2022-12-14 | 2021-11-18 | 4.18 | 4.33 | — | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 13.75 | 0.00 | 2.067 | 15.83 | 0.05 | 5.0 | 95.0 | 0.0 | -0.30 | 0.91 | 0.80 | — | 3.7 | 0.002 | 0.60 | 0.0 | 0.04 | 14.08 | 0.00 | 1.993 | 15.00 | 0.00 | 5.0 | 95.0 | 0.0 | -0.27 | 0.39 | 0.91 | 0.80 | — | 20322 | 2233 | 8 | 104 | 4 | 0 | 0 | logfile |
✔ | 7T3U | 25671 | 2022-12-21 | 2021-12-08 | 3.7 | 4.00 | 3.79 | 3.8 | 0.002 | 0.45 | 0.0 | 0.04 | 11.67 | 0.00 | 1.968 | 6.34 | 0.00 | 4.2 | 95.8 | 0.0 | 1.94 | 0.59 | 0.60 | 1.23 | 3.8 | 0.030 | 1.69 | 0.0 | 0.08 | 15.10 | 0.01 | 1.870 | 33.15 | 2.85 | 12.7 | 86.8 | 0.6 | -2.30 | 2.22 | 0.65 | 0.71 | 1.31 | 44501 | 7269 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 7SGZ | 25121 | 2022-12-14 | 2021-10-07 | 3.17 | 3.52 | — | 3.5 | 0.002 | 0.53 | 0.0 | 0.04 | 15.13 | 0.00 | 2.128 | 7.19 | 0.04 | 5.5 | 94.5 | 0.0 | 0.10 | 0.68 | 0.74 | 1.35 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 17.10 | 0.00 | 1.943 | 12.18 | 0.39 | 5.9 | 94.0 | 0.0 | 0.04 | 0.55 | 0.68 | 0.80 | 1.95 | 21055 | 2558 | 15 | 23 | 10 | 0 | 0 | logfile |
✔ | 7N9Q | 24259 | 2022-12-11 | 2021-06-18 | 4.6 | 4.92 | — | 2.3 | 0.002 | 0.88 | 0.0 | 0.00 | 5.65 | 0.00 | 2.600 | 0.00 | 0.00 | 8.9 | 90.3 | 0.8 | -1.59 | 0.79 | 0.69 | — | 2.5 | 0.003 | 1.01 | 0.0 | 0.00 | 5.01 | 0.00 | 2.577 | 6.97 | 0.00 | 13.1 | 86.1 | 0.9 | -4.51 | 2.40 | 0.85 | 0.81 | — | 6945 | 2315 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TiB | 25616 | 2022-12-14 | 2022-01-13 | 3.4 | 3.28 | 3.41 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 16.66 | 0.00 | 2.099 | 8.58 | 1.09 | 2.2 | 97.8 | 0.0 | -1.97 | 0.64 | 0.79 | 1.73 | 3.2 | 0.005 | 0.67 | 0.0 | 0.04 | 18.53 | 0.00 | 1.846 | 11.67 | 0.44 | 3.4 | 96.6 | 0.0 | 0.30 | 1.19 | 0.64 | 0.83 | 1.97 | 21377 | 2581 | 15 | 42 | 9 | 0 | 0 | logfile |
✔ | 7X6o | 33024 | 2022-12-14 | 2022-03-07 | 3.5 | 2.65 | — | 3.8 | 0.002 | 0.48 | 0.0 | 0.04 | 8.09 | 0.00 | 2.283 | 3.29 | 1.82 | 2.0 | 98.0 | 0.0 | -3.07 | 0.60 | 0.53 | 0.73 | 2.1 | 0.004 | 0.80 | 0.0 | 0.05 | 12.66 | 0.00 | 2.094 | 17.72 | 0.33 | 5.0 | 95.0 | 0.0 | -0.89 | 1.58 | 0.64 | 0.59 | 1.16 | 21609 | 2787 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WU2 | 32817 | 2022-12-11 | 2022-02-05 | 2.8 | 2.56 | — | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 12.86 | 0.00 | 2.200 | 6.70 | 0.00 | 2.1 | 97.9 | 0.0 | 0.79 | 0.64 | 0.77 | 2.92 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 16.03 | 0.00 | 2.187 | 7.28 | 2.51 | 3.1 | 96.9 | 0.0 | 0.92 | 1.20 | 0.65 | 0.81 | 3.13 | 7829 | 1010 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAZ | 32390 | 2022-12-12 | 2021-12-15 | 3.4 | 3.85 | — | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 18.60 | 0.00 | 2.160 | 11.54 | 5.53 | 4.0 | 95.8 | 0.2 | 0.74 | 0.67 | 0.58 | 0.88 | 3.5 | 0.005 | 0.79 | 0.0 | 0.04 | 19.93 | 0.00 | 2.075 | 24.82 | 0.60 | 7.8 | 91.9 | 0.2 | -0.63 | 1.97 | 0.70 | 0.65 | 0.81 | 11034 | 952 | 4 | 157 | 0 | 0 | 0 | logfile |