Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ELB	31179	2022-07-06	2021-04-09	4.1	4.43	—	4.1	0.002	0.59	0.0	0.04	13.34	0.00	2.021	9.22	2.07	8.6	91.4	0.0	-3.36	0.80	0.69	—	4.1	0.003	0.74	0.0	0.04	13.09	0.00	2.119	14.67	0.00	10.4	89.6	0.0	-1.19	1.46	0.83	0.74	—	31012	3972	8	0	10	0	0	logfile
✘	7R88	24311	2022-07-03	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10787	1368	4	0	0	0	0	logfile
✔	7KAT	22783	2022-07-03	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7o85	12761	2022-07-06	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	3.5	0.004	0.61	0.0	0.04	15.42	0.01	2.106	10.96	0.32	5.0	95.0	0.0	-0.97	0.55	0.74	0.81	3.18	28525	3843	28	0	14	0	0	logfile
✔	7BL6	12219	2022-07-06	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.66	0.0	0.03	16.96	0.00	1.946	35.11	0.17	8.2	91.8	0.1	-1.70	3.13	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	6K9F	9948	2022-07-04	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	7A29	11617	2022-07-06	2020-08-16	2.94	3.50	2.97	3.3	0.002	0.54	0.0	0.05	13.45	0.00	2.145	8.06	0.03	3.7	96.3	0.0	0.40	0.79	0.78	1.96	3.3	0.003	0.63	0.0	0.05	15.67	0.00	2.123	9.19	2.01	4.4	95.6	0.0	-0.04	0.61	0.78	0.78	2.41	28286	3510	17	0	61	0	0	logfile
✘	7AAP	11692	2022-07-03	2020-09-04	2.5	2.71	2.48	2.8	0.002	0.47	0.0	0.04	12.42	0.00	1.236	3.74	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9446	1120	9	21	7	0	0	logfile
✔	7D58	30577	2022-07-07	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.38	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.007	1.28	0.0	0.17	17.71	0.01	2.066	17.56	2.77	6.8	93.2	0.0	-1.95	1.85	0.76	0.69	0.77	40568	4980	26	46	8	0	0	logfile
✔	6W6K	21558	2022-07-07	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.81	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	6W7M	21571	2022-07-08	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.009	1.11	2.0	0.05	18.82	0.01	1.977	32.75	0.89	14.0	85.7	0.4	-3.21	1.33	0.72	0.62	0.56	50694	2319	20	1512	0	0	0	logfile
✔	6Z3Y	11066	2022-07-03	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.43	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile
✔	6W7N	21572	2022-07-07	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.007	0.73	0.0	0.04	15.89	0.01	2.082	12.57	1.30	12.0	87.7	0.4	-2.51	1.25	0.79	0.79	1.50	42287	1660	15	1372	0	0	0	logfile
✔	7JGE	22324	2022-07-04	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.14	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.006	0.61	0.0	0.06	15.49	0.00	2.052	17.72	0.23	7.1	92.9	0.0	0.20	0.63	0.59	0.64	—	20315	1437	1	0	0	0	8508	logfile
✔	7KAL	22774	2022-07-03	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.92	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	4.2	0.003	0.68	0.0	0.04	14.44	0.00	2.240	9.07	0.28	3.1	96.8	0.1	1.85	0.59	0.63	0.83	—	10789	1429	7	0	0	0	0	logfile
✔	6WFQ	21652	2022-07-03	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.91	0.0	0.05	19.24	0.01	2.157	23.59	0.27	6.5	93.5	0.0	-0.40	1.01	0.85	0.81	0.54	4164	447	4	30	0	0	0	logfile
✘	7CRH	30452	2022-07-04	2020-08-13	3.3	3.36	—	3.6	0.002	0.57	0.0	0.04	13.74	0.00	1.279	10.54	1.40	3.2	96.8	0.0	-2.77	0.57	0.79	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8068	1035	5	0	1	0	0	logfile
✔	7CR3	30446	2022-07-04	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.003	0.86	0.0	0.04	16.84	0.00	2.167	16.43	0.24	3.4	96.6	0.0	0.79	2.00	0.60	0.73	1.15	15924	1968	8	0	0	0	0	logfile
✔	7BL3	12216	2022-07-06	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.48	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.005	0.67	0.0	0.04	15.54	0.01	1.967	17.85	0.85	9.0	91.0	0.0	-1.75	0.59	0.76	0.83	1.07	92831	3612	39	3021	2	27	0	logfile
✔	7KMZ	22932	2022-07-06	2020-11-03	3.62	4.29	3.73	3.7	0.002	0.44	0.0	0.04	13.94	0.00	2.006	3.87	0.00	3.4	96.6	0.0	-0.09	0.84	0.79	1.68	3.8	0.004	0.67	0.0	0.04	15.31	0.00	2.174	9.86	0.11	4.2	95.8	0.0	-0.66	0.45	0.86	0.83	1.32	34453	4260	14	0	61	0	0	logfile

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