Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D59	30578	2022-05-17	2020-09-25	3.1	3.84	—	3.5	0.002	0.61	0.0	0.54	14.30	0.00	2.196	7.62	0.00	4.5	95.4	0.1	-3.52	0.85	0.79	0.90	3.5	0.006	1.10	0.0	0.17	16.20	0.00	2.123	11.58	0.34	5.7	94.3	0.0	-0.96	0.85	0.87	0.85	1.62	39898	5010	23	0	8	0	0	logfile
✔	7NDC	12283	2022-05-16	2021-01-30	4.1	4.42	—	4.2	0.002	0.52	0.0	0.04	11.62	0.00	2.118	3.67	0.37	3.9	96.1	0.0	-0.43	0.83	0.75	—	4.2	0.003	0.59	0.0	0.04	12.14	0.00	2.100	9.52	0.03	3.6	96.4	0.0	0.30	1.80	0.85	0.79	—	30645	3852	27	0	54	0	0	logfile
✔	7JiC	22344	2022-05-12	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.84	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.008	1.09	0.0	0.04	14.28	0.00	2.219	11.50	0.17	4.0	96.0	0.0	0.43	2.00	0.68	0.81	2.60	5980	842	4	0	0	0	0	logfile
✔	7B0Y	11972	2022-05-17	2020-11-23	3.6	3.87	3.41	3.7	0.002	0.42	0.0	0.04	15.19	0.00	1.954	4.48	0.02	2.1	97.9	0.0	-2.96	0.75	0.78	2.05	3.7	0.006	0.76	1.0	0.04	17.28	0.00	2.099	12.40	0.14	3.2	96.8	0.0	-0.18	1.23	0.75	0.78	1.75	43792	4745	31	274	9	0	0	logfile
✔	6XAS	22114	2022-05-18	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	5.01	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.004	0.65	0.0	0.04	14.63	0.00	1.805	9.32	0.20	4.4	95.6	0.0	-0.24	0.76	0.61	0.54	1.64	46887	5804	16	73	3	0	0	logfile
✔	6W6K	21558	2022-05-18	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.81	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	6X87	22089	2022-05-17	2020-06-01	3.2	3.56	—	3.5	0.002	0.52	0.0	0.04	11.69	0.01	2.262	5.90	0.11	4.2	95.8	0.0	-1.72	0.60	0.62	2.46	3.5	0.008	0.87	1.0	0.04	14.89	0.01	2.096	11.35	0.38	2.7	97.3	0.0	-0.29	0.72	0.68	0.77	2.78	23173	3085	15	0	0	0	0	logfile
✔	6W77	21569	2022-05-18	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.36	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.005	0.73	0.0	0.04	16.22	0.01	1.738	15.78	0.43	9.8	90.0	0.2	-1.80	1.76	0.76	0.70	0.99	47940	1949	18	1519	0	0	0	logfile
✔	6W7W	21573	2022-05-15	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.72	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.80	0.0	0.04	17.06	0.01	2.075	26.17	1.29	7.7	92.3	0.0	-1.52	0.61	0.92	0.85	1.34	26883	1047	10	871	0	0	0	logfile
✔	6W7N	21572	2022-05-17	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.007	0.73	0.0	0.04	15.89	0.01	2.082	12.57	1.30	12.0	87.7	0.4	-2.51	1.25	0.79	0.79	1.50	42287	1660	15	1372	0	0	0	logfile
✔	6XMG	22258	2022-05-12	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.84	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.5	0.004	0.76	0.0	0.04	18.71	0.01	1.998	43.36	0.20	10.7	89.3	0.0	-2.06	0.75	0.90	0.78	—	8361	638	4	154	1	0	0	logfile
✔	7ND5	12276	2022-05-15	2021-01-30	3.4	3.66	—	3.5	0.002	0.52	0.0	0.04	11.27	0.00	2.167	4.27	0.32	3.6	96.3	0.0	-0.49	0.77	0.73	1.55	3.5	0.008	0.84	1.0	0.05	13.89	0.00	2.144	9.90	0.32	3.8	96.1	0.1	0.23	0.71	0.79	0.78	1.78	26710	3406	19	0	49	0	0	logfile
✔	6VWN	21422	2022-05-17	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.15	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.17	0.00	1.889	15.68	0.51	6.1	93.9	0.0	-1.23	1.21	0.84	0.86	1.05	140036	5341	57	4580	55	0	0	logfile
✔	7NDB	12282	2022-05-15	2021-01-30	4.6	5.10	—	4.9	0.002	0.52	0.0	0.04	11.41	0.00	2.174	5.19	0.72	4.5	95.3	0.1	-0.78	0.82	0.72	—	4.9	0.003	0.68	0.0	0.05	12.09	0.00	2.116	16.17	0.03	4.2	95.7	0.0	-0.42	0.95	0.84	0.77	—	27184	3460	19	0	50	0	0	logfile
✔	6ZQi	11364	2022-05-12	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	6.43	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.86	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	7C7A	30297	2022-05-15	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.79	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.008	0.90	1.0	0.04	16.43	0.01	1.702	13.67	2.74	6.7	93.3	0.0	-0.44	0.88	0.84	0.82	1.32	27500	2519	16	339	4	0	0	logfile
✔	7C76	30293	2022-05-13	2020-05-23	3.4	3.82	—	3.7	0.002	0.56	0.0	0.04	16.02	0.00	2.219	9.61	1.91	5.8	94.1	0.1	-2.76	0.62	0.76	1.72	3.7	0.006	0.83	0.0	0.05	17.24	0.01	2.084	18.10	0.57	6.3	93.6	0.1	-0.89	1.38	0.60	0.80	2.25	9762	1174	11	0	25	0	0	logfile
✔	7D58	30577	2022-05-17	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.38	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.007	1.28	0.0	0.17	17.71	0.01	2.066	17.56	2.77	6.8	93.2	0.0	-1.95	1.85	0.76	0.69	0.77	40568	4980	26	46	8	0	0	logfile
✔	7C77	30294	2022-05-13	2020-05-23	3.3	3.60	—	3.8	0.002	0.62	0.0	0.04	16.23	0.00	2.209	9.40	1.88	5.0	94.9	0.1	-2.63	0.58	0.75	1.54	3.8	0.004	0.78	0.0	0.04	17.29	0.01	2.155	12.72	0.66	5.4	94.6	0.0	-0.71	0.55	0.55	0.77	1.97	9762	1183	9	0	20	0	0	logfile
✔	7CYN	30501	2022-05-14	2020-09-03	4.2	5.28	—	4.4	0.002	0.51	0.0	0.04	12.54	0.00	2.204	9.30	0.09	5.6	94.4	0.1	-2.47	0.67	0.65	—	4.4	0.003	0.74	0.0	0.04	12.80	0.00	2.099	18.87	0.00	5.6	94.4	0.0	-0.60	1.48	0.72	0.80	—	20432	2538	8	0	6	0	0	logfile

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