Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GW4	9540	2022-12-19	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6D00	7782	2022-12-20	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38328	4824	12	0	12	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✔	5ZBo	6746	2022-12-16	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.004	0.80	0.0	0.04	13.19	0.00	2.084	21.72	0.00	6.6	93.4	0.0	-2.55	2.97	0.74	0.80	—	89100	10860	60	0	0	0	0	logfile
✔	6NEQ	9358	2022-12-13	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.70	0.0	0.04	16.37	0.00	2.024	14.12	0.48	6.2	93.8	0.1	-0.36	2.04	0.85	0.85	1.51	65776	5509	32	952	147	0	0	logfile
✔	7PY8	13716	2022-12-15	2021-10-09	3.8	2.61	—	3.2	0.002	0.52	0.0	0.04	15.36	0.00	2.163	8.07	0.04	4.4	95.6	0.0	-0.59	0.73	0.74	1.28	2.2	0.003	0.80	0.0	0.05	17.92	0.01	2.093	13.36	0.53	5.3	94.7	0.0	-0.73	0.78	0.75	0.75	1.12	27442	3307	10	75	3	0	0	logfile
✔	7U32	26322	2022-12-16	2022-02-25	3.46	3.64	3.46	3.6	0.002	0.51	0.0	0.04	14.68	0.00	2.170	7.94	0.00	2.5	97.5	0.0	0.75	0.56	0.48	1.42	3.5	0.003	0.57	0.0	0.04	17.73	0.00	2.094	9.72	0.30	2.6	97.3	0.1	0.49	0.98	0.72	0.73	1.39	32150	3802	32	64	14	0	0	logfile
✔	7ZDQ	14666	2022-12-11	2022-03-29	3.2	2.77	3.10	2.9	0.002	0.54	0.0	0.04	15.18	0.00	2.212	6.55	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.0	0.003	0.50	0.0	0.04	16.19	0.00	2.212	6.38	0.30	2.4	97.6	0.0	1.36	0.26	0.72	0.84	3.18	6264	763	3	0	3	0	0	logfile
✔	7WHJ	32501	2022-12-15	2021-12-30	3.27	2.36	—	2.1	0.002	0.44	0.0	0.04	8.76	0.01	2.217	6.93	1.96	4.4	95.5	0.1	-3.44	0.74	0.73	2.56	2.1	0.003	0.67	0.0	0.05	14.00	0.00	2.088	10.68	0.50	6.7	93.3	0.0	-1.50	0.62	0.77	0.78	2.47	27788	3499	9	0	40	0	0	logfile
✔	7TPP	26060	2022-12-14	2022-01-25	4.1	4.39	4.20	7.9	0.002	0.53	0.0	0.04	9.16	0.00	2.240	10.18	2.87	21.8	75.4	2.8	-5.30	0.70	0.35	—	7.8	0.004	0.90	0.0	0.05	12.27	0.01	2.016	33.40	0.00	16.5	83.4	0.2	-3.98	1.53	0.78	0.63	—	18513	2309	5	0	0	0	0	logfile
✔	7Z1Z	14453	2022-12-19	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.004	0.78	0.0	0.05	18.31	0.00	2.067	15.01	0.23	3.9	96.1	0.0	-0.07	0.75	0.67	0.67	1.49	35605	4031	36	140	12	0	0	logfile
✔	7X9C	33071	2022-12-11	2022-03-15	3.0	3.24	—	3.2	0.002	0.51	0.0	0.04	10.16	0.00	2.208	8.90	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.003	0.68	0.0	0.04	14.73	0.00	2.165	12.97	2.12	3.2	96.8	0.0	-0.14	0.62	0.59	0.77	1.49	7219	945	5	0	0	0	0	logfile
✔	7W0D	32239	2022-12-14	2021-11-18	4.18	4.33	—	3.7	0.002	0.58	0.0	0.04	13.75	0.00	2.067	15.83	0.05	5.0	95.0	0.0	-0.30	0.91	0.80	—	3.7	0.002	0.60	0.0	0.04	14.08	0.00	1.993	15.00	0.00	5.0	95.0	0.0	-0.27	0.39	0.91	0.80	—	20322	2233	8	104	4	0	0	logfile
✔	7T3U	25671	2022-12-21	2021-12-08	3.7	4.00	3.79	3.8	0.002	0.45	0.0	0.04	11.67	0.00	1.968	6.34	0.00	4.2	95.8	0.0	1.94	0.59	0.60	1.23	3.8	0.030	1.69	0.0	0.08	15.10	0.01	1.870	33.15	2.85	12.7	86.8	0.6	-2.30	2.22	0.65	0.71	1.31	44501	7269	8	0	14	0	0	logfile
✔	7SGZ	25121	2022-12-14	2021-10-07	3.17	3.52	—	3.5	0.002	0.53	0.0	0.04	15.13	0.00	2.128	7.19	0.04	5.5	94.5	0.0	0.10	0.68	0.74	1.35	3.5	0.003	0.56	0.0	0.04	17.10	0.00	1.943	12.18	0.39	5.9	94.0	0.0	0.04	0.55	0.68	0.80	1.95	21055	2558	15	23	10	0	0	logfile
✔	7N9Q	24259	2022-12-11	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.01	0.0	0.00	5.01	0.00	2.577	6.97	0.00	13.1	86.1	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7TiB	25616	2022-12-14	2022-01-13	3.4	3.28	3.41	3.3	0.002	0.53	0.0	0.04	16.66	0.00	2.099	8.58	1.09	2.2	97.8	0.0	-1.97	0.64	0.79	1.73	3.2	0.005	0.67	0.0	0.04	18.53	0.00	1.846	11.67	0.44	3.4	96.6	0.0	0.30	1.19	0.64	0.83	1.97	21377	2581	15	42	9	0	0	logfile
✔	7X6o	33024	2022-12-14	2022-03-07	3.5	2.65	—	3.8	0.002	0.48	0.0	0.04	8.09	0.00	2.283	3.29	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.004	0.80	0.0	0.05	12.66	0.00	2.094	17.72	0.33	5.0	95.0	0.0	-0.89	1.58	0.64	0.59	1.16	21609	2787	12	0	0	0	0	logfile
✔	7WU2	32817	2022-12-11	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.70	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.003	0.56	0.0	0.04	16.03	0.00	2.187	7.28	2.51	3.1	96.9	0.0	0.92	1.20	0.65	0.81	3.13	7829	1010	5	0	0	0	0	logfile
✔	7WAZ	32390	2022-12-12	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	18.60	0.00	2.160	11.54	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.5	0.005	0.79	0.0	0.04	19.93	0.00	2.075	24.82	0.60	7.8	91.9	0.2	-0.63	1.97	0.70	0.65	0.81	11034	952	4	157	0	0	0	logfile

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