Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5WK6	8856	2021-12-01	2017-07-24	4.3	4.51	—	4.5	0.013	1.25	0.0	0.05	10.13	0.01	2.029	21.17	0.00	7.2	92.8	0.0	-3.04	0.36	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	161663	11029	41	0	0	0	80524	logfile
✔	5ND4	3622	2021-12-01	2017-03-07	4.4	5.55	—	5.5	0.009	1.49	11.0	0.20	21.69	0.01	1.678	26.62	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.4	0.004	0.91	0.0	0.05	15.31	0.01	1.348	29.15	0.10	7.9	91.6	0.5	-2.12	1.92	0.48	0.72	—	9435	1175	6	1	6	0	0	logfile
✔	5MS1	3562	2021-12-01	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.004	0.73	0.0	0.05	12.70	0.00	2.117	12.11	0.00	4.4	95.6	0.0	-0.65	1.54	0.47	0.85	—	4350	556	2	0	0	0	0	logfile
✔	6QJP	4565	2021-12-01	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6HRF	0260	2021-12-01	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	8.66	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	6LYY	30019	2021-12-01	2020-02-16	3.2	3.40	—	3.9	0.013	1.39	9.0	0.10	13.52	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.004	0.76	0.0	0.04	15.92	0.01	2.235	9.81	1.20	4.7	95.3	0.0	0.24	1.24	0.46	0.66	1.88	4104	597	3	0	1	0	0	logfile
✔	6CU7	7618	2021-12-01	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	16.55	0.71	13.1	86.9	0.0	-4.59	1.76	0.39	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	6QJM	4564	2021-12-01	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	7FG2	31574	2021-12-01	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.59	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.77	0.0	0.05	14.71	0.00	2.116	18.54	0.00	13.7	86.0	0.3	-2.76	0.71	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	6N9Y	0383	2021-12-01	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	13.95	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	6PES	20331	2021-12-01	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.003	0.59	0.0	0.05	14.73	0.00	2.341	7.11	0.00	6.5	93.5	0.0	-2.43	0.56	0.41	0.81	2.65	4040	590	10	0	0	0	0	logfile
✔	7FFN	31569	2021-12-01	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.006	0.73	0.0	0.05	14.67	0.01	2.176	7.54	2.76	5.8	94.2	0.0	-0.63	2.02	0.42	0.87	3.42	8589	1112	6	0	1	0	0	logfile
✔	7DA4	30622	2021-12-01	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.39	0.61	—	507	66	3	0	0	0	0	logfile
✔	6QPi	4614	2021-12-01	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	5X0M	6698	2021-12-02	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✔	7NCK	12269	2021-12-01	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.002	0.57	0.0	0.06	15.96	0.00	2.157	6.82	0.74	3.0	97.0	0.0	-2.17	0.96	0.36	0.73	2.23	5430	384	6	0	0	0	2778	logfile
✔	7E0F	30931	2021-12-01	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.39	0.80	3.91	2022	294	6	0	0	0	0	logfile
✔	6QJQ	4566	2021-12-01	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.76	1.88	1218	162	6	0	0	0	0	logfile
✔	7DRT	30827	2021-12-01	2020-12-29	2.2	2.32	—	2.3	0.011	1.53	9.0	0.09	13.34	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.74	0.0	0.04	17.33	0.01	2.233	9.77	4.90	5.1	94.8	0.1	-0.18	1.11	0.64	0.76	2.48	6849	830	7	0	7	10	0	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile

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