Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KU5	23034	2022-12-11	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	6EU3	3958	2022-12-20	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.003	0.84	0.0	0.05	15.81	0.00	1.912	14.56	0.40	11.7	88.0	0.3	-2.66	1.63	0.62	0.61	0.65	38330	4825	22	0	7	0	0	logfile
✔	7LiV	23386	2022-12-22	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	27.01	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.005	0.85	0.0	0.05	17.32	0.01	2.038	15.21	1.12	6.1	93.9	0.1	-1.34	1.79	0.39	0.82	1.44	47058	5903	12	0	0	0	0	logfile
✔	5Li4	4052	2022-12-14	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.0	0.004	1.00	0.0	0.05	13.63	0.01	2.096	28.96	0.00	14.1	84.7	1.2	-3.67	4.17	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✘	6RBE	4794	2022-12-19	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6VHL	21207	2022-12-11	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	16.17	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.003	0.73	0.0	0.04	16.47	0.00	2.338	9.12	0.75	10.7	89.3	0.0	-3.61	2.63	0.27	0.69	3.44	1190	158	4	0	0	0	0	logfile
✔	7U15	26278	2022-12-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.70	2.64	6684	405	6	0	12	0	3255	logfile
✔	6X0U	21984	2022-12-11	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.03	17.56	0.00	2.197	6.86	0.29	2.9	97.1	0.0	1.58	0.81	0.27	0.78	2.25	3091	398	4	0	0	0	0	logfile
✔	7QL4	14063	2022-12-11	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.59	0.0	0.05	15.13	0.00	2.055	8.49	0.00	1.8	98.2	0.0	-1.69	3.11	0.31	0.74	3.85	7074	456	6	0	0	0	3606	logfile
✔	8A1S	15086	2022-12-13	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.32	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.003	0.75	0.0	0.05	12.92	0.01	1.967	15.85	0.24	4.3	95.5	0.2	-1.09	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✔	6SXo	10344	2022-12-13	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	6.10	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.64	0.00	2.121	10.83	0.70	3.3	96.7	0.0	-1.07	0.68	0.26	0.77	2.06	14894	973	8	326	0	0	0	logfile
✔	6iAC	4435	2022-12-11	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.92	0.0	0.05	16.36	0.01	2.075	12.76	0.37	8.6	91.4	0.0	-0.81	1.04	0.26	0.76	1.41	8210	1057	11	0	0	0	0	logfile
✔	6i5A	4413	2022-12-11	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	6M99	9050	2022-12-19	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	7.02	0.38	5.8	94.2	0.0	-4.38	0.27	0.85	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101389	13152	14	0	2	0	0	logfile
✔	3KTT	5148	2022-12-11	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	8AZS	15770	2022-12-12	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.3	0.027	3.71	25.0	0.19	25.02	0.02	1.804	345.70	17.56	51.6	42.5	5.9	-8.21	18.78	0.21	0.21	0.44	9036	1224	36	0	0	0	0	logfile
✔	6EU2	3957	2022-12-20	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.07	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.006	1.12	0.0	0.06	15.75	0.01	1.981	21.10	1.13	13.5	86.0	0.5	-3.25	1.81	0.67	0.67	0.69	38329	4825	22	0	7	0	0	logfile
✔	6L4S	0833	2022-12-11	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.74	2.16	2268	330	6	0	0	0	0	logfile
✔	5MPE	3535	2022-12-21	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.98	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.003	0.80	0.0	0.04	14.92	0.00	1.932	18.88	0.00	5.5	94.2	0.3	-0.54	2.08	0.36	0.67	—	40974	5142	13	0	0	0	0	logfile
✔	7WCo	32426	2022-12-12	2021-12-20	3.8	3.90	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.28	0.53	14.2	85.8	0.0	-5.43	0.28	0.77	2.77	3.9	0.003	0.73	0.0	0.04	15.01	0.01	2.177	8.75	1.50	8.1	91.9	0.0	-2.37	1.57	0.30	0.82	2.80	10740	1434	18	0	0	0	0	logfile

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