Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5WVE	6690	2023-11-19	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78605	9766	39	0	21	0	0	logfile
✔	8GWG	34312	2023-11-18	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.4	0.003	0.80	0.0	0.04	17.21	0.00	2.091	18.31	0.61	7.5	92.2	0.3	-1.79	1.70	0.76	0.60	0.23	21955	2668	13	52	9	1	0	logfile
✔	6CRZ	7577	2023-11-19	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	1oED	1044	2023-11-13	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	15.88	0.01	2.224	22.69	0.69	2.3	97.7	0.0	1.70	2.92	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	7NK1	12428	2023-11-20	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.70	0.0	0.04	14.15	0.01	1.865	23.13	0.00	6.8	93.2	0.0	-1.38	1.62	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	7YKR	33895	2023-11-21	2022-07-23	3.2	3.70	3.34	4.7	0.008	1.02	8.0	0.06	10.92	0.01	2.215	4.01	0.83	9.3	90.7	0.0	-6.34	0.34	0.19	0.00	3.6	0.003	0.76	0.0	0.04	15.56	0.00	2.187	9.20	0.33	7.4	92.6	0.0	-0.67	2.70	0.63	0.77	1.90	31924	4140	4	0	0	0	0	logfile
✘	6MN7	9166	2023-11-18	2018-10-01	4.8	5.01	—	5.0	0.016	2.23	12.0	0.12	10.62	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✘	8FXH	29533	2023-11-20	2023-01-24	2.8	2.94	2.88	4.0	0.006	1.37	50.0	0.10	17.25	0.01	2.235	6.73	1.19	7.8	91.8	0.4	-1.03	0.32	0.19	0.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30228	3786	6	0	0	0	0	logfile
✔	8DHX	27437	2023-11-16	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.61	0.0	0.03	18.22	0.00	2.322	6.08	2.19	2.1	97.9	0.0	5.65	0.44	0.73	0.81	3.01	34200	4152	24	0	0	0	0	logfile
✘	7ZNL	14808	2023-11-20	2022-04-21	3.45	3.67	3.55	3.4	0.005	0.78	0.0	0.04	11.78	0.01	2.171	7.60	6.04	6.6	93.1	0.3	-2.22	0.37	0.21	0.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84821	11173	28	0	0	0	0	logfile
✔	7APK	11857	2023-11-18	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.80	0.0	0.04	13.05	0.00	2.079	13.91	0.12	6.6	93.3	0.1	0.97	1.14	0.50	0.44	0.92	72697	9893	30	0	74	0	0	logfile
✔	6Q2o	20576	2023-11-16	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.40	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.95	0.0	0.05	15.06	0.01	2.101	21.20	0.78	9.2	90.8	0.1	-2.53	1.99	0.69	0.66	0.60	15196	1900	8	0	20	0	0	logfile
✔	7oTi	13060	2023-11-14	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✔	7LJ3	23388	2023-11-19	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.59	0.0	0.03	19.31	0.00	2.040	7.81	4.60	4.6	95.3	0.1	2.57	1.43	0.22	0.78	1.66	25714	2564	12	225	0	0	0	logfile
✔	8FZR	29638	2023-11-13	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	15.49	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.3	0.004	0.78	0.0	0.04	19.19	0.00	2.080	35.03	0.00	8.0	91.8	0.2	-2.33	2.29	0.83	0.67	0.78	5711	503	3	77	1	0	0	logfile
✔	7JSH	22454	2023-11-14	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7BZX	30262	2023-11-13	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	8GTB	34248	2023-11-16	2022-09-08	3.43	3.83	2.04	5.0	0.007	0.71	0.0	0.04	12.85	0.00	2.213	7.43	0.00	3.1	96.9	0.0	-3.27	0.48	0.25	0.01	3.9	0.004	0.74	0.0	0.04	15.89	0.00	2.107	9.16	0.50	3.4	96.6	0.0	-0.97	3.18	0.74	0.86	1.81	17136	2340	18	0	0	0	0	logfile
✔	7DZW	30915	2023-11-15	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7oLE	12979	2023-11-19	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile

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