Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H05	0108	2022-05-17	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.007	1.02	0.0	0.05	15.81	0.01	1.535	23.05	2.30	5.2	94.8	0.0	-1.96	1.64	0.58	0.48	0.74	44544	5664	24	0	0	0	0	logfile
✔	5M5H	4155	2022-05-12	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6CAJ	7442	2022-05-15	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.96	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.011	1.12	2.0	0.04	15.91	0.00	1.756	14.31	2.92	4.3	95.7	0.0	-0.61	0.75	0.75	0.82	2.85	24295	3210	11	0	1	0	0	logfile
✔	5WVE	6690	2022-05-15	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	69.21	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.53	0.00	1.821	24.92	0.01	7.8	91.5	0.7	-2.05	1.65	0.80	0.60	—	78605	9766	39	0	21	0	0	logfile
✔	5NV3	3699	2022-05-17	2017-05-03	3.39	3.43	—	3.4	0.007	1.21	2.0	0.07	14.58	0.00	2.164	3.27	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.020	1.19	0.0	0.04	16.57	0.00	1.942	8.72	0.15	3.4	96.6	0.0	-0.40	1.63	0.59	0.75	3.92	37816	4768	24	0	16	0	0	logfile
✔	6CRZ	7577	2022-05-15	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.85	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.007	0.94	0.0	0.05	13.56	0.01	2.084	15.47	0.61	7.1	92.9	0.1	-2.19	1.45	0.59	0.55	0.91	25909	3205	6	0	66	0	0	logfile
✔	5LKH	4068	2022-05-17	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.64	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	1oED	1044	2022-05-12	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	225.04	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	6PB5	20287	2022-05-14	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.22	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.006	0.88	0.0	0.04	16.87	0.01	1.751	32.80	0.00	13.9	85.9	0.2	-3.16	2.25	0.78	0.63	—	69696	4084	13	156	5	0	34319	logfile
✘	6MN7	9166	2022-05-14	2018-10-01	4.8	5.01	—	5.0	0.016	2.16	12.0	0.12	10.63	0.02	1.395	35.89	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	15	0	192	0	0	logfile
✔	7NK1	12428	2022-05-16	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.011	1.01	1.0	0.04	14.16	0.01	1.847	23.47	0.00	6.4	93.6	0.0	-1.30	1.60	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	7APK	11857	2022-05-15	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.14	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.84	1.0	0.04	12.90	0.00	1.695	14.03	0.09	5.7	94.1	0.1	1.02	1.04	0.49	0.42	0.88	72697	9893	30	0	74	0	0	logfile
✘	6iH9	9671	2022-05-03	2018-09-29	2.8	2.91	—	3.5	0.008	0.93	0.0	0.05	10.02	0.01	1.244	43.79	0.65	4.2	95.6	0.2	-2.32	0.34	0.23	0.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	248580	31020	60	0	0	0	0	logfile
✔	6Q2o	20576	2022-05-13	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.011	1.13	2.0	0.05	14.90	0.01	2.030	15.53	0.78	7.4	92.6	0.0	-1.91	1.86	0.66	0.62	0.66	15196	1900	8	0	20	0	0	logfile
✔	7ASN	11901	2022-05-15	2020-10-27	2.73	4.10	—	3.0	0.008	1.05	0.0	0.05	18.86	0.01	1.953	13.57	0.48	11.3	88.6	0.1	-3.27	0.46	0.23	-0.03	2.4	0.004	0.71	0.0	0.04	18.43	0.01	2.007	20.68	3.83	9.0	90.9	0.0	-2.12	2.00	0.87	0.80	0.84	80694	2545	25	2848	0	0	0	logfile
✔	7oTi	13060	2022-05-13	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.86	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.83	0.0	0.04	14.24	0.00	2.089	18.26	0.00	6.9	92.5	0.6	-1.00	1.74	0.51	0.50	—	9171	1182	1	0	0	0	0	logfile
✔	7LJ3	23388	2022-05-15	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.010	0.89	0.0	0.03	19.65	0.01	1.899	9.15	4.21	5.0	94.9	0.2	2.05	1.40	0.22	0.78	1.86	25714	2564	12	225	0	0	0	logfile
✔	7D58	30577	2022-05-17	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.38	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.007	1.28	0.0	0.17	17.71	0.01	2.066	17.56	2.77	6.8	93.2	0.0	-1.95	1.85	0.76	0.69	0.77	40568	4980	26	46	8	0	0	logfile
✔	7BZX	30262	2022-05-12	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	7DZW	30915	2022-05-13	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.92	0.0	0.00	6.11	0.00	2.144	5.08	0.00	15.8	84.1	0.1	-2.69	2.06	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile

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