Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o9G	3765	2021-08-09	2017-06-19	4.8	5.07	4.71	10.4	0.002	0.47	0.0	0.03	22.47	0.00	2.194	7.36	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.004	0.76	0.0	0.04	24.89	0.01	1.318	21.25	0.07	6.3	93.7	0.1	-1.04	2.74	0.88	0.81	—	19681	1610	11	324	2	0	0	logfile
✔	6H05	0108	2021-08-11	2018-07-06	2.9	3.15	—	3.5	0.016	1.10	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.2	0.008	1.06	0.0	0.05	15.53	0.01	1.620	23.84	1.82	5.3	94.7	0.0	-1.71	2.15	0.62	0.54	1.19	44544	5664	24	0	0	0	0	logfile
✔	6C9Y	7438	2021-08-10	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.64	5.32	7.8	90.7	1.5	-4.02	0.50	0.13	—	4.1	0.003	0.83	0.0	0.04	13.51	0.01	2.066	18.14	0.03	6.0	94.0	0.0	-1.52	2.88	0.66	0.51	—	28920	3685	7	0	3	0	0	logfile
✔	5M5H	4155	2021-08-07	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.93	0.0	0.05	12.47	0.01	2.287	16.05	0.00	7.9	92.1	0.0	-1.02	2.84	0.15	0.15	—	1086	132	1	0	0	0	0	logfile
✔	6CAJ	7442	2021-08-09	2018-01-31	2.8	2.84	—	4.2	0.007	0.89	0.0	0.05	9.87	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.64	0.33	0.15	2.28	2.9	0.011	1.04	2.0	0.05	16.49	0.00	2.158	13.00	2.84	5.0	95.0	0.0	-0.44	0.84	0.75	0.84	2.86	24295	3210	11	0	1	0	0	logfile
✔	5WVE	6690	2021-08-11	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	67.70	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.6	0.004	0.86	0.0	0.04	13.40	0.00	1.793	28.52	0.00	8.7	90.6	0.7	-2.27	3.58	0.83	0.70	—	78605	9766	39	0	21	0	0	logfile
✔	5NV3	3699	2021-08-11	2017-05-03	3.39	3.43	—	3.4	0.007	1.21	2.0	0.07	14.58	0.00	2.164	3.27	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.009	0.95	1.0	0.04	16.55	0.00	2.052	8.69	0.20	3.3	96.7	0.0	-0.54	1.64	0.68	0.78	4.23	37816	4768	24	0	16	0	0	logfile
✔	6CRZ	7577	2021-08-09	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.75	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.005	0.83	0.0	0.05	13.80	0.01	2.120	14.19	0.40	6.7	93.3	0.0	-1.81	1.83	0.69	0.71	1.02	25909	3205	6	0	66	0	0	logfile
✔	5LKH	4068	2021-08-11	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.003	0.80	0.0	0.04	15.64	0.01	2.102	24.44	0.59	6.3	93.6	0.0	-0.79	2.45	0.40	0.25	0.13	37345	4740	5	0	0	0	0	logfile
✔	1oED	1044	2021-08-07	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	221.91	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.39	0.01	2.271	19.76	0.35	1.5	98.5	0.0	2.27	4.39	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	6PB5	20287	2021-08-10	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.12	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.007	0.89	0.0	0.04	16.96	0.01	1.785	31.16	0.00	12.9	86.9	0.1	-3.25	3.08	0.77	0.61	—	69696	4084	13	156	5	0	34319	logfile
✔	6CFZ	7469	2021-08-13	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.010	1.01	13.0	0.05	12.04	0.01	1.548	36.39	0.00	12.0	87.6	0.4	2.64	1.90	0.33	0.42	—	204102	12937	170	0	0	0	102272	logfile
✔	6MN7	9166	2021-08-09	2018-10-01	4.8	5.01	—	5.0	0.016	2.16	12.0	0.12	10.63	0.02	1.395	35.15	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	4.8	0.004	0.83	0.0	0.07	11.53	0.01	2.144	13.70	0.00	7.6	92.2	0.3	-1.37	2.46	0.54	0.24	—	21447	2418	15	0	192	0	0	logfile
✔	7APK	11857	2021-08-10	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.99	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.008	0.88	1.0	0.04	13.40	0.00	1.906	12.98	0.06	5.4	94.5	0.1	0.88	1.66	0.50	0.44	0.89	72697	9893	30	0	74	0	0	logfile
✘	7ENC	31207	2021-08-09	2021-04-16	4.13	4.14	—	3.6	0.012	1.43	110.0	0.10	15.86	0.01	1.454	16.71	9.09	3.9	95.2	0.9	1.55	0.57	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	171177	21321	88	138	18	0	0	logfile
✔	6iH9	9671	2021-08-27	2018-09-29	2.8	2.91	—	3.5	0.008	0.94	0.0	0.05	10.02	0.01	1.244	43.37	0.65	4.2	95.6	0.2	-2.32	0.34	0.23	0.07	2.9	0.006	0.69	0.0	0.04	16.62	0.01	2.137	10.65	2.23	3.6	96.2	0.2	-0.88	1.85	0.84	0.89	4.60	248580	31020	60	0	0	0	0	logfile
✔	6Q2o	20576	2021-08-08	2019-08-08	3.65	3.77	—	3.9	0.004	0.78	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.94	0.0	0.05	15.12	0.01	1.996	18.95	0.60	7.9	92.1	0.0	-2.28	2.25	0.69	0.67	1.00	15196	1900	8	0	20	0	0	logfile
✔	7D58	30577	2021-08-11	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.18	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.3	0.007	1.30	0.0	0.17	18.04	0.01	2.038	16.93	3.12	7.1	92.8	0.0	-1.61	2.66	0.83	0.85	1.66	40568	4980	26	46	8	0	0	logfile
✔	7JSH	22454	2021-08-07	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.89	0.01	1.900	42.53	0.00	35.4	64.4	0.2	-5.88	8.07	0.79	0.73	—	7916	1904	8	15	0	0	0	logfile
✔	7DZW	30915	2021-08-08	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	1.99	0.00	5.1	93.3	1.6	-1.27	0.44	0.26	—	3.3	0.003	0.78	0.0	0.00	4.55	0.00	2.226	2.34	0.00	11.4	88.5	0.1	-1.82	2.18	0.76	0.74	—	13452	3363	3	0	0	0	0	logfile

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