Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CRZ	7577	2022-12-15	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.85	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.004	0.74	0.0	0.05	13.55	0.01	2.094	13.15	0.36	6.7	93.3	0.0	-1.76	1.51	0.62	0.60	0.91	25909	3205	25	0	66	0	0	logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile
✔	1oED	1044	2022-12-11	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	225.04	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	6MN7	9166	2022-12-18	2018-10-01	4.8	5.01	—	5.0	0.016	2.16	12.0	0.12	10.63	0.02	1.395	35.89	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✔	6PB5	20287	2022-12-14	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.22	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.004	0.78	0.0	0.04	16.73	0.01	1.760	29.07	0.00	12.7	87.1	0.2	-3.02	2.24	0.78	0.63	—	69696	4084	13	156	5	0	34319	logfile
✔	7NK1	12428	2022-12-16	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.003	0.68	0.0	0.04	14.21	0.01	1.876	21.64	0.00	5.9	94.1	0.0	-1.46	1.21	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	7R4Q	14314	2022-12-22	2022-02-09	3.6	3.14	—	5.7	0.022	3.25	109.0	0.39	15.94	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.011	1.10	8.0	0.17	15.72	0.01	1.713	26.22	0.78	9.0	91.0	0.0	-2.25	1.72	0.63	0.57	0.48	51420	3414	13	0	43	0	24182	logfile
✔	7APK	11857	2022-12-14	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.14	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.005	0.75	0.0	0.04	12.98	0.00	2.104	13.12	0.18	6.2	93.7	0.1	1.08	1.15	0.50	0.44	1.00	72697	9893	30	0	74	0	0	logfile
✔	7ASN	11901	2022-12-15	2020-10-27	2.73	4.10	—	3.0	0.008	1.05	0.0	0.05	18.86	0.01	1.953	13.57	0.48	11.3	88.6	0.1	-3.27	0.46	0.23	-0.03	2.4	0.005	0.78	0.0	0.04	18.80	0.01	2.007	25.75	4.70	9.7	90.3	0.0	-2.30	2.50	0.87	0.80	1.21	80694	2545	25	2848	0	0	0	logfile
✔	6Q2o	20576	2022-12-13	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.005	0.89	0.0	0.05	14.72	0.01	2.099	18.48	1.20	7.7	92.3	0.0	-1.96	2.05	0.68	0.65	0.76	15196	1900	8	0	20	0	0	logfile
✔	7LJ3	23388	2022-12-15	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.58	0.0	0.03	19.29	0.00	2.018	7.49	4.30	4.7	95.2	0.2	2.56	1.43	0.22	0.78	1.62	25714	2564	12	225	0	0	0	logfile
✔	7oTi	13060	2022-12-12	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.86	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.83	0.0	0.04	14.25	0.00	2.119	19.77	0.00	7.3	92.0	0.7	-1.08	2.02	0.51	0.50	—	9171	1182	1	0	0	0	0	logfile
✔	7D58	30577	2022-12-20	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.59	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.3	0.006	1.28	0.0	0.17	17.94	0.01	2.058	17.76	2.68	6.6	93.4	0.0	-1.88	2.22	0.79	0.78	1.00	40568	4980	26	46	8	0	0	logfile
✔	7JSH	22454	2022-12-11	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	7DZW	30915	2022-12-13	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.92	0.0	0.00	6.11	0.00	2.144	5.08	0.00	15.8	84.1	0.1	-2.69	2.06	0.77	0.75	—	13452	3363	3	0	0	0	0	logfile
✔	7BZX	30262	2022-12-11	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	7oLE	12979	2022-12-15	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.24	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.004	0.83	0.0	0.04	15.97	0.00	2.070	23.35	0.29	10.6	89.2	0.2	-1.84	1.92	0.78	0.77	0.80	26995	2899	14	0	1129	0	0	logfile
✘	6CB8	7449	2022-12-19	2018-02-02	3.8	4.12	—	4.3	0.006	0.84	0.0	0.05	11.53	0.01	0.173	75.29	0.00	18.6	81.4	0.0	-5.72	0.54	0.26	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103936	6440	28	0	28	0	52304	logfile
✔	7DZY	30921	2022-12-14	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.85	0.0	0.00	5.31	0.00	2.074	2.81	0.00	11.3	88.5	0.2	-2.84	2.17	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	5N6W	3595	2022-12-20	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.004	0.76	0.0	0.04	11.39	0.01	1.907	20.78	0.00	14.9	84.4	0.8	-3.93	1.98	0.72	0.72	—	40752	2512	16	0	0	0	20032	logfile

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