Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VX4	21429	2021-12-01	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.008	0.93	0.0	0.05	16.40	0.01	2.123	25.72	0.47	7.7	92.3	0.0	-1.75	1.49	0.84	0.83	2.48	9813	1265	9	0	0	0	0	logfile
✔	7KAL	22774	2021-12-02	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.74	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10789	1429	7	0	0	0	0	logfile
✔	7C76	30293	2021-12-01	2020-05-23	3.4	3.82	—	3.7	0.002	0.56	0.0	0.04	16.02	0.00	2.219	9.46	1.91	5.8	94.1	0.1	-2.76	0.62	0.76	1.72	3.7	0.006	0.83	0.0	0.05	17.24	0.01	2.084	18.00	0.57	6.3	93.6	0.1	-0.89	1.38	0.60	0.80	2.25	9762	1174	11	0	25	0	0	logfile
✔	7KNU	22963	2021-12-01	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.24	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.0	0.004	0.78	0.0	0.04	16.12	0.01	2.066	13.33	0.48	3.8	96.2	0.0	-0.48	0.56	0.59	0.77	0.27	3809	467	3	0	0	0	0	logfile
✔	6WB2	21585	2021-12-01	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.72	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.56	0.0	0.04	12.04	0.00	2.149	10.01	0.17	3.6	96.4	0.0	-0.22	0.62	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6ZQi	11364	2021-12-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.93	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.66	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	6W4S	21539	2021-12-01	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.00	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.004	0.68	0.0	0.04	15.50	0.01	2.156	8.80	0.56	3.8	96.2	0.0	1.78	0.45	0.59	0.85	2.13	4986	650	3	0	0	0	0	logfile
✔	7JNA	22403	2021-12-01	2020-08-04	3.6	3.74	—	3.8	0.004	0.69	0.0	0.04	13.30	0.03	2.215	11.86	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.017	1.55	0.0	0.05	16.19	0.01	2.014	15.10	0.18	4.0	95.9	0.1	-0.71	0.84	0.68	0.77	2.33	6432	834	9	0	15	0	0	logfile
✔	6SGS	10183	2021-12-01	2019-08-05	3.2	3.29	3.18	3.3	0.004	0.64	0.0	0.04	13.19	0.00	2.011	5.85	0.14	2.8	97.2	0.0	-3.26	0.57	0.69	0.97	3.3	0.003	0.57	0.0	0.04	15.74	0.00	1.949	6.80	0.17	2.4	97.6	0.0	1.27	2.13	0.67	0.85	2.37	54156	3528	8	0	0	0	27338	logfile
✔	7JPT	22422	2021-12-02	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.51	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.48	0.00	2.182	12.51	0.10	8.4	91.6	0.0	-2.25	0.56	0.73	0.77	2.68	10220	1327	3	0	5	0	0	logfile
✔	6SGR	10182	2021-12-01	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.13	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.003	0.54	0.0	0.04	15.48	0.00	1.986	5.36	0.17	2.8	97.2	0.0	1.14	0.77	0.71	0.86	2.87	54142	3528	8	0	0	0	27330	logfile
✔	7C77	30294	2021-12-01	2020-05-23	3.3	3.60	—	3.8	0.002	0.62	0.0	0.04	16.23	0.00	2.209	9.34	1.88	5.0	94.9	0.1	-2.63	0.58	0.75	1.54	3.8	0.004	0.78	0.0	0.04	17.29	0.01	2.155	12.51	0.66	5.4	94.6	0.0	-0.71	0.55	0.55	0.77	1.97	9762	1183	9	0	20	0	0	logfile
✔	6So5	10266	2021-12-01	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.55	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.83	0.0	0.05	14.25	0.01	2.180	16.81	0.00	5.8	94.2	0.0	-0.33	1.26	0.67	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	7KAP	22779	2021-12-02	2020-10-01	4.1	4.58	4.09	4.2	0.003	0.55	0.0	0.04	11.24	0.00	2.205	7.95	0.00	2.3	97.7	0.0	-1.05	0.62	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10715	1342	7	0	56	0	0	logfile
✔	7BZF	30252	2021-12-01	2020-04-27	3.26	3.61	3.32	3.6	0.003	0.61	0.0	0.04	13.90	0.00	2.199	11.67	0.00	8.5	91.5	0.0	-4.42	0.73	0.77	2.58	3.6	0.006	0.77	0.0	0.04	15.99	0.00	2.170	12.90	0.19	7.3	92.7	0.0	-1.48	0.47	0.69	0.78	2.03	9932	1200	7	19	2	0	0	logfile
✘	6XQN	22290	2021-12-01	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.69	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9433	1290	10	0	1	0	0	logfile
✔	6M71	30127	2021-12-01	2020-03-16	2.9	3.35	3.10	3.3	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.74	0.80	3.55	3.3	0.003	0.62	0.0	0.04	15.48	0.00	2.220	9.35	1.69	3.8	96.2	0.0	0.05	1.72	0.75	0.82	3.15	8614	1085	4	0	0	0	0	logfile
✔	6YSF	10895	2021-12-02	2020-04-22	3.4	3.49	3.31	3.5	0.004	0.77	0.0	0.04	15.31	0.00	1.874	13.85	0.90	8.5	91.5	0.0	-3.39	0.67	0.80	2.12	3.5	0.007	1.04	0.0	0.04	17.42	0.01	1.739	19.52	0.54	8.1	91.9	0.0	-0.25	0.67	0.67	0.80	1.60	10220	1327	7	0	0	0	0	logfile
✔	6Y97	10733	2021-12-01	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.71	0.73	—	4366	564	4	0	0	0	0	logfile
✔	7C2K	30275	2021-12-02	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.67	0.0	0.04	13.79	0.00	2.256	7.20	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10692	1256	7	31	3	0	0	logfile

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