Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K9F	9948	2022-05-14	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	7oBQ	12799	2022-05-14	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	12.88	0.00	2.106	9.25	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.011	1.11	0.0	0.04	15.51	0.00	1.846	21.29	0.37	4.1	95.9	0.0	0.39	1.25	0.77	0.81	0.90	16668	1642	11	165	39	0	0	logfile
✔	6PC7	20298	2022-05-15	2019-06-16	2.5	3.01	—	2.9	0.006	0.50	0.0	0.03	12.79	0.02	1.954	2.86	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.004	0.61	0.0	0.03	14.37	0.01	2.018	7.85	3.55	6.8	93.0	0.2	-0.97	1.25	0.66	0.88	3.95	72146	964	8	3015	1	0	0	logfile
✔	6Z5L	11079	2022-05-25	2020-05-26	3.8	4.08	—	3.9	0.004	0.63	0.0	0.03	15.41	0.00	1.986	3.72	0.00	5.2	94.8	0.0	1.60	0.53	0.68	0.31	3.9	0.004	0.73	0.0	0.04	17.30	0.00	2.134	14.41	0.27	4.6	95.4	0.0	2.36	1.29	0.58	0.86	1.00	154880	20080	80	0	0	0	0	logfile
✔	6PCT	20307	2022-05-15	2019-06-18	2.8	3.01	—	2.9	0.006	0.52	2.0	0.03	12.86	0.02	1.891	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.67	0.0	0.04	14.69	0.01	2.086	8.30	3.68	6.6	93.3	0.1	-0.91	0.41	0.68	0.89	4.30	72198	964	8	3015	1	0	0	logfile
✔	7JiL	22345	2022-05-16	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.70	0.00	1.987	6.79	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.007	0.70	0.0	0.04	15.87	0.01	1.790	6.52	5.13	12.3	87.6	0.1	-2.42	0.39	0.75	0.79	2.78	133098	5314	64	4327	325	36	0	logfile
✔	6W7N	21572	2022-05-17	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.007	0.73	0.0	0.04	15.89	0.01	2.082	12.57	1.30	12.0	87.7	0.4	-2.51	1.25	0.79	0.79	1.50	42287	1660	15	1372	0	0	0	logfile
✔	6VWM	21421	2022-05-17	2020-02-20	3.4	3.74	—	3.2	0.003	0.59	0.0	0.03	14.75	0.00	1.963	7.04	1.73	5.0	95.0	0.0	-3.11	0.82	0.83	1.68	3.2	0.005	0.70	0.0	0.04	16.61	0.00	1.825	18.46	0.76	7.3	92.7	0.0	-1.65	2.10	0.83	0.86	1.57	140044	5342	57	4580	53	0	0	logfile
✔	6PC6	20297	2022-05-15	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.96	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.004	0.63	0.0	0.03	14.58	0.01	1.976	7.98	3.42	6.7	93.1	0.2	-0.78	0.91	0.74	0.90	4.21	72127	963	8	3015	1	0	0	logfile
✔	6X34	22017	2022-05-17	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.85	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	6ZoK	11321	2022-05-18	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.11	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.007	0.68	0.0	0.04	16.03	0.01	1.814	4.24	2.85	2.9	97.1	0.0	0.44	1.56	0.75	0.88	4.00	50192	2970	26	1232	110	0	0	logfile
✔	7BL6	12219	2022-05-16	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.66	0.0	0.03	16.96	0.00	1.946	35.11	0.17	8.2	91.8	0.1	-1.70	3.13	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7BL5	12218	2022-05-17	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.86	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.004	0.64	1.0	0.03	15.81	0.00	1.958	17.19	0.88	7.9	92.1	0.0	-1.73	0.57	0.76	0.83	1.21	98927	4348	46	3033	3	27	0	logfile
✔	7BL4	12217	2022-05-16	2021-01-18	2.4	3.20	—	3.0	0.002	0.45	0.0	0.03	13.36	0.00	2.015	9.01	0.03	5.1	94.9	0.1	-0.52	0.80	0.85	2.49	3.0	0.006	0.66	0.0	0.04	14.81	0.01	1.760	12.32	3.73	7.1	92.8	0.1	-1.15	1.11	0.79	0.87	2.29	93560	3702	47	3016	9	35	0	logfile
✔	7NFX	12303	2022-05-21	2021-02-08	3.2	3.29	—	3.3	0.002	0.53	0.0	0.03	15.77	0.00	2.097	8.89	3.98	4.9	95.0	0.1	0.36	0.55	0.78	2.57	3.2	0.006	0.70	1.0	0.04	17.02	0.01	2.003	9.81	0.59	5.6	94.4	0.1	0.02	0.54	0.57	0.83	2.38	148232	7672	62	4018	30	0	0	logfile
✔	7o5H	12736	2022-05-16	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.95	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	14.61	0.01	1.074	13.60	0.42	3.8	96.2	0.0	0.27	1.48	0.87	0.85	1.30	34436	1730	22	964	167	0	0	logfile
✔	7oDS	12846	2022-05-12	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.15	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.77	1.0	0.04	14.75	0.01	1.478	11.86	0.36	3.3	96.7	0.0	0.33	1.69	0.79	0.79	2.24	108339	9371	67	1487	132	0	0	logfile
✔	7oDR	12845	2022-05-12	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.10	0.02	1.963	5.13	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.008	0.86	1.0	0.04	15.38	0.01	1.509	12.18	2.44	2.3	97.7	0.0	0.57	1.25	0.76	0.83	2.88	107464	9244	68	1489	135	0	0	logfile
✔	6W7M	21571	2022-05-18	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.009	1.11	2.0	0.05	18.82	0.01	1.977	32.75	0.89	14.0	85.7	0.4	-3.21	1.33	0.72	0.62	0.56	50694	2319	20	1512	0	0	0	logfile
✔	6ZoJ	11320	2022-05-15	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.007	0.69	0.0	0.04	16.02	0.01	1.068	5.53	2.64	3.5	96.5	0.0	0.48	2.45	0.81	0.87	3.31	75783	4914	45	1704	169	0	0	logfile

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