Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X57	33010	2022-12-12	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.98	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.004	0.64	0.0	0.03	30.07	0.00	2.275	12.91	0.99	2.4	97.6	0.0	2.69	0.70	0.83	0.79	1.19	9767	595	10	242	0	0	0	logfile
✔	7PGQ	13392	2022-12-16	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.46	0.00	1.905	3.83	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.002	0.53	0.0	0.03	12.92	0.00	2.015	5.79	0.28	3.6	96.4	0.1	0.93	0.72	0.81	0.79	1.26	31508	1970	3	0	2	0	15807	logfile
✔	7ZW1	14991	2022-12-12	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	4.0	0.002	0.48	0.0	0.03	17.37	0.00	2.034	8.22	0.32	2.3	97.7	0.0	3.27	0.70	0.65	0.79	1.44	11807	760	3	0	0	0	5883	logfile
✔	7Z4C	14493	2022-12-13	2022-03-03	3.87	5.00	3.91	4.1	0.003	0.45	0.0	0.03	15.32	0.00	2.232	8.16	2.06	2.5	97.5	0.0	1.06	0.91	0.83	1.82	4.1	0.002	0.59	0.0	0.04	16.68	0.00	2.158	12.49	0.33	2.7	97.3	0.0	0.97	0.70	0.91	0.84	1.25	14180	1357	4	148	0	0	0	logfile
✔	8CVi	27008	2022-12-13	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.59	1.0	0.04	16.36	0.00	2.034	10.85	0.50	4.1	95.9	0.0	3.67	2.21	0.58	0.84	0.86	66030	8856	33	0	0	0	0	logfile
✔	7Z4K	14500	2022-12-13	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.47	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	4.0	0.004	0.70	0.0	0.04	16.96	0.00	2.136	22.49	0.57	5.6	94.4	0.0	-0.13	1.90	0.88	0.80	0.75	14005	1360	4	138	0	0	0	logfile
✔	7V9C	31815	2022-12-14	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.95	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.004	0.75	0.0	0.04	29.43	0.01	2.091	22.31	0.16	5.4	94.5	0.1	0.35	1.77	0.73	0.57	—	23228	1518	18	546	0	0	0	logfile
✔	7SYN	25534	2022-12-15	2021-11-25	4.0	3.26	3.81	3.2	0.002	0.49	0.0	0.03	15.18	0.00	2.115	9.75	0.00	4.8	95.2	0.0	-0.83	0.64	0.72	—	3.2	0.006	0.80	0.0	0.04	17.19	0.01	1.963	14.74	0.71	9.9	90.1	0.0	-1.89	1.06	0.65	0.75	—	78761	4891	38	1859	2	0	0	logfile
✔	7TTW	26125	2022-12-15	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	15.04	0.00	2.065	3.80	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.002	0.55	0.0	0.03	15.88	0.00	2.020	4.41	3.37	4.3	95.7	0.0	-1.64	0.25	0.72	0.85	2.87	80853	2661	27	2801	0	0	0	logfile
✔	7TTU	26124	2022-12-15	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	14.34	0.00	2.175	4.28	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.006	0.75	0.0	0.04	16.30	0.01	2.014	4.87	4.45	5.7	94.3	0.0	-1.95	0.85	0.76	0.88	2.58	80724	2661	27	2795	0	0	0	logfile
✔	7XSM	33427	2022-12-12	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.77	0.0	0.04	19.97	0.01	1.775	49.41	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	8CZi	27098	2022-12-11	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.40	0.0	0.03	15.24	0.00	2.167	6.23	0.00	0.0	100.0	0.0	5.34	0.86	0.83	0.84	1.97	2550	339	6	0	0	0	0	logfile
✔	7E9C	31029	2022-12-15	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.83	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.004	0.69	0.0	0.04	28.66	0.01	2.126	18.84	1.11	4.9	95.1	0.0	-0.16	1.93	0.82	0.78	0.87	12338	898	11	260	0	0	0	logfile
✔	7TCP	25816	2022-12-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.002	0.48	0.0	0.04	12.83	0.00	2.136	4.68	0.20	2.6	97.4	0.0	2.73	0.36	0.71	0.83	2.13	14992	1912	12	0	12	0	0	logfile
✔	7TB3	25791	2022-12-22	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.57	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.004	0.66	0.0	0.04	15.18	0.00	2.152	9.23	1.88	3.0	97.0	0.0	3.05	0.99	0.74	0.86	2.01	48000	5832	24	0	0	0	0	logfile
✔	7Z4H	14497	2022-12-13	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	13.12	0.00	2.043	10.10	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.003	0.52	0.0	0.03	14.70	0.00	2.157	12.88	0.17	2.7	97.3	0.0	1.75	1.66	0.91	0.85	1.69	13900	1334	4	142	0	0	0	logfile
✔	7TBH	25799	2022-12-22	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.38	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.003	0.66	0.0	0.04	13.86	0.00	2.130	8.18	0.55	2.1	97.5	0.4	2.83	0.95	0.81	0.88	2.83	51768	6288	48	0	0	0	0	logfile
✔	7X58	33011	2022-12-12	2022-03-04	3.93	4.15	—	3.9	0.003	0.56	0.0	0.03	27.31	0.00	2.221	7.16	0.00	0.9	99.1	0.0	0.68	0.86	0.80	1.58	3.9	0.004	0.71	0.0	0.04	29.66	0.00	2.214	15.06	0.99	2.4	97.6	0.0	2.24	1.37	0.88	0.83	0.65	9775	596	10	242	0	0	0	logfile
✔	7Z4G	14496	2022-12-12	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	13.82	0.00	2.209	12.87	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.003	0.60	0.0	0.04	16.43	0.00	2.168	19.12	0.38	3.7	96.2	0.1	0.90	2.10	0.86	0.78	0.45	12714	1188	4	144	0	0	0	logfile
✔	7NAF	24271	2022-12-14	2021-06-21	3.13	3.14	3.06	3.1	0.005	0.59	0.0	0.03	15.35	0.01	2.172	7.16	0.00	4.2	95.8	0.0	0.43	0.70	0.78	3.17	3.1	0.004	0.62	0.0	0.04	16.47	0.00	2.106	7.07	0.00	5.6	94.4	0.0	0.06	0.30	0.71	0.82	3.07	18868	1342	17	378	0	2	0	logfile

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