Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YDW	10779	2021-08-11	2020-03-21	4.2	4.28	4.21	4.2	0.002	0.47	0.0	0.03	13.31	0.00	1.232	8.45	1.91	3.4	96.6	0.0	-1.95	0.72	0.75	—	4.2	0.004	0.73	1.0	0.04	15.61	0.01	1.199	16.21	0.05	5.3	94.7	0.0	-0.42	1.68	0.74	0.78	—	180836	15161	124	2719	337	5	0	logfile
✔	6WQN	21872	2021-08-11	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.50	3.0	0.03	14.74	0.00	1.951	9.01	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	2.8	0.006	0.85	0.0	0.05	16.99	0.01	2.041	4.78	6.48	5.9	94.1	0.0	-2.44	0.37	0.77	0.88	3.50	80700	2646	28	2798	1	0	0	logfile
✔	6ZoK	11321	2021-08-11	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.02	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.008	0.74	0.0	0.05	16.18	0.01	1.823	4.35	2.89	3.2	96.8	0.0	0.29	1.57	0.77	0.91	4.01	50192	2970	26	1232	110	0	0	logfile
✔	6SiH	10210	2021-08-11	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.61	0.0	0.04	13.41	0.00	2.075	12.23	0.00	4.7	95.3	0.0	1.11	1.59	0.88	0.78	—	37310	4880	10	0	0	0	0	logfile
✔	6NF8	9362	2021-08-09	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.005	0.77	0.0	0.04	16.07	0.01	2.045	13.54	0.37	5.6	94.4	0.0	-0.36	3.21	0.84	0.79	1.22	65776	5509	32	952	147	0	0	logfile
✔	6VLZ	21233	2021-08-10	2020-01-27	2.97	3.50	—	3.3	0.005	0.52	1.0	0.03	12.31	0.00	1.115	7.44	0.89	10.8	87.5	1.7	-2.83	0.70	0.61	1.27	3.3	0.007	0.80	2.0	0.04	16.06	0.01	1.869	12.56	2.88	6.7	93.1	0.2	-0.59	2.41	0.80	0.83	1.76	174849	14904	107	2561	243	0	0	logfile
✔	6NEQ	9358	2021-08-09	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.006	0.67	0.0	0.03	16.26	0.00	2.095	11.27	0.35	5.1	94.9	0.1	0.02	2.05	0.85	0.84	1.31	65776	5509	32	952	147	0	0	logfile
✔	3J9W	6306	2021-08-11	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.82	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.73	1.0	0.04	17.70	0.00	2.068	17.45	1.13	7.2	92.2	0.6	-0.59	1.79	0.80	0.84	1.11	135425	5661	54	4675	0	0	0	logfile
✔	6T2V	10370	2021-08-09	2019-10-09	3.8	4.58	—	3.8	0.002	0.45	0.0	0.03	13.03	0.01	2.213	4.74	3.02	2.0	98.0	0.0	-3.62	0.88	0.73	0.79	3.8	0.006	0.82	0.0	0.04	15.92	0.00	2.057	20.79	0.21	5.6	94.4	0.0	-0.11	2.43	0.90	0.81	0.57	23826	2847	4	54	0	0	0	logfile
✘	6NUD	0516	2021-08-09	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20831	2420	13	68	1	0	0	logfile
✔	6ENJ	3899	2021-08-14	2017-10-05	3.7	3.76	—	3.7	0.003	0.61	0.0	0.03	14.09	0.01	1.234	4.06	0.06	8.4	91.3	0.3	-4.96	0.77	0.77	1.43	3.7	0.007	0.76	2.0	0.04	15.92	0.01	1.774	15.50	0.48	10.8	88.9	0.2	-2.68	1.74	0.79	0.79	1.29	147111	5950	56	4693	0	0	0	logfile
✔	6PC6	20297	2021-08-10	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.89	2.11	6.4	93.5	0.1	-3.59	0.73	0.88	4.50	2.9	0.006	0.67	0.0	0.04	14.81	0.01	2.024	7.95	3.68	6.5	93.4	0.1	-0.87	1.24	0.74	0.90	4.26	72127	963	8	3015	1	0	0	logfile
✔	6VWM	21421	2021-08-12	2020-02-20	3.4	3.74	—	3.2	0.003	0.59	0.0	0.03	14.75	0.00	1.963	7.00	1.73	5.0	95.0	0.0	-3.11	0.82	0.83	1.68	3.2	0.008	0.76	0.0	0.04	16.68	0.01	1.698	20.55	0.39	8.0	92.0	0.0	-1.79	2.11	0.83	0.86	1.57	140044	5342	57	4580	53	0	0	logfile
✔	6XMF	22257	2021-08-07	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.51	0.00	2.151	14.52	0.20	9.8	90.2	0.0	-0.59	1.15	0.72	0.76	3.01	7382	627	3	109	1	0	0	logfile
✔	6HD5	0201	2021-08-07	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	12.33	0.00	2.149	16.76	0.00	5.8	94.1	0.1	-0.19	2.13	0.45	0.51	—	9707	1234	3	0	0	0	0	logfile
✔	6SWA	10321	2021-08-11	2019-09-20	3.1	3.53	—	3.4	0.002	0.45	0.0	0.03	13.70	0.00	1.115	10.75	0.43	4.2	95.6	0.2	-2.39	0.68	0.83	2.07	3.4	0.005	0.62	0.0	0.04	15.92	0.01	1.867	12.49	0.97	6.0	94.0	0.0	-0.55	1.47	0.70	0.87	2.04	138160	6739	60	3888	250	0	0	logfile
✔	6K3o	9910	2021-08-10	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	15.94	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.003	0.67	0.0	0.03	17.15	0.00	2.087	6.14	0.30	1.8	98.2	0.0	4.16	0.51	0.76	0.80	2.28	31508	3790	48	0	36	0	0	logfile
✔	6X35	22018	2021-08-09	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.008	0.80	2.0	0.04	11.60	0.01	1.614	11.87	0.01	4.1	95.9	0.0	0.71	1.71	0.57	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	6GBZ	4378	2021-08-11	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.80	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.88	0.01	1.965	18.55	0.92	10.7	89.2	0.1	-2.02	1.58	0.78	0.77	1.04	86401	3074	29	2908	0	0	0	logfile
✔	6ERi	3941	2021-08-13	2017-10-18	3.0	3.06	3.00	3.0	0.003	0.45	0.0	0.03	11.66	0.00	1.251	2.49	0.00	4.3	95.7	0.0	-3.80	0.66	0.74	2.70	3.0	0.006	0.70	0.0	0.04	15.03	0.01	1.831	8.28	3.78	5.2	94.8	0.0	-0.92	1.23	0.79	0.86	2.61	145026	6178	66	4401	515	0	0	logfile

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